My Bibliography

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Friesner J, Colón-Carmona A, Schnoes AM, Stepanova A, Mason GA, Macintosh GC, Ullah H, Baxter I, Callis J, Sierra-Cajas K, Elliott K, Haswell ES, Zavala ME, Wildermuth M, Williams M, Ayalew M, Henkhaus N, Prunet N, Lemaux PG, Yadegari R, Amasino R, Hangarter R, Innes R, Brady S, Long T, Woodford-Thomas T, May V, Sun Y, Dinneny JR. Broadening the impact of plant science through innovative, integrative, and inclusive outreach. Plant Direct. 2021 Apr;5(4):e00316. doi: 10.1002/pld3.316. eCollection 2021 Apr. PubMed PMID: 33870032; PubMed Central PMCID: PMC8045900.

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Zhan J, Li G, Ryu CH, Ma C, Zhang S, Lloyd A, Hunter BG, Larkins BA, Drews GN, Wang X, Yadegari R. Opaque-2 Regulates a Complex Gene Network Associated with Cell Differentiation and Storage Functions of Maize Endosperm. Plant Cell. 2018 Oct;30(10):2425-2446. doi: 10.1105/tpc.18.00392. Epub 2018 Sep 27. PubMed PMID: 30262552; PubMed Central PMCID: PMC6241275.

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Zhang S, Zhan J, Yadegari R. Maize opaque mutants are no longer so opaque. Plant Reprod. 2018 Sep;31(3):319-326. doi: 10.1007/s00497-018-0344-3. Epub 2018 Jul 5. Review. PubMed PMID: 29978299; PubMed Central PMCID: PMC6105308.

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Zhang S, Wang D, Zhang H, Skaggs MI, Lloyd A, Ran D, An L, Schumaker KS, Drews GN, Yadegari R. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol. 2018 May;177(1):285-299. doi: 10.1104/pp.17.00534. Epub 2018 Mar 9. PubMed PMID: 29523711; PubMed Central PMCID: PMC5933120.

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Zhang S, Thakare D, Yadegari R. Laser-Capture Microdissection of Maize Kernel Compartments for RNA-Seq-Based Expression Analysis. Methods Mol Biol. 2018;1676:153-163. doi: 10.1007/978-1-4939-7315-6_9. PubMed PMID: 28986909.

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Monihan SM, Magness CA, Yadegari R, Smith SE, Schumaker KS. Arabidopsis CALCINEURIN B-LIKE10 Functions Independently of the SOS Pathway during Reproductive Development in Saline Conditions. Plant Physiol. 2016 May;171(1):369-79. doi: 10.1104/pp.16.00334. Epub 2016 Mar 15. PubMed PMID: 26979332; PubMed Central PMCID: PMC4854721.

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Zhan J, Thakare D, Ma C, Lloyd A, Nixon NM, Arakaki AM, Burnett WJ, Logan KO, Wang D, Wang X, Drews GN, Yadegari R. RNA sequencing of laser-capture microdissected compartments of the maize kernel identifies regulatory modules associated with endosperm cell differentiation. Plant Cell. 2015 Mar;27(3):513-31. doi: 10.1105/tpc.114.135657. Epub 2015 Mar 17. PubMed PMID: 25783031; PubMed Central PMCID: PMC4558669.

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Thakare D, Yang R, Steffen JG, Zhan J, Wang D, Clark RM, Wang X, Yadegari R. RNA-Seq analysis of laser-capture microdissected cells of the developing central starchy endosperm of maize. Genom Data. 2014 Dec;2:242-5. doi: 10.1016/j.gdata.2014.07.003. eCollection 2014 Dec. PubMed PMID: 26484101; PubMed Central PMCID: PMC4535972.

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Leroux BM, Goodyke AJ, Schumacher KI, Abbott CP, Clore AM, Yadegari R, Larkins BA, Dannenhoffer JM. Maize early endosperm growth and development: from fertilization through cell type differentiation. Am J Bot. 2014 Aug;101(8):1259-74. doi: 10.3732/ajb.1400083. Epub 2014 Aug 7. PubMed PMID: 25104551.

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Li G, Wang D, Yang R, Logan K, Chen H, Zhang S, Skaggs MI, Lloyd A, Burnett WJ, Laurie JD, Hunter BG, Dannenhoffer JM, Larkins BA, Drews GN, Wang X, Yadegari R. Temporal patterns of gene expression in developing maize endosperm identified through transcriptome sequencing. Proc Natl Acad Sci U S A. 2014 May 27;111(21):7582-7. doi: 10.1073/pnas.1406383111. Epub 2014 May 12. PubMed PMID: 24821765; PubMed Central PMCID: PMC4040564.

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Qin Y, Zhao L, Skaggs MI, Andreuzza S, Tsukamoto T, Panoli A, Wallace KN, Smith S, Siddiqi I, Yang Z, Yadegari R, Palanivelu R. ACTIN-RELATED PROTEIN6 Regulates Female Meiosis by Modulating Meiotic Gene Expression in Arabidopsis. Plant Cell. 2014 Apr;26(4):1612-1628. doi: 10.1105/tpc.113.120576. Epub 2014 Apr 15. PubMed PMID: 24737671; PubMed Central PMCID: PMC4036575.

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Xin M, Yang R, Li G, Chen H, Laurie J, Ma C, Wang D, Yao Y, Larkins BA, Sun Q, Yadegari R, Wang X, Ni Z. Dynamic expression of imprinted genes associates with maternally controlled nutrient allocation during maize endosperm development. Plant Cell. 2013 Sep;25(9):3212-27. doi: 10.1105/tpc.113.115592. Epub 2013 Sep 20. PubMed PMID: 24058158; PubMed Central PMCID: PMC3809528.

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Drews GN, Wang D, Steffen JG, Schumaker KS, Yadegari R. Identification of genes expressed in the angiosperm female gametophyte. J Exp Bot. 2011 Mar;62(5):1593-9. doi: 10.1093/jxb/erq385. Epub 2010 Nov 30. Review. PubMed PMID: 21118822.

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Wang D, Zhang C, Hearn DJ, Kang IH, Punwani JA, Skaggs MI, Drews GN, Schumaker KS, Yadegari R. Identification of transcription-factor genes expressed in the Arabidopsis female gametophyte. BMC Plant Biol. 2010 Jun 16;10:110. doi: 10.1186/1471-2229-10-110. PubMed PMID: 20550711; PubMed Central PMCID: PMC3236301.

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Chung T, Wang D, Kim CS, Yadegari R, Larkins BA. Plant SMU-1 and SMU-2 homologues regulate pre-mRNA splicing and multiple aspects of development. Plant Physiol. 2009 Nov;151(3):1498-512. doi: 10.1104/pp.109.141705. Epub 2009 Sep 4. PubMed PMID: 19734266; PubMed Central PMCID: PMC2773069.

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Nodine MD, Yadegari R, Tax FE. RPK1 and TOAD2 are two receptor-like kinases redundantly required for arabidopsis embryonic pattern formation. Dev Cell. 2007 Jun;12(6):943-56. doi: 10.1016/j.devcel.2007.04.003. PubMed PMID: 17543866.

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Coury D, Zhang C, Ko A, Skaggs M, Christensen C, Drews G, Feldmann K, Yadegari R. Segregation distortion in Arabidopsis gametophytic factor 1 (gfa1) mutants is caused by a deficiency of an essential RNA splicing factor. Sexual Plant Reproduction. 2007-3-; 20(2):87-97. doi: 10.1007/s00497-007-0046-8.

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Wang D, Tyson MD, Jackson SS, Yadegari R. Partially redundant functions of two SET-domain polycomb-group proteins in controlling initiation of seed development in Arabidopsis. Proc Natl Acad Sci U S A. 2006 Aug 29;103(35):13244-9. doi: 10.1073/pnas.0605551103. Epub 2006 Aug 21. PubMed PMID: 16924116; PubMed Central PMCID: PMC1559784.

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Yadegari R, Drews GN. Female gametophyte development. Plant Cell. 2004;16 Suppl(Suppl):S133-41. doi: 10.1105/tpc.018192. Epub 2004 Apr 9. Review. PubMed PMID: 15075395; PubMed Central PMCID: PMC2643389.

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Dinneny JR, Yadegari R, Fischer RL, Yanofsky MF, Weigel D. The role of JAGGED in shaping lateral organs. Development. 2004 Mar;131(5):1101-10. doi: 10.1242/dev.00949. PubMed PMID: 14973282.

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Drews GN, Yadegari R. Development and function of the angiosperm female gametophyte. Annu Rev Genet. 2002;36:99-124. doi: 10.1146/annurev.genet.36.040102.131941. Epub 2002 Jun 11. Review. PubMed PMID: 12429688.

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Apuya NR, Yadegari R, Fischer RL, Harada JJ, Goldberg RB. RASPBERRY3 gene encodes a novel protein important for embryo development. Plant Physiol. 2002 Jun;129(2):691-705. doi: 10.1104/pp.004010. PubMed PMID: 12068112; PubMed Central PMCID: PMC161694.

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Apuya NR, Yadegari R, Fischer RL, Harada JJ, Zimmerman JL, Goldberg RB. The Arabidopsis embryo mutant schlepperless has a defect in the chaperonin-60alpha gene. Plant Physiol. 2001 Jun;126(2):717-30. doi: 10.1104/pp.126.2.717. PubMed PMID: 11402200; PubMed Central PMCID: PMC111162.

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Yadegari R, Kinoshita T, Lotan O, Cohen G, Katz A, Choi Y, Katz A, Nakashima K, Harada JJ, Goldberg RB, Fischer RL, Ohad N. Mutations in the FIE and MEA genes that encode interacting polycomb proteins cause parent-of-origin effects on seed development by distinct mechanisms. Plant Cell. 2000 Dec;12(12):2367-2382. doi: 10.1105/tpc.12.12.2367. PubMed PMID: 11148284; PubMed Central PMCID: PMC102224.

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Kinoshita T, Yadegari R, Harada JJ, Goldberg RB, Fischer RL. Imprinting of the MEDEA polycomb gene in the Arabidopsis endosperm. Plant Cell. 1999 Oct;11(10):1945-52. doi: 10.1105/tpc.11.10.1945. PubMed PMID: 10521524; PubMed Central PMCID: PMC144115.

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Kiyosue T, Ohad N, Yadegari R, Hannon M, Dinneny J, Wells D, Katz A, Margossian L, Harada JJ, Goldberg RB, Fischer RL. Control of fertilization-independent endosperm development by the MEDEA polycomb gene in Arabidopsis. Proc Natl Acad Sci U S A. 1999 Mar 30;96(7):4186-91. doi: 10.1073/pnas.96.7.4186. PubMed PMID: 10097185; PubMed Central PMCID: PMC22442.

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Ohad N, Yadegari R, Margossian L, Hannon M, Michaeli D, Harada JJ, Goldberg RB, Fischer RL. Mutations in FIE, a WD polycomb group gene, allow endosperm development without fertilization. Plant Cell. 1999 Mar;11(3):407-16. doi: 10.1105/tpc.11.3.407. PubMed PMID: 10072400; PubMed Central PMCID: PMC144179.

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Yadegari R, Paiva G, Laux T, Koltunow AM, Apuya N, Zimmerman JL, Fischer RL, Harada JJ, Goldberg RB. Cell Differentiation and Morphogenesis Are Uncoupled in Arabidopsis raspberry Embryos. Plant Cell. 1994 Dec;6(12):1713-1729. doi: 10.1105/tpc.6.12.1713. PubMed PMID: 12244232; PubMed Central PMCID: PMC160557.

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Goldberg RB, de Paiva G, Yadegari R. Plant embryogenesis: zygote to seed. Science. 1994 Oct 28;266(5185):605-14. doi: 10.1126/science.266.5185.605. PubMed PMID: 17793455.

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Guiltinan MJ, Ma DP, Barker RF, Bustos MM, Cyr RJ, Yadegari R, Fosket DE. The isolation, characterization and sequence of two divergent β-tubulin genes from soybean (Glycine max L.). Plant Mol Biol. 1987 Mar;10(2):171-84. doi: 10.1007/BF00016154. PubMed PMID: 24277502.

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Rosenthal A, Rhee L, Yadegari R, Paro R, Ullrich A, Goeddel DV. Structure and nucleotide sequence of a Drosophila melanogaster protein kinase C gene. EMBO J. 1987 Feb;6(2):433-41. doi: 10.1002/j.1460-2075.1987.tb04773.x. PubMed PMID: 3107983; PubMed Central PMCID: PMC553414.