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Westbrook JD, Young JY, Shao C, Feng Z, Guranovic V, Lawson CL, Vallat B, Adams PD, Berrisford JM, Bricogne G, Diederichs K, Joosten RP, Keller P, Moriarty NW, Sobolev OV, Velankar S, Vonrhein C, Waterman DG, Kurisu G, Berman HM, Burley SK, Peisach E. PDBx/mmCIF Ecosystem: Foundational Semantic Tools for Structural Biology. J Mol Biol. 2022 Jun 15;434(11):167599. doi: 10.1016/j.jmb.2022.167599. Epub 2022 Apr 20. Review. PubMed PMID: 35460671.
Macdonald SS, Pereira JH, Liu F, Tegl G, DeGiovanni A, Wardman JF, Deutsch S, Yoshikuni Y, Adams PD, Withers SG. A Synthetic Gene Library Yields a Previously Unknown Glycoside Phosphorylase That Degrades and Assembles Poly-β-1,3-GlcNAc, Completing the Suite of β-Linked GlcNAc Polysaccharides. ACS Cent Sci. 2022 Apr 27;8(4):430-440. doi: 10.1021/acscentsci.1c01570. Epub 2022 Mar 16. PubMed PMID: 35505869; PubMed Central PMCID: PMC9052796.
Iwai K, Wehrs M, Garber M, Sustarich J, Washburn L, Costello Z, Kim PW, Ando D, Gaillard WR, Hillson NJ, Adams PD, Mukhopadhyay A, Garcia Martin H, Singh AK. Scalable and automated CRISPR-based strain engineering using droplet microfluidics. Microsyst Nanoeng. 2022;8:31. doi: 10.1038/s41378-022-00357-3. eCollection 2022. PubMed PMID: 35359611; PubMed Central PMCID: PMC8924257.
Hancock M, Peulen TO, Webb B, Poon B, Fraser JS, Adams P, Sali A. Integration of software tools for integrative modeling of biomolecular systems. J Struct Biol. 2022 Mar;214(1):107841. doi: 10.1016/j.jsb.2022.107841. Epub 2022 Feb 9. PubMed PMID: 35149213.
Chen Y, Kaplan Lease N, Gin JW, Ogorzalek TL, Adams PD, Hillson NJ, Petzold CJ. Modular automated bottom-up proteomic sample preparation for high-throughput applications. PLoS One. 2022;17(2):e0264467. doi: 10.1371/journal.pone.0264467. eCollection 2022. PubMed PMID: 35213656; PubMed Central PMCID: PMC8880914.
Baek M, DiMaio F, Anishchenko I, Dauparas J, Ovchinnikov S, Lee GR, Wang J, Cong Q, Kinch LN, Schaeffer RD, Millán C, Park H, Adams C, Glassman CR, DeGiovanni A, Pereira JH, Rodrigues AV, van Dijk AA, Ebrecht AC, Opperman DJ, Sagmeister T, Buhlheller C, Pavkov-Keller T, Rathinaswamy MK, Dalwadi U, Yip CK, Burke JE, Garcia KC, Grishin NV, Adams PD, Read RJ, Baker D. Accurate prediction of protein structures and interactions using a three-track neural network. Science. 2021 Aug 20;373(6557):871-876. doi: 10.1126/science.abj8754. Epub 2021 Jul 15. PubMed PMID: 34282049; PubMed Central PMCID: PMC7612213.
van Zundert GCP, Moriarty NW, Sobolev OV, Adams PD, Borrelli KW. Macromolecular refinement of X-ray and cryoelectron microscopy structures with Phenix/OPLS3e for improved structure and ligand quality. Structure. 2021 Aug 5;29(8):913-921.e4. doi: 10.1016/j.str.2021.03.011. Epub 2021 Apr 5. PubMed PMID: 33823127; PubMed Central PMCID: PMC8349848.
Ibrahim M, Moriarty NW, Kern J, Holton JM, Brewster AS, Bhowmick A, Bergmann U, Zouni A, Messinger J, Yachandra VK, Yano J, Dobbek H, Sauter NK, Adams PD. Reply to Wang et al.: Clear evidence of binding of Ox to the oxygen-evolving complex of photosystem II is best observed in the omit map. Proc Natl Acad Sci U S A. 2021 Jun 15;118(24). doi: 10.1073/pnas.2102342118. PubMed PMID: 34117122; PubMed Central PMCID: PMC8214684.
Ing N, Deng K, Chen Y, Aulitto M, Gin JW, Pham TLM, Petzold CJ, Singer SW, Bowen B, Sale KL, Simmons BA, Singh AK, Adams PD, Northen TR. A multiplexed nanostructure-initiator mass spectrometry (NIMS) assay for simultaneously detecting glycosyl hydrolase and lignin modifying enzyme activities. Sci Rep. 2021 Jun 3;11(1):11803. doi: 10.1038/s41598-021-91181-8. PubMed PMID: 34083602; PubMed Central PMCID: PMC8175421.
Pham LTM, Deng K, Northen TR, Singer SW, Adams PD, Simmons BA, Sale KL. Experimental and theoretical insights into the effects of pH on catalysis of bond-cleavage by the lignin peroxidase isozyme H8 from Phanerochaete chrysosporium. Biotechnol Biofuels. 2021 Apr 29;14(1):108. doi: 10.1186/s13068-021-01953-7. PubMed PMID: 33926536; PubMed Central PMCID: PMC8082889.
Terwilliger TC, Sobolev OV, Afonine PV, Adams PD, Ho CM, Li X, Zhou ZH. Protein identification from electron cryomicroscopy maps by automated model building and side-chain matching. Acta Crystallogr D Struct Biol. 2021 Apr 1;77(Pt 4):457-462. doi: 10.1107/S2059798321001765. Epub 2021 Mar 30. PubMed PMID: 33825706; PubMed Central PMCID: PMC8025881.
Lui LM, Majumder EL, Smith HJ, Carlson HK, von Netzer F, Fields MW, Stahl DA, Zhou J, Hazen TC, Baliga NS, Adams PD, Arkin AP. Mechanism Across Scales: A Holistic Modeling Framework Integrating Laboratory and Field Studies for Microbial Ecology. Front Microbiol. 2021;12:642422. doi: 10.3389/fmicb.2021.642422. eCollection 2021. PubMed PMID: 33841364; PubMed Central PMCID: PMC8024649.
Wang X, Pereira JH, Tsutakawa S, Fang X, Adams PD, Mukhopadhyay A, Lee TS. Efficient production of oxidized terpenoids via engineering fusion proteins of terpene synthase and cytochrome P450. Metab Eng. 2021 Mar;64:41-51. doi: 10.1016/j.ymben.2021.01.004. Epub 2021 Jan 19. PubMed PMID: 33482331; PubMed Central PMCID: PMC7987753.
Kim J, Baidoo EEK, Amer B, Mukhopadhyay A, Adams PD, Simmons BA, Lee TS. Engineering Saccharomyces cerevisiae for isoprenol production. Metab Eng. 2021 Mar;64:154-166. doi: 10.1016/j.ymben.2021.02.002. Epub 2021 Feb 10. PubMed PMID: 33581331.
Lawson CL, Kryshtafovych A, Adams PD, Afonine PV, Baker ML, Barad BA, Bond P, Burnley T, Cao R, Cheng J, Chojnowski G, Cowtan K, Dill KA, DiMaio F, Farrell DP, Fraser JS, Herzik MA Jr, Hoh SW, Hou J, Hung LW, Igaev M, Joseph AP, Kihara D, Kumar D, Mittal S, Monastyrskyy B, Olek M, Palmer CM, Patwardhan A, Perez A, Pfab J, Pintilie GD, Richardson JS, Rosenthal PB, Sarkar D, Schäfer LU, Schmid MF, Schröder GF, Shekhar M, Si D, Singharoy A, Terashi G, Terwilliger TC, Vaiana A, Wang L, Wang Z, Wankowicz SA, Williams CJ, Winn M, Wu T, Yu X, Zhang K, Berman HM, Chiu W. Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge. Nat Methods. 2021 Feb;18(2):156-164. doi: 10.1038/s41592-020-01051-w. Epub 2021 Feb 4. PubMed PMID: 33542514; PubMed Central PMCID: PMC7864804.
Liebschner D, Afonine PV, Moriarty NW, Poon BK, Chen VB, Adams PD. CERES: a cryo-EM re-refinement system for continuous improvement of deposited models. Acta Crystallogr D Struct Biol. 2021 Jan 1;77(Pt 1):48-61. doi: 10.1107/S2059798320015879. Epub 2021 Jan 1. PubMed PMID: 33404525; PubMed Central PMCID: PMC7787109.
Moriarty NW, Liebschner D, Tronrud DE, Adams PD. Arginine off-kilter: guanidinium is not as planar as restraints denote. Acta Crystallogr D Struct Biol. 2020 Dec 1;76(Pt 12):1159-1166. doi: 10.1107/S2059798320013534. Epub 2020 Nov 24. PubMed PMID: 33263321; PubMed Central PMCID: PMC7709202.
Sobolev OV, Afonine PV, Moriarty NW, Hekkelman ML, Joosten RP, Perrakis A, Adams PD. A Global Ramachandran Score Identifies Protein Structures with Unlikely Stereochemistry. Structure. 2020 Nov 3;28(11):1249-1258.e2. doi: 10.1016/j.str.2020.08.005. Epub 2020 Aug 27. PubMed PMID: 32857966; PubMed Central PMCID: PMC7642142.
Ge X, Thorgersen MP, Poole FL 2nd, Deutschbauer AM, Chandonia JM, Novichkov PS, Adams PD, Arkin AP, Hazen TC, Adams MWW. Draft Genome Sequence of Bacillus sp. Strain EB106-08-02-XG196, Isolated from High-Nitrate-Contaminated Sediment. Microbiol Resour Announc. 2020 Oct 29;9(44). doi: 10.1128/MRA.01149-20. PubMed PMID: 33122416; PubMed Central PMCID: PMC7595952.
Ge X, Thorgersen MP, Poole FL 2nd, Deutschbauer AM, Chandonia JM, Novichkov PS, Gushgari-Doyle S, Lui LM, Nielsen T, Chakraborty R, Adams PD, Arkin AP, Hazen TC, Adams MWW. Characterization of a Metal-Resistant Bacillus Strain With a High Molybdate Affinity ModA From Contaminated Sediments at the Oak Ridge Reservation. Front Microbiol. 2020;11:587127. doi: 10.3389/fmicb.2020.587127. eCollection 2020. PubMed PMID: 33193240; PubMed Central PMCID: PMC7604516.
Terwilliger TC, Sobolev OV, Afonine PV, Adams PD, Read RJ. Density modification of cryo-EM maps. Acta Crystallogr D Struct Biol. 2020 Oct 1;76(Pt 10):912-925. doi: 10.1107/S205979832001061X. Epub 2020 Sep 22. PubMed PMID: 33021493; PubMed Central PMCID: PMC7543659.
Park MR, Chen Y, Thompson M, Benites VT, Fong B, Petzold CJ, Baidoo EEK, Gladden JM, Adams PD, Keasling JD, Simmons BA, Singer SW. Response of Pseudomonas putida to Complex, Aromatic-Rich Fractions from Biomass. ChemSusChem. 2020 Sep 7;13(17):4455-4467. doi: 10.1002/cssc.202000268. Epub 2020 Apr 30. PubMed PMID: 32160408.
Terwilliger TC, Ludtke SJ, Read RJ, Adams PD, Afonine PV. Improvement of cryo-EM maps by density modification. Nat Methods. 2020 Sep;17(9):923-927. doi: 10.1038/s41592-020-0914-9. Epub 2020 Aug 17. PubMed PMID: 32807957; PubMed Central PMCID: PMC7484085.
Thompson MG, Blake-Hedges JM, Pereira JH, Hangasky JA, Belcher MS, Moore WM, Barajas JF, Cruz-Morales P, Washington LJ, Haushalter RW, Eiben CB, Liu Y, Skyrud W, Benites VT, Barnum TP, Baidoo EEK, Scheller HV, Marletta MA, Shih PM, Adams PD, Keasling JD. An iron (II) dependent oxygenase performs the last missing step of plant lysine catabolism. Nat Commun. 2020 Jun 10;11(1):2931. doi: 10.1038/s41467-020-16815-3. PubMed PMID: 32523014; PubMed Central PMCID: PMC7286885.
Ibrahim M, Fransson T, Chatterjee R, Cheah MH, Hussein R, Lassalle L, Sutherlin KD, Young ID, Fuller FD, Gul S, Kim IS, Simon PS, de Lichtenberg C, Chernev P, Bogacz I, Pham CC, Orville AM, Saichek N, Northen T, Batyuk A, Carbajo S, Alonso-Mori R, Tono K, Owada S, Bhowmick A, Bolotovsky R, Mendez D, Moriarty NW, Holton JM, Dobbek H, Brewster AS, Adams PD, Sauter NK, Bergmann U, Zouni A, Messinger J, Kern J, Yachandra VK, Yano J. Untangling the sequence of events during the S2 → S3 transition in photosystem II and implications for the water oxidation mechanism. Proc Natl Acad Sci U S A. 2020 Jun 9;117(23):12624-12635. doi: 10.1073/pnas.2000529117. Epub 2020 May 20. PubMed PMID: 32434915; PubMed Central PMCID: PMC7293653.
Curran SC, Pereira JH, Baluyot MJ, Lake J, Puetz H, Rosenburg DJ, Adams P, Keasling JD. Structure and Function of BorB, the Type II Thioesterase from the Borrelidin Biosynthetic Gene Cluster. Biochemistry. 2020 Apr 28;59(16):1630-1639. doi: 10.1021/acs.biochem.0c00126. Epub 2020 Apr 13. PubMed PMID: 32250597.
Liebschner D, Afonine PV, Moriarty NW, Adams PD. What are the current limits on determination of protonation state using neutron macromolecular crystallography?. Methods Enzymol. 2020;634:225-255. doi: 10.1016/bs.mie.2020.01.008. Epub 2020 Feb 13. PubMed PMID: 32093835; PubMed Central PMCID: PMC7571246.
Liebschner D, Afonine PV, Urzhumtsev AG, Adams PD. Implementation of the riding hydrogen model in CCTBX to support the next generation of X-ray and neutron joint refinement in Phenix. Methods Enzymol. 2020;634:177-199. doi: 10.1016/bs.mie.2020.01.007. Epub 2020 Feb 13. PubMed PMID: 32093832; PubMed Central PMCID: PMC7574815.
Blake-Hedges JM, Pereira JH, Cruz-Morales P, Thompson MG, Barajas JF, Chen J, Krishna RN, Chan LJG, Nimlos D, Alonso-Martinez C, Baidoo EEK, Chen Y, Gin JW, Katz L, Petzold CJ, Adams PD, Keasling JD. Structural Mechanism of Regioselectivity in an Unusual Bacterial Acyl-CoA Dehydrogenase. J Am Chem Soc. 2020 Jan 15;142(2):835-846. doi: 10.1021/jacs.9b09187. Epub 2020 Jan 2. PubMed PMID: 31793780.
Moriarty NW, Janowski PA, Swails JM, Nguyen H, Richardson JS, Case DA, Adams PD. Improved chemistry restraints for crystallographic refinement by integrating the Amber force field into Phenix. Acta Crystallogr D Struct Biol. 2020 Jan 1;76(Pt 1):51-62. doi: 10.1107/S2059798319015134. Epub 2020 Jan 1. PubMed PMID: 31909743; PubMed Central PMCID: PMC6939439.
Terwilliger TC, Adams PD, Afonine PV, Sobolev OV. Cryo-EM map interpretation and protein model-building using iterative map segmentation. Protein Sci. 2020 Jan;29(1):87-99. doi: 10.1002/pro.3740. Epub 2019 Oct 24. PubMed PMID: 31599033; PubMed Central PMCID: PMC6933853.
Berman HM, Adams PD, Bonvin AA, Burley SK, Carragher B, Chiu W, DiMaio F, Ferrin TE, Gabanyi MJ, Goddard TD, Griffin PR, Haas J, Hanke CA, Hoch JC, Hummer G, Kurisu G, Lawson CL, Leitner A, Markley JL, Meiler J, Montelione GT, Phillips GN Jr, Prisner T, Rappsilber J, Schriemer DC, Schwede T, Seidel CAM, Strutzenberg TS, Svergun DI, Tajkhorshid E, Trewhella J, Vallat B, Velankar S, Vuister GW, Webb B, Westbrook JD, White KL, Sali A. Federating Structural Models and Data: Outcomes from A Workshop on Archiving Integrative Structures. Structure. 2019 Dec 3;27(12):1745-1759. doi: 10.1016/j.str.2019.11.002. Epub 2019 Nov 25. PubMed PMID: 31780431; PubMed Central PMCID: PMC7108332.
Kang A, Mendez-Perez D, Goh EB, Baidoo EEK, Benites VT, Beller HR, Keasling JD, Adams PD, Mukhopadhyay A, Lee TS. Optimization of the IPP-bypass mevalonate pathway and fed-batch fermentation for the production of isoprenol in Escherichia coli. Metab Eng. 2019 Dec;56:85-96. doi: 10.1016/j.ymben.2019.09.003. Epub 2019 Sep 6. PubMed PMID: 31499175.
Chen Y, Guenther JM, Gin JW, Chan LJG, Costello Z, Ogorzalek TL, Tran HM, Blake-Hedges JM, Keasling JD, Adams PD, García Martín H, Hillson NJ, Petzold CJ. Automated "Cells-To-Peptides" Sample Preparation Workflow for High-Throughput, Quantitative Proteomic Assays of Microbes. J Proteome Res. 2019 Oct 4;18(10):3752-3761. doi: 10.1021/acs.jproteome.9b00455. Epub 2019 Aug 30. PubMed PMID: 31436101.
Liebschner D, Afonine PV, Baker ML, Bunkóczi G, Chen VB, Croll TI, Hintze B, Hung LW, Jain S, McCoy AJ, Moriarty NW, Oeffner RD, Poon BK, Prisant MG, Read RJ, Richardson JS, Richardson DC, Sammito MD, Sobolev OV, Stockwell DH, Terwilliger TC, Urzhumtsev AG, Videau LL, Williams CJ, Adams PD. Macromolecular structure determination using X-rays, neutrons and electrons: recent developments in Phenix. Acta Crystallogr D Struct Biol. 2019 Oct 1;75(Pt 10):861-877. doi: 10.1107/S2059798319011471. Epub 2019 Oct 2. PubMed PMID: 31588918; PubMed Central PMCID: PMC6778852.
Kim DN, Moriarty NW, Kirmizialtin S, Afonine PV, Poon B, Sobolev OV, Adams PD, Sanbonmatsu K. Cryo_fit: Democratization of flexible fitting for cryo-EM. J Struct Biol. 2019 Oct 1;208(1):1-6. doi: 10.1016/j.jsb.2019.05.012. Epub 2019 Jul 3. PubMed PMID: 31279069; PubMed Central PMCID: PMC7112765.
Barajas JF, McAndrew RP, Thompson MG, Backman TWH, Pang B, de Rond T, Pereira JH, Benites VT, Martín HG, Baidoo EEK, Hillson NJ, Adams PD, Keasling JD. Structural insights into dehydratase substrate selection for the borrelidin and fluvirucin polyketide synthases. J Ind Microbiol Biotechnol. 2019 Aug;46(8):1225-1235. doi: 10.1007/s10295-019-02189-z. Epub 2019 May 21. PubMed PMID: 31115703; PubMed Central PMCID: PMC6697708.
Dong J, Chen Y, Benites VT, Baidoo EEK, Petzold CJ, Beller HR, Eudes A, Scheller HV, Adams PD, Mukhopadhyay A, Simmons BA, Singer SW. Methyl ketone production by Pseudomonas putida is enhanced by plant-derived amino acids. Biotechnol Bioeng. 2019 Aug;116(8):1909-1922. doi: 10.1002/bit.26995. Epub 2019 Apr 29. PubMed PMID: 30982958.
Thompson MG, Blake-Hedges JM, Cruz-Morales P, Barajas JF, Curran SC, Eiben CB, Harris NC, Benites VT, Gin JW, Sharpless WA, Twigg FF, Skyrud W, Krishna RN, Pereira JH, Baidoo EEK, Petzold CJ, Adams PD, Arkin AP, Deutschbauer AM, Keasling JD. Massively Parallel Fitness Profiling Reveals Multiple Novel Enzymes in Pseudomonas putida Lysine Metabolism. mBio. 2019 May 7;10(3). doi: 10.1128/mBio.02577-18. PubMed PMID: 31064836; PubMed Central PMCID: PMC6509195.
Adams PD, Afonine PV, Baskaran K, Berman HM, Berrisford J, Bricogne G, Brown DG, Burley SK, Chen M, Feng Z, Flensburg C, Gutmanas A, Hoch JC, Ikegawa Y, Kengaku Y, Krissinel E, Kurisu G, Liang Y, Liebschner D, Mak L, Markley JL, Moriarty NW, Murshudov GN, Noble M, Peisach E, Persikova I, Poon BK, Sobolev OV, Ulrich EL, Velankar S, Vonrhein C, Westbrook J, Wojdyr M, Yokochi M, Young JY. Announcing mandatory submission of PDBx/mmCIF format files for crystallographic depositions to the Protein Data Bank (PDB). Acta Crystallogr D Struct Biol. 2019 Apr 1;75(Pt 4):451-454. doi: 10.1107/S2059798319004522. Epub 2019 Apr 8. PubMed PMID: 30988261; PubMed Central PMCID: PMC6465986.
Chen Y, Vu J, Thompson MG, Sharpless WA, Chan LJG, Gin JW, Keasling JD, Adams PD, Petzold CJ. A rapid methods development workflow for high-throughput quantitative proteomic applications. PLoS One. 2019;14(2):e0211582. doi: 10.1371/journal.pone.0211582. eCollection 2019. PubMed PMID: 30763335; PubMed Central PMCID: PMC6375547.
Moriarty NW, Adams PD. Iron-sulfur clusters have no right angles. Acta Crystallogr D Struct Biol. 2019 Jan 1;75(Pt 1):16-20. doi: 10.1107/S205979831801519X. Epub 2019 Jan 4. PubMed PMID: 30644841; PubMed Central PMCID: PMC6333285.
Ge X, Vaccaro BJ, Thorgersen MP, Poole FL 2nd, Majumder EL, Zane GM, De León KB, Lancaster WA, Moon JW, Paradis CJ, von Netzer F, Stahl DA, Adams PD, Arkin AP, Wall JD, Hazen TC, Adams MWW. Iron- and aluminium-induced depletion of molybdenum in acidic environments impedes the nitrogen cycle. Environ Microbiol. 2019 Jan;21(1):152-163. doi: 10.1111/1462-2920.14435. Epub 2018 Nov 21. PubMed PMID: 30289197.
Kern J, Chatterjee R, Young ID, Fuller FD, Lassalle L, Ibrahim M, Gul S, Fransson T, Brewster AS, Alonso-Mori R, Hussein R, Zhang M, Douthit L, de Lichtenberg C, Cheah MH, Shevela D, Wersig J, Seuffert I, Sokaras D, Pastor E, Weninger C, Kroll T, Sierra RG, Aller P, Butryn A, Orville AM, Liang M, Batyuk A, Koglin JE, Carbajo S, Boutet S, Moriarty NW, Holton JM, Dobbek H, Adams PD, Bergmann U, Sauter NK, Zouni A, Messinger J, Yano J, Yachandra VK. Structures of the intermediates of Kok's photosynthetic water oxidation clock. Nature. 2018 Nov;563(7731):421-425. doi: 10.1038/s41586-018-0681-2. Epub 2018 Nov 7. PubMed PMID: 30405241; PubMed Central PMCID: PMC6485242.
Terwilliger TC, Adams PD, Afonine PV, Sobolev OV. A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps. Nat Methods. 2018 Nov;15(11):905-908. doi: 10.1038/s41592-018-0173-1. Epub 2018 Oct 30. PubMed PMID: 30377346; PubMed Central PMCID: PMC6214191.
Terwilliger TC, Adams PD, Afonine PV, Sobolev OV. Map segmentation, automated model-building and their application to the Cryo-EM Model Challenge. J Struct Biol. 2018 Nov;204(2):338-343. doi: 10.1016/j.jsb.2018.07.016. Epub 2018 Jul 29. PubMed PMID: 30063987; PubMed Central PMCID: PMC6163059.
Ruegg TL, Pereira JH, Chen JC, DeGiovanni A, Novichkov P, Mutalik VK, Tomaleri GP, Singer SW, Hillson NJ, Simmons BA, Adams PD, Thelen MP. Author Correction: Jungle Express is a versatile repressor system for tight transcriptional control. Nat Commun. 2018 Oct 30;9(1):4596. doi: 10.1038/s41467-018-07111-2. PubMed PMID: 30375402; PubMed Central PMCID: PMC6207686.
Liu CL, Tian T, Alonso-Gutierrez J, Garabedian B, Wang S, Baidoo EEK, Benites V, Chen Y, Petzold CJ, Adams PD, Keasling JD, Tan T, Lee TS. Renewable production of high density jet fuel precursor sesquiterpenes from Escherichia coli. Biotechnol Biofuels. 2018;11:285. doi: 10.1186/s13068-018-1272-z. eCollection 2018. PubMed PMID: 30377444; PubMed Central PMCID: PMC6195743.
Kryshtafovych A, Adams PD, Lawson CL, Chiu W. Evaluation system and web infrastructure for the second cryo-EM model challenge. J Struct Biol. 2018 Oct;204(1):96-108. doi: 10.1016/j.jsb.2018.07.006. Epub 2018 Jul 12. PubMed PMID: 30017700; PubMed Central PMCID: PMC6205695.
Kryshtafovych A, Monastyrskyy B, Adams PD, Lawson CL, Chiu W. Distribution of evaluation scores for the models submitted to the second cryo-EM model challenge. Data Brief. 2018 Oct;20:1629-1638. doi: 10.1016/j.dib.2018.08.214. eCollection 2018 Oct. PubMed PMID: 30263915; PubMed Central PMCID: PMC6157618.
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