My Bibliography

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Ha JH, Borzage MT, Vanstrum EB, Doyle EK, Upreti M, Tamrazi B, Nelson M, Blüml S, Johal MS, McComb JG, Chu J, Durham S, Krieger MD, Moats RA, Chiarelli PA. Quantitative noninvasive measurement of cerebrospinal fluid flow in shunted hydrocephalus. J Neurosurg. 2024 Apr 1;140(4):1117-1128. doi: 10.3171/2023.7.JNS231326. Print 2024 Apr 1. PubMed PMID: 38564811; PubMed Central PMCID: PMC11409908.

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Al-Husseini JK, Fong EM, Wang C, Ha JH, Upreti M, Chiarelli PA, Johal MS. Ex Vivo Drug Screening Assay with Artificial Membranes: Characterizing Cholesterol Desorbing Competencies of Beta-Cyclodextrins. Langmuir. 2023 Sep 12;39(36):12590-12598. doi: 10.1021/acs.langmuir.3c01173. Epub 2023 Aug 31. PubMed PMID: 37651551.

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Vanstrum EB, Borzage MT, Ha J, Chu J, Upreti M, Moats RA, Lai LM, Chiarelli PA. Development of an ultrafast brain MR neuronavigation protocol for ventricular shunt placement. J Neurosurg. 2023 Feb 1;138(2):367-373. doi: 10.3171/2022.5.JNS22767. Print 2023 Feb 1. PubMed PMID: 35901769; PubMed Central PMCID: PMC10338062.

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Chiarelli PA, Revia RA, Stephen ZR, Wang K, Kievet FM, Sandhu J, Upreti M, Chung S, Ellenbogen RG, Zhang M. Iron oxide nanoparticle-mediated radiation delivery for glioblastoma treatment. Materialstoday. 2022 April; 56(June 2022):66-78.

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Upreti M. Tumor Tissue Analogs for the Assessment of Radioresistance in Cancer Stem Cells. Methods Mol Biol. 2018;1692:117-128. doi: 10.1007/978-1-4939-7401-6_11. PubMed PMID: 28986892.

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Nagarajan R, Upreti M. An ensemble predictive modeling framework for breast cancer classification. Methods. 2017 Dec 1;131:128-134. doi: 10.1016/j.ymeth.2017.07.011. Epub 2017 Jul 15. PubMed PMID: 28716511.

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Stocke NA, Sethi P, Jyoti A, Chan R, Arnold SM, Hilt JZ, Upreti M. Toxicity evaluation of magnetic hyperthermia induced by remote actuation of magnetic nanoparticles in 3D micrometastasic tumor tissue analogs for triple negative breast cancer. Biomaterials. 2017 Mar;120:115-125. doi: 10.1016/j.biomaterials.2016.12.019. Epub 2016 Dec 23. PubMed PMID: 28056401; PubMed Central PMCID: PMC5267939.

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Nagarajan R, Upreti M. An approach for deciphering patient-specific variations with application to breast cancer molecular expression profiles. J Biomed Inform. 2016 Oct;63:120-130. doi: 10.1016/j.jbi.2016.07.022. Epub 2016 Jul 28. PubMed PMID: 27477838.

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Upreti M, Jyoti A, Johnson SE, Swindell EP, Napier D, Sethi P, Chan R, Feddock JM, Weiss HL, O'Halloran TV, Evers BM. Radiation-enhanced therapeutic targeting of galectin-1 enriched malignant stroma in triple negative breast cancer. Oncotarget. 2016 Jul 5;7(27):41559-41574. doi: 10.18632/oncotarget.9490. PubMed PMID: 27223428; PubMed Central PMCID: PMC5173078.

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Chan R, Sethi P, Jyoti A, McGarry R, Upreti M. Investigating the Radioresistant Properties of Lung Cancer Stem Cells in the Context of the Tumor Microenvironment. Radiat Res. 2016 Feb;185(2):169-81. doi: 10.1667/RR14285.1. Epub 2016 Feb 2. PubMed PMID: 26836231; PubMed Central PMCID: PMC4762254.

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Sethi P, Jyoti A, Swindell EP, Chan R, Langner UW, Feddock JM, Nagarajan R, O'Halloran TV, Upreti M. 3D tumor tissue analogs and their orthotopic implants for understanding tumor-targeting of microenvironment-responsive nanosized chemotherapy and radiation. Nanomedicine. 2015 Nov;11(8):2013-23. doi: 10.1016/j.nano.2015.07.013. Epub 2015 Aug 15. PubMed PMID: 26282381; PubMed Central PMCID: PMC4548830.

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Jyoti A, Fugit KD, Sethi P, McGarry RC, Anderson BD, Upreti M. An in vitro assessment of liposomal topotecan simulating metronomic chemotherapy in combination with radiation in tumor-endothelial spheroids. Sci Rep. 2015 Oct 15;5:15236. doi: 10.1038/srep15236. PubMed PMID: 26468877; PubMed Central PMCID: PMC4606561.

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Fugit KD, Jyoti A, Upreti M, Anderson BD. Insights into accelerated liposomal release of topotecan in plasma monitored by a non-invasive fluorescence spectroscopic method. J Control Release. 2015 Jan 10;197:10-9. doi: 10.1016/j.jconrel.2014.10.011. Epub 2014 Oct 25. PubMed PMID: 25456833; PubMed Central PMCID: PMC4356028.

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Upreti M, Jyoti A, Sethi P. Tumor microenvironment and nanotherapeutics. Transl Cancer Res. 2013 Aug 1;2(4):309-319. doi: 10.3978/j.issn.2218-676X.2013.08.11. PubMed PMID: 24634853; PubMed Central PMCID: PMC3951160.

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Upreti M, Jamshidi-Parsian A, Apana S, Berridge M, Fologea DA, Koonce NA, Henry RL, Griffin RJ. Radiation-induced galectin-1 by endothelial cells: a promising molecular target for preferential drug delivery to the tumor vasculature. J Mol Med (Berl). 2013 Apr;91(4):497-506. doi: 10.1007/s00109-012-0965-1. Epub 2012 Oct 23. PubMed PMID: 23090010; PubMed Central PMCID: PMC3586987.

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Griffin RJ, Williams BW, Koonce NA, Bischof JC, Song CW, Asur R, Upreti M. Vascular disrupting agent arsenic trioxide enhances thermoradiotherapy of solid tumors. J Oncol. 2012;2012:934918. doi: 10.1155/2012/934918. Epub 2012 Jan 4. PubMed PMID: 22272199; PubMed Central PMCID: PMC3261488.

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Upreti M, Jamshidi-Parsian A, Koonce NA, Webber JS, Sharma SK, Asea AA, Mader MJ, Griffin RJ. Tumor-Endothelial Cell Three-dimensional Spheroids: New Aspects to Enhance Radiation and Drug Therapeutics. Transl Oncol. 2011 Dec;4(6):365-76. doi: 10.1593/tlo.11187. Epub 2011 Dec 1. PubMed PMID: 22191001; PubMed Central PMCID: PMC3243660.

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Nagarajan R, Upreti M. Inferring functional relationships and causal network structure from gene expression profiles. Methods Enzymol. 2011;487:133-46. doi: 10.1016/B978-0-12-381270-4.00005-6. PubMed PMID: 21187224.

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Nagarajan R, Upreti M. Granger causality analysis of human cell-cycle gene expression profiles. Stat Appl Genet Mol Biol. 2010;9:Article31. doi: 10.2202/1544-6115.1555. Epub 2010 Aug 13. PubMed PMID: 20812909.

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Terrano DT, Upreti M, Chambers TC. Cyclin-dependent kinase 1-mediated Bcl-xL/Bcl-2 phosphorylation acts as a functional link coupling mitotic arrest and apoptosis. Mol Cell Biol. 2010 Feb;30(3):640-56. doi: 10.1128/MCB.00882-09. Epub 2009 Nov 16. PubMed PMID: 19917720; PubMed Central PMCID: PMC2812246.

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Upreti M, Koonce NA, Hennings L, Chambers TC, Griffin RJ. Pegylated IFN-α sensitizes melanoma cells to chemotherapy and causes premature senescence in endothelial cells by IRF-1 mediated signaling. Cell Death Dis. 2010;1(8):e67. doi: 10.1038/cddis.2010.43. PubMed PMID: 21197417; PubMed Central PMCID: PMC3010727.

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Bateman TD, Joshi AL, Moon K, Galitovskaya EN, Upreti M, Chambers TC, McIntosh MC. Synthesis and anticancer activity of sclerophytin-inspired hydroisobenzofurans. Bioorg Med Chem Lett. 2009 Dec 15;19(24):6898-901. doi: 10.1016/j.bmcl.2009.10.079. Epub 2009 Oct 22. PubMed PMID: 19896844; PubMed Central PMCID: PMC3276365.

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Chu R, Upreti M, Ding WX, Yin XM, Chambers TC. Regulation of Bax by c-Jun NH2-terminal kinase and Bcl-xL in vinblastine-induced apoptosis. Biochem Pharmacol. 2009 Aug 1;78(3):241-8. doi: 10.1016/j.bcp.2009.04.005. Epub 2009 Apr 14. PubMed PMID: 19427996; PubMed Central PMCID: PMC2692743.

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Upreti M, Galitovskaya EN, Chu R, Tackett AJ, Terrano DT, Granell S, Chambers TC. Identification of the major phosphorylation site in Bcl-xL induced by microtubule inhibitors and analysis of its functional significance. J Biol Chem. 2008 Dec 19;283(51):35517-25. doi: 10.1074/jbc.M805019200. Epub 2008 Oct 30. PubMed PMID: 18974096; PubMed Central PMCID: PMC2602892.

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Upreti M, Chu R, Galitovskaya E, Smart SK, Chambers TC. Key role for Bak activation and Bak-Bax interaction in the apoptotic response to vinblastine. Mol Cancer Ther. 2008 Jul;7(7):2224-32. doi: 10.1158/1535-7163.MCT-07-2299. PubMed PMID: 18645031; PubMed Central PMCID: PMC3276366.

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Nagarajan R, Upreti M. Comment on causality and pathway search in microarray time series experiment. Bioinformatics. 2008 Apr 1;24(7):1029-32; author reply 1033. doi: 10.1093/bioinformatics/btm586. Epub 2008 Feb 26. PubMed PMID: 18304931; PubMed Central PMCID: PMC2679500.

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Kolomeichuk SN, Bene A, Upreti M, Dennis RA, Lyle CS, Rajasekaran M, Chambers TC. Induction of apoptosis by vinblastine via c-Jun autoamplification and p53-independent down-regulation of p21WAF1/CIP1. Mol Pharmacol. 2008 Jan;73(1):128-36. doi: 10.1124/mol.108.039750. PubMed PMID: 18094076.

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Nagarajan R, Upreti M. Correlation statistics for cDNA microarray image analysis. IEEE/ACM Trans Comput Biol Bioinform. 2006 Jul-Sep;3(3):232-8. doi: 10.1109/TCBB.2006.30. PubMed PMID: 17048461.

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Upreti M, Lyle CS, Skaug B, Du L, Chambers TC. Vinblastine-induced apoptosis is mediated by discrete alterations in subcellular location, oligomeric structure, and activation status of specific Bcl-2 family members. J Biol Chem. 2006 Jun 9;281(23):15941-50. doi: 10.1074/jbc.M512586200. Epub 2006 Mar 30. PubMed PMID: 16574665; PubMed Central PMCID: PMC1656399.

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Upreti M, Rath PC. Expression and DNA binding activity of the recombinant interferon regulatory factor-1 (IRF-1) of mouse. Mol Biol Rep. 2005 Jun;32(2):103-16. doi: 10.1007/s11033-004-6940-3. PubMed PMID: 16022283.

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Padmavathi B, Upreti M, Singh V, Rao AR, Singh RP, Rath PC. Chemoprevention by Hippophae rhamnoides: effects on tumorigenesis, phase II and antioxidant enzymes, and IRF-1 transcription factor. Nutr Cancer. 2005;51(1):59-67. doi: 10.1207/s15327914nc5101_9. PubMed PMID: 15749631.

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Upreti M, Kumar S, Rath PC. Replacement of 198MQMDII203 of mouse IRF-1 by 197IPVEVV202 of human IRF-1 abrogates induction of IFN-beta, iNOS, and COX-2 gene expression by IRF-1. Biochem Biophys Res Commun. 2004 Feb 13;314(3):737-44. doi: 10.1016/j.bbrc.2003.12.156. PubMed PMID: 14741697.

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Agrawal A, Choudhary D, Upreti M, Rath PC, Kale RK. Radiation induced oxidative stress: I. Studies in Ehrlich solid tumor in mice. Mol Cell Biochem. 2001 Jul;223(1-2):71-80. doi: 10.1023/a:1017900810837. PubMed PMID: 11681724.