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D'Souza NS, Nebel MB, Crocetti D, Robinson J, Wymbs N, Mostofsky SH, Venkataraman A. Deep sr-DDL: Deep structurally regularized dynamic dictionary learning to integrate multimodal and dynamic functional connectomics data for multidimensional clinical characterizations. Neuroimage. 2021 Nov 1;241:118388. doi: 10.1016/j.neuroimage.2021.118388. Epub 2021 Jul 14. PubMed PMID: 34271159; PubMed Central PMCID: PMC8528511.
Augustine F, Nebel MB, Mostofsky SH, Mahone EM, Singer HS. Aberrant prefrontal cortical-striatal functional connectivity in children with primary complex motor stereotypies. Cortex. 2021 Sep;142:272-282. doi: 10.1016/j.cortex.2021.05.022. Epub 2021 Jun 24. PubMed PMID: 34303880; PubMed Central PMCID: PMC8405561.
Duffy KA, Rosch KS, Nebel MB, Seymour KE, Lindquist MA, Pekar JJ, Mostofsky SH, Cohen JR. Increased integration between default mode and task-relevant networks in children with ADHD is associated with impaired response control. Dev Cogn Neurosci. 2021 Aug;50:100980. doi: 10.1016/j.dcn.2021.100980. Epub 2021 Jun 22. PubMed PMID: 34252881; PubMed Central PMCID: PMC8278154.
Chen C, Lidstone D, Crocetti D, Mostofsky SH, Nebel MB. Increased interhemispheric somatomotor functional connectivity and mirror overflow in ADHD. Neuroimage Clin. 2021;31:102759. doi: 10.1016/j.nicl.2021.102759. Epub 2021 Jul 10. PubMed PMID: 34280835; PubMed Central PMCID: PMC8319349.
Risk BB, Murden RJ, Wu J, Nebel MB, Venkataraman A, Zhang Z, Qiu D. Which multiband factor should you choose for your resting-state fMRI study?. Neuroimage. 2021 Jul 1;234:117965. doi: 10.1016/j.neuroimage.2021.117965. Epub 2021 Mar 17. PubMed PMID: 33744454; PubMed Central PMCID: PMC8159874.
Schirmer MD, Venkataraman A, Rekik I, Kim M, Mostofsky SH, Nebel MB, Rosch K, Seymour K, Crocetti D, Irzan H, Hütel M, Ourselin S, Marlow N, Melbourne A, Levchenko E, Zhou S, Kunda M, Lu H, Dvornek NC, Zhuang J, Pinto G, Samal S, Zhang J, Bernal-Rusiel JL, Pienaar R, Chung AW. Neuropsychiatric disease classification using functional connectomics - results of the connectomics in neuroimaging transfer learning challenge. Med Image Anal. 2021 May;70:101972. doi: 10.1016/ Epub 2021 Jan 28. PubMed PMID: 33677261; NIHMSID:NIHMS1690118.
Wymbs NF, Nebel MB, Ewen JB, Mostofsky SH. Altered Inferior Parietal Functional Connectivity is Correlated with Praxis and Social Skill Performance in Children with Autism Spectrum Disorder. Cereb Cortex. 2021 Mar 31;31(5):2639-2652. doi: 10.1093/cercor/bhaa380. PubMed PMID: 33386399; PubMed Central PMCID: PMC8023826.
Lidstone DE, Rochowiak R, Mostofsky SH, Nebel MB. A Data Driven Approach Reveals That Anomalous Motor System Connectivity is Associated With the Severity of Core Autism Symptoms. Autism Res. 2021 Jan 22;. doi: 10.1002/aur.2476. [Epub ahead of print] PubMed PMID: 33484109; NIHMSID:NIHMS1690119.
Henry TR, Duffy KA, Rudolph MD, Nebel MB, Mostofsky SH, Cohen JR. Bridging global and local topology in whole-brain networks using the network statistic jackknife. Netw Neurosci. 2020;4(1):70-88. doi: 10.1162/netn_a_00109. eCollection 2020. PubMed PMID: 32043044; PubMed Central PMCID: PMC7006875.
D'Souza NS, Nebel MB, Wymbs N, Mostofsky SH, Venkataraman A. A joint network optimization framework to predict clinical severity from resting state functional MRI data. Neuroimage. 2020 Feb 1;206:116314. doi: 10.1016/j.neuroimage.2019.116314. Epub 2019 Oct 31. PubMed PMID: 31678501; PubMed Central PMCID: PMC7985860.
Mejia AF, Nebel MB, Wang Y, Caffo BS, Guo Y. Template Independent Component Analysis: Targeted and Reliable Estimation of Subject-level Brain Networks using Big Data Population Priors. J Am Stat Assoc. 2020;115(531):1151-1177. doi: 10.1080/01621459.2019.1679638. Epub 2019 Nov 21. PubMed PMID: 33060872; PubMed Central PMCID: PMC7556739.
Dajani DR, Burrows CA, Nebel MB, Mostofsky SH, Gates KM, Uddin LQ. Parsing Heterogeneity in Autism Spectrum Disorder and Attention-Deficit/Hyperactivity Disorder with Individual Connectome Mapping. Brain Connect. 2019 Nov;9(9):673-691. doi: 10.1089/brain.2019.0669. PubMed PMID: 31631690; PubMed Central PMCID: PMC6862970.
Dajani DR, Burrows CA, Odriozola P, Baez A, Nebel MB, Mostofsky SH, Uddin LQ. Investigating functional brain network integrity using a traditional and novel categorical scheme for neurodevelopmental disorders. Neuroimage Clin. 2019;21:101678. doi: 10.1016/j.nicl.2019.101678. Epub 2019 Jan 17. PubMed PMID: 30708240; PubMed Central PMCID: PMC6356009.
Rosch KS, Mostofsky SH, Nebel MB. ADHD-related sex differences in fronto-subcortical intrinsic functional connectivity and associations with delay discounting. J Neurodev Disord. 2018 Dec 13;10(1):34. doi: 10.1186/s11689-018-9254-9. PubMed PMID: 30541434; PubMed Central PMCID: PMC6292003.
Mejia AF, Nebel MB, Barber AD, Choe AS, Pekar JJ, Caffo BS, Lindquist MA. Improved estimation of subject-level functional connectivity using full and partial correlation with empirical Bayes shrinkage. Neuroimage. 2018 May 15;172:478-491. doi: 10.1016/j.neuroimage.2018.01.029. Epub 2018 Feb 14. PubMed PMID: 29391241; PubMed Central PMCID: PMC5957759.
Stoodley CJ, D'Mello AM, Ellegood J, Jakkamsetti V, Liu P, Nebel MB, Gibson JM, Kelly E, Meng F, Cano CA, Pascual JM, Mostofsky SH, Lerch JP, Tsai PT. Altered cerebellar connectivity in autism and cerebellar-mediated rescue of autism-related behaviors in mice. Nat Neurosci. 2017 Dec;20(12):1744-1751. doi: 10.1038/s41593-017-0004-1. Epub 2017 Oct 30. PubMed PMID: 29184200; PubMed Central PMCID: PMC5867894.
Stephens JA, Salorio CF, Gomes JP, Nebel MB, Mostofsky SH, Suskauer SJ. Response Inhibition Deficits and Altered Motor Network Connectivity in the Chronic Phase of Pediatric Traumatic Brain Injury. J Neurotrauma. 2017 Nov 15;34(22):3117-3123. doi: 10.1089/neu.2017.5081. Epub 2017 Aug 4. PubMed PMID: 28648110; PubMed Central PMCID: PMC5678360.
Calhoun VD, Wager TD, Krishnan A, Rosch KS, Seymour KE, Nebel MB, Mostofsky SH, Nyalakanai P, Kiehl K. The impact of T1 versus EPI spatial normalization templates for fMRI data analyses. Hum Brain Mapp. 2017 Nov;38(11):5331-5342. doi: 10.1002/hbm.23737. Epub 2017 Jul 26. PubMed PMID: 28745021; PubMed Central PMCID: PMC5565844.
Choe AS, Nebel MB, Barber AD, Cohen JR, Xu Y, Pekar JJ, Caffo B, Lindquist MA. Comparing test-retest reliability of dynamic functional connectivity methods. Neuroimage. 2017 Sep;158:155-175. doi: 10.1016/j.neuroimage.2017.07.005. Epub 2017 Jul 5. PubMed PMID: 28687517; PubMed Central PMCID: PMC5614828.
Mejia AF, Nebel MB, Eloyan A, Caffo B, Lindquist MA. PCA leverage: outlier detection for high-dimensional functional magnetic resonance imaging data. Biostatistics. 2017 Jul 1;18(3):521-536. doi: 10.1093/biostatistics/kxw050. PubMed PMID: 28334131; PubMed Central PMCID: PMC5862350.
Di Martino A, O'Connor D, Chen B, Alaerts K, Anderson JS, Assaf M, Balsters JH, Baxter L, Beggiato A, Bernaerts S, Blanken LM, Bookheimer SY, Braden BB, Byrge L, Castellanos FX, Dapretto M, Delorme R, Fair DA, Fishman I, Fitzgerald J, Gallagher L, Keehn RJ, Kennedy DP, Lainhart JE, Luna B, Mostofsky SH, Müller RA, Nebel MB, Nigg JT, O'Hearn K, Solomon M, Toro R, Vaidya CJ, Wenderoth N, White T, Craddock RC, Lord C, Leventhal B, Milham MP. Enhancing studies of the connectome in autism using the autism brain imaging data exchange II. Sci Data. 2017 Mar 14;4:170010. doi: 10.1038/sdata.2017.10. PubMed PMID: 28291247; PubMed Central PMCID: PMC5349246.
Chen S, Huang L, Qiu H, Nebel MB, Mostofsky SH, Pekar JJ, Lindquist MA, Eloyan A, Caffo BS. Parallel group independent component analysis for massive fMRI data sets. PLoS One. 2017;12(3):e0173496. doi: 10.1371/journal.pone.0173496. eCollection 2017. PubMed PMID: 28278208; PubMed Central PMCID: PMC5344430.
Dajani DR, Llabre MM, Nebel MB, Mostofsky SH, Uddin LQ. Heterogeneity of executive functions among comorbid neurodevelopmental disorders. Sci Rep. 2016 Nov 9;6:36566. doi: 10.1038/srep36566. PubMed PMID: 27827406; PubMed Central PMCID: PMC5101520.
Floris DL, Barber AD, Nebel MB, Martinelli M, Lai MC, Crocetti D, Baron-Cohen S, Suckling J, Pekar JJ, Mostofsky SH. Atypical lateralization of motor circuit functional connectivity in children with autism is associated with motor deficits. Mol Autism. 2016;7:35. doi: 10.1186/s13229-016-0096-6. eCollection 2016. PubMed PMID: 27429731; PubMed Central PMCID: PMC4946094.
Landa RJ, Haworth JL, Nebel MB. Ready, Set, Go! Low Anticipatory Response during a Dyadic Task in Infants at High Familial Risk for Autism. Front Psychol. 2016;7:721. doi: 10.3389/fpsyg.2016.00721. eCollection 2016. PubMed PMID: 27252667; PubMed Central PMCID: PMC4879330.
Nebel MB, Eloyan A, Nettles CA, Sweeney KL, Ament K, Ward RE, Choe AS, Barber AD, Pekar JJ, Mostofsky SH. Intrinsic Visual-Motor Synchrony Correlates With Social Deficits in Autism. Biol Psychiatry. 2016 Apr 15;79(8):633-41. doi: 10.1016/j.biopsych.2015.08.029. Epub 2015 Sep 3. PubMed PMID: 26543004; PubMed Central PMCID: PMC4777671.
Sharer E, Crocetti D, Muschelli J, Barber AD, Nebel MB, Caffo BS, Pekar JJ, Mostofsky SH. Neural Correlates of Visuomotor Learning in Autism. J Child Neurol. 2015 Dec;30(14):1877-86. doi: 10.1177/0883073815600869. Epub 2015 Sep 8. PubMed PMID: 26350725; PubMed Central PMCID: PMC4941625.
Mejia AF, Nebel MB, Shou H, Crainiceanu CM, Pekar JJ, Mostofsky S, Caffo B, Lindquist MA. Improving reliability of subject-level resting-state fMRI parcellation with shrinkage estimators. Neuroimage. 2015 May 15;112:14-29. doi: 10.1016/j.neuroimage.2015.02.042. Epub 2015 Feb 28. PubMed PMID: 25731998; PubMed Central PMCID: PMC4408254.
Barber AD, Jacobson LA, Wexler JL, Nebel MB, Caffo BS, Pekar JJ, Mostofsky SH. Connectivity supporting attention in children with attention deficit hyperactivity disorder. Neuroimage Clin. 2015;7:68-81. doi: 10.1016/j.nicl.2014.11.011. eCollection 2015. PubMed PMID: 25610768; PubMed Central PMCID: PMC4299959.
Shou H, Eloyan A, Nebel MB, Mejia A, Pekar JJ, Mostofsky S, Caffo B, Lindquist MA, Crainiceanu CM. Shrinkage prediction of seed-voxel brain connectivity using resting state fMRI. Neuroimage. 2014 Nov 15;102 Pt 2:938-44. doi: 10.1016/j.neuroimage.2014.05.043. Epub 2014 May 29. PubMed PMID: 24879924; PubMed Central PMCID: PMC4247825.
Lindquist MA, Xu Y, Nebel MB, Caffo BS. Evaluating dynamic bivariate correlations in resting-state fMRI: a comparison study and a new approach. Neuroimage. 2014 Nov 1;101:531-46. doi: 10.1016/j.neuroimage.2014.06.052. Epub 2014 Jun 30. PubMed PMID: 24993894; PubMed Central PMCID: PMC4165690.
Eloyan A, Shou H, Shinohara RT, Sweeney EM, Nebel MB, Cuzzocreo JL, Calabresi PA, Reich DS, Lindquist MA, Crainiceanu CM. Health effects of lesion localization in multiple sclerosis: spatial registration and confounding adjustment. PLoS One. 2014;9(9):e107263. doi: 10.1371/journal.pone.0107263. eCollection 2014. PubMed PMID: 25233361; PubMed Central PMCID: PMC4169434.
Muschelli J, Nebel MB, Caffo BS, Barber AD, Pekar JJ, Mostofsky SH. Reduction of motion-related artifacts in resting state fMRI using aCompCor. Neuroimage. 2014 Aug 1;96:22-35. doi: 10.1016/j.neuroimage.2014.03.028. Epub 2014 Mar 18. PubMed PMID: 24657780; PubMed Central PMCID: PMC4043948.
Di Martino A, Yan CG, Li Q, Denio E, Castellanos FX, Alaerts K, Anderson JS, Assaf M, Bookheimer SY, Dapretto M, Deen B, Delmonte S, Dinstein I, Ertl-Wagner B, Fair DA, Gallagher L, Kennedy DP, Keown CL, Keysers C, Lainhart JE, Lord C, Luna B, Menon V, Minshew NJ, Monk CS, Mueller S, Müller RA, Nebel MB, Nigg JT, O'Hearn K, Pelphrey KA, Peltier SJ, Rudie JD, Sunaert S, Thioux M, Tyszka JM, Uddin LQ, Verhoeven JS, Wenderoth N, Wiggins JL, Mostofsky SH, Milham MP. The autism brain imaging data exchange: towards a large-scale evaluation of the intrinsic brain architecture in autism. Mol Psychiatry. 2014 Jun;19(6):659-67. doi: 10.1038/mp.2013.78. Epub 2013 Jun 18. PubMed PMID: 23774715; PubMed Central PMCID: PMC4162310.
Nebel MB, Eloyan A, Barber AD, Mostofsky SH. Precentral gyrus functional connectivity signatures of autism. Front Syst Neurosci. 2014;8:80. doi: 10.3389/fnsys.2014.00080. eCollection 2014. PubMed PMID: 24860442; PubMed Central PMCID: PMC4030180.
Nebel MB, Joel SE, Muschelli J, Barber AD, Caffo BS, Pekar JJ, Mostofsky SH. Disruption of functional organization within the primary motor cortex in children with autism. Hum Brain Mapp. 2014 Feb;35(2):567-80. doi: 10.1002/hbm.22188. Epub 2012 Nov 1. PubMed PMID: 23118015; PubMed Central PMCID: PMC3864146.
Shou H, Eloyan A, Lee S, Zipunnikov V, Crainiceanu AN, Nebel NB, Caffo B, Lindquist MA, Crainiceanu CM. Quantifying the reliability of image replication studies: the image intraclass correlation coefficient (I2C2). Cogn Affect Behav Neurosci. 2013 Dec;13(4):714-24. doi: 10.3758/s13415-013-0196-0. PubMed PMID: 24022791; PubMed Central PMCID: PMC3869880.
Eloyan A, Muschelli J, Nebel MB, Liu H, Han F, Zhao T, Barber AD, Joel S, Pekar JJ, Mostofsky SH, Caffo B. Automated diagnoses of attention deficit hyperactive disorder using magnetic resonance imaging. Front Syst Neurosci. 2012;6:61. doi: 10.3389/fnsys.2012.00061. eCollection 2012. PubMed PMID: 22969709; PubMed Central PMCID: PMC3431009.
Cascio CJ, Moana-Filho EJ, Guest S, Nebel MB, Weisner J, Baranek GT, Essick GK. Perceptual and neural response to affective tactile texture stimulation in adults with autism spectrum disorders. Autism Res. 2012 Aug;5(4):231-44. doi: 10.1002/aur.1224. Epub 2012 Mar 23. PubMed PMID: 22447729; PubMed Central PMCID: PMC3517930.
Nebel MB, Folger S, Tommerdahl M, Hollins M, McGlone F, Essick G. Temporomandibular disorder modifies cortical response to tactile stimulation. J Pain. 2010 Nov;11(11):1083-94. doi: 10.1016/j.jpain.2010.02.021. Epub 2010 May 11. PubMed PMID: 20462805; PubMed Central PMCID: PMC2943972.
Nebel MB, Sims EL, Keefe FJ, Kraus VB, Guilak F, Caldwell DS, Pells JJ, Queen R, Schmitt D. The relationship of self-reported pain and functional impairment to gait mechanics in overweight and obese persons with knee osteoarthritis. Arch Phys Med Rehabil. 2009 Nov;90(11):1874-9. doi: 10.1016/j.apmr.2009.07.010. PubMed PMID: 19887211; PubMed Central PMCID: PMC3144251.
Nebel MB, Gracely RH. Neuroimaging of fibromyalgia. Rheum Dis Clin North Am. 2009 May;35(2):313-27. doi: 10.1016/j.rdc.2009.06.004. Review. PubMed PMID: 19647145.
Selemon LD, Wang L, Nebel MB, Csernansky JG, Goldman-Rakic PS, Rakic P. Direct and indirect effects of fetal irradiation on cortical gray and white matter volume in the macaque. Biol Psychiatry. 2005 Jan 1;57(1):83-90. doi: 10.1016/j.biopsych.2004.10.014. PubMed PMID: 15607304; PubMed Central PMCID: PMC4465560.
Ratnanather JT, Wang L, Nebel MB, Hosakere M, Han X, Csernansky JG, Miller MI. Validation of semiautomated methods for quantifying cingulate cortical metrics in schizophrenia. Psychiatry Res. 2004 Nov 15;132(1):53-68. doi: 10.1016/j.pscychresns.2004.07.003. PubMed PMID: 15546703.
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