My Bibliography

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Li H, Fang S, Goni J, contreras JA, Liang Y, Cai C, West JD, Risacher SL, Wang Y, Sporns O, Saykin AJ, Shen L. Integrated Visualization of Human Brain Connectome Data. Brain Informatics and Health, BIH 2015, LNAI 9250. Forthcoming.

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Du L, Yan J, Kim S, Risacher SL, Huang H, Inlow M, Moore JH, Saykin AJ, Shen L. GN-SCCA: GraphNet based Sparse Canonical Correlation Analysis for Brain Imaging Genetics. Brain Informatics and Health, BIH 2015, LNAI 9250. Forthcoming.

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Wang R, Bashyam V, Yang Z, Yu F, Tassopoulou V, Chintapalli SS, Skampardoni I, Sreepada LP, Sahoo D, Nikita K, Abdulkadir A, Wen J, Davatzikos C. Applications of Generative Adversarial Networks in Neuroimaging and Clinical Neuroscience. Neuroimage. 2023 Jan 23;:119898. doi: 10.1016/j.neuroimage.2023.119898. [Epub ahead of print] Review. PubMed PMID: 36702211; NIHMSID:NIHMS1869965.

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Eissman JM, Wells G, Khan OA, Liu D, Petyuk VA, Gifford KA, Dumitrescu L, Jefferson AL, Hohman TJ. Polygenic resilience score may be sensitive to preclinical Alzheimer's disease changes. Pac Symp Biocomput. 2023;28:449-460. PubMed PMID: 36540999; PubMed Central PMCID: PMC9888419.

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Swinford CG, Risacher SL, Wu YC, Apostolova LG, Gao S, Bice PJ, Saykin AJ. Altered cerebral blood flow in older adults with Alzheimer's disease: a systematic review. Brain Imaging Behav. 2022 Dec 9;. doi: 10.1007/s11682-022-00750-6. [Epub ahead of print] Review. PubMed PMID: 36484922; NIHMSID:NIHMS1858396.

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Woodward AA, Urbanowicz RJ, Naj AC, Moore JH. Genetic heterogeneity: Challenges, impacts, and methods through an associative lens. Genet Epidemiol. 2022 Dec;46(8):555-571. doi: 10.1002/gepi.22497. Epub 2022 Aug 4. Review. PubMed PMID: 35924480; PubMed Central PMCID: PMC9669229.

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Orzechowski P, Moore JH. Generative and reproducible benchmarks for comprehensive evaluation of machine learning classifiers. Sci Adv. 2022 Nov 25;8(47):eabl4747. doi: 10.1126/sciadv.abl4747. Epub 2022 Nov 23. PubMed PMID: 36417520; PubMed Central PMCID: PMC9683726.

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Grothe MJ, Moscoso A, Silva-Rodríguez J, Lange C, Nho K, Saykin AJ, Nelson PT, Schöll M, Buchert R, Teipel S. Differential diagnosis of amnestic dementia patients based on an FDG-PET signature of autopsy-confirmed LATE-NC. Alzheimers Dement. 2022 Aug 15;. doi: 10.1002/alz.12763. [Epub ahead of print] PubMed PMID: 35971593; NIHMSID:NIHMS1851259.

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Romano JD, Hao Y, Moore JH, Penning TM. Automating Predictive Toxicology Using ComptoxAI. Chem Res Toxicol. 2022 Aug 15;35(8):1370-1382. doi: 10.1021/acs.chemrestox.2c00074. Epub 2022 Jul 12. PubMed PMID: 35819939; PubMed Central PMCID: PMC9805296.

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Mukherjee S, Choi SE, Lee ML, Scollard P, Trittschuh EH, Mez J, Saykin AJ, Gibbons LE, Sanders RE, Zaman AF, Teylan MA, Kukull WA, Barnes LL, Bennett DA, Lacroix AZ, Larson EB, Cuccaro M, Mercado S, Dumitrescu L, Hohman TJ, Crane PK. Cognitive domain harmonization and cocalibration in studies of older adults. Neuropsychology. 2022 Aug 4;. doi: 10.1037/neu0000835. [Epub ahead of print] PubMed PMID: 35925737; NIHMSID:NIHMS1846521.

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Kim M, Wu R, Yao X, Saykin AJ, Moore JH, Shen L. Identifying genetic markers enriched by brain imaging endophenotypes in Alzheimer's disease. BMC Med Genomics. 2022 Aug 1;15(Suppl 2):168. doi: 10.1186/s12920-022-01323-8. PubMed PMID: 35915443; PubMed Central PMCID: PMC9344647.

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Root JC, Zhou X, Ahn J, Small BJ, Zhai W, Bethea T, Carroll JE, Cohen HJ, Dilawari A, Extermann M, Graham D, Isaacs C, Jacobsen PB, Jim H, McDonald BC, Nakamura ZM, Patel SK, Rentscher K, Saykin AJ, Van Dyk K, Mandelblatt JS, Ahles TA. Association of markers of tumor aggressivity and cognition in women with breast cancer before adjuvant treatment: The Thinking and Living with Cancer Study. Breast Cancer Res Treat. 2022 Jul;194(2):413-422. doi: 10.1007/s10549-022-06623-2. Epub 2022 May 19. PubMed PMID: 35587324; PubMed Central PMCID: PMC9392482.

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Kim JP, Kim BH, Bice PJ, Seo SW, Bennett DA, Saykin AJ, Nho K. Integrative Co-methylation Network Analysis Identifies Novel DNA Methylation Signatures and Their Target Genes in Alzheimer's Disease. Biol Psychiatry. 2022 Jun 24;. doi: 10.1016/j.biopsych.2022.06.020. [Epub ahead of print] PubMed PMID: 36150909; PubMed Central PMCID: PMC9789210.

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Pyun JM, Park YH, Hodges A, Jang JW, Bice PJ, Kim S, Saykin AJ, Nho K. Immunity gene IFITM3 variant: Relation to cognition and Alzheimer's disease pathology. Alzheimers Dement (Amst). 2022;14(1):e12317. doi: 10.1002/dad2.12317. eCollection 2022. PubMed PMID: 35769874; PubMed Central PMCID: PMC9212215.

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Stage E, Risacher SL, Lane KA, Gao S, Nho K, Saykin AJ, Apostolova LG. Association of the top 20 Alzheimer's disease risk genes with [¹⁸F]flortaucipir PET. Alzheimers Dement (Amst). 2022;14(1):e12308. doi: 10.1002/dad2.12308. eCollection 2022. PubMed PMID: 35592828; PubMed Central PMCID: PMC9092485.

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Hwang G, Abdulkadir A, Erus G, Habes M, Pomponio R, Shou H, Doshi J, Mamourian E, Rashid T, Bilgel M, Fan Y, Sotiras A, Srinivasan D, Morris JC, Albert MS, Bryan NR, Resnick SM, Nasrallah IM, Davatzikos C, Wolk DA. Disentangling Alzheimer's disease neurodegeneration from typical brain ageing using machine learning. Brain Commun. 2022;4(3):fcac117. doi: 10.1093/braincomms/fcac117. eCollection 2022. PubMed PMID: 35611306; PubMed Central PMCID: PMC9123890.

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Wen J, Fu CHY, Tosun D, Veturi Y, Yang Z, Abdulkadir A, Mamourian E, Srinivasan D, Skampardoni I, Singh A, Nawani H, Bao J, Erus G, Shou H, Habes M, Doshi J, Varol E, Mackin RS, Sotiras A, Fan Y, Saykin AJ, Sheline YI, Shen L, Ritchie MD, Wolk DA, Albert M, Resnick SM, Davatzikos C. Characterizing Heterogeneity in Neuroimaging, Cognition, Clinical Symptoms, and Genetics Among Patients With Late-Life Depression. JAMA Psychiatry. 2022 May 1;79(5):464-474. doi: 10.1001/jamapsychiatry.2022.0020. PubMed PMID: 35262657; PubMed Central PMCID: PMC8908227.

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Veitch DP, Weiner MW, Aisen PS, Beckett LA, DeCarli C, Green RC, Harvey D, Jack CR Jr, Jagust W, Landau SM, Morris JC, Okonkwo O, Perrin RJ, Petersen RC, Rivera-Mindt M, Saykin AJ, Shaw LM, Toga AW, Tosun D, Trojanowski JQ. Using the Alzheimer's Disease Neuroimaging Initiative to improve early detection, diagnosis, and treatment of Alzheimer's disease. Alzheimers Dement. 2022 Apr;18(4):824-857. doi: 10.1002/alz.12422. Epub 2021 Sep 28. Review. PubMed PMID: 34581485; PubMed Central PMCID: PMC9158456.

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Zarzar TG, Lee B, Coughlin R, Kim D, Shen L, Hall MA. Sex Differences in the Metabolome of Alzheimer's Disease Progression. Front Radiol. 2022;2. doi: 10.3389/fradi.2022.782864. Epub 2022 Mar 14. PubMed PMID: 35445209; PubMed Central PMCID: PMC9014653.

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Jo T, Nho K, Bice P, Saykin AJ. Deep learning-based identification of genetic variants: application to Alzheimer's disease classification. Brief Bioinform. 2022 Mar 10;23(2). doi: 10.1093/bib/bbac022. PubMed PMID: 35183061; PubMed Central PMCID: PMC8921609.

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Wang R, Chaudhari P, Davatzikos C. Embracing the disharmony in medical imaging: A Simple and effective framework for domain adaptation. Med Image Anal. 2022 Feb;76:102309. doi: 10.1016/j.media.2021.102309. Epub 2021 Nov 26. PubMed PMID: 34871931; PubMed Central PMCID: PMC8792340.

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Kim M, Min EJ, Liu K, Yan J, Saykin AJ, Moore JH, Long Q, Shen L. Multi-task learning based structured sparse canonical correlation analysis for brain imaging genetics. Med Image Anal. 2022 Feb;76:102297. doi: 10.1016/j.media.2021.102297. Epub 2021 Nov 13. PubMed PMID: 34871929; PubMed Central PMCID: PMC8792314.

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Lee B, Yao X, Shen L. Genome-Wide association study of quantitative biomarkers identifies a novel locus for alzheimer's disease at 12p12.1. BMC Genomics. 2022 Jan 28;23(1):85. doi: 10.1186/s12864-021-08269-8. PubMed PMID: 35086473; PubMed Central PMCID: PMC8796646.

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Kim JP, Kim BH, Bice PJ, Seo SW, Bennett DA, Saykin AJ, Nho K. Correction to: BMI1 is associated with CSF amyloid-β and rates of cognitive decline in Alzheimer's disease. Alzheimers Res Ther. 2022 Jan 20;14(1):13. doi: 10.1186/s13195-022-00960-6. PubMed PMID: 35057845; PubMed Central PMCID: PMC8780731.

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Wierenga LM, Doucet GE, Dima D, Agartz I, Aghajani M, Akudjedu TN, Albajes-Eizagirre A, Alnaes D, Alpert KI, Andreassen OA, Anticevic A, Asherson P, Banaschewski T, Bargallo N, Baumeister S, Baur-Streubel R, Bertolino A, Bonvino A, Boomsma DI, Borgwardt S, Bourque J, den Braber A, Brandeis D, Breier A, Brodaty H, Brouwer RM, Buitelaar JK, Busatto GF, Calhoun VD, Canales-Rodríguez EJ, Cannon DM, Caseras X, Castellanos FX, Chaim-Avancini TM, Ching CR, Clark VP, Conrod PJ, Conzelmann A, Crivello F, Davey CG, Dickie EW, Ehrlich S, Van't Ent D, Fisher SE, Fouche JP, Franke B, Fuentes-Claramonte P, de Geus EJ, Di Giorgio A, Glahn DC, Gotlib IH, Grabe HJ, Gruber O, Gruner P, Gur RE, Gur RC, Gurholt TP, de Haan L, Haatveit B, Harrison BJ, Hartman CA, Hatton SN, Heslenfeld DJ, van den Heuvel OA, Hickie IB, Hoekstra PJ, Hohmann S, Holmes AJ, Hoogman M, Hosten N, Howells FM, Hulshoff Pol HE, Huyser C, Jahanshad N, James AC, Jiang J, Jönsson EG, Joska JA, Kalnin AJ, Klein M, Koenders L, Kolskår KK, Krämer B, Kuntsi J, Lagopoulos J, Lazaro L, Lebedeva IS, Lee PH, Lochner C, Machielsen MW, Maingault S, Martin NG, Martínez-Zalacaín I, Mataix-Cols D, Mazoyer B, McDonald BC, McDonald C, McIntosh AM, McMahon KL, McPhilemy G, van der Meer D, Menchón JM, Naaijen J, Nyberg L, Oosterlaan J, Paloyelis Y, Pauli P, Pergola G, Pomarol-Clotet E, Portella MJ, Radua J, Reif A, Richard G, Roffman JL, Rosa PG, Sacchet MD, Sachdev PS, Salvador R, Sarró S, Satterthwaite TD, Saykin AJ, Serpa MH, Sim K, Simmons A, Smoller JW, Sommer IE, Soriano-Mas C, Stein DJ, Strike LT, Szeszko PR, Temmingh HS, Thomopoulos SI, Tomyshev AS, Trollor JN, Uhlmann A, Veer IM, Veltman DJ, Voineskos A, Völzke H, Walter H, Wang L, Wang Y, Weber B, Wen W, West JD, Westlye LT, Whalley HC, Williams SC, Wittfeld K, Wolf DH, Wright MJ, Yoncheva YN, Zanetti MV, Ziegler GC, de Zubicaray GI, Thompson PM, Crone EA, Frangou S, Tamnes CK. Greater male than female variability in regional brain structure across the lifespan. Hum Brain Mapp. 2022 Jan;43(1):470-499. doi: 10.1002/hbm.25204. Epub 2020 Oct 12. PubMed PMID: 33044802; PubMed Central PMCID: PMC8675415.

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Dima D, Modabbernia A, Papachristou E, Doucet GE, Agartz I, Aghajani M, Akudjedu TN, Albajes-Eizagirre A, Alnaes D, Alpert KI, Andersson M, Andreasen NC, Andreassen OA, Asherson P, Banaschewski T, Bargallo N, Baumeister S, Baur-Streubel R, Bertolino A, Bonvino A, Boomsma DI, Borgwardt S, Bourque J, Brandeis D, Breier A, Brodaty H, Brouwer RM, Buitelaar JK, Busatto GF, Buckner RL, Calhoun V, Canales-Rodríguez EJ, Cannon DM, Caseras X, Castellanos FX, Cervenka S, Chaim-Avancini TM, Ching CRK, Chubar V, Clark VP, Conrod P, Conzelmann A, Crespo-Facorro B, Crivello F, Crone EA, Dannlowski U, Dale AM, Davey C, de Geus EJC, de Haan L, de Zubicaray GI, den Braber A, Dickie EW, Di Giorgio A, Doan NT, Dørum ES, Ehrlich S, Erk S, Espeseth T, Fatouros-Bergman H, Fisher SE, Fouche JP, Franke B, Frodl T, Fuentes-Claramonte P, Glahn DC, Gotlib IH, Grabe HJ, Grimm O, Groenewold NA, Grotegerd D, Gruber O, Gruner P, Gur RE, Gur RC, Hahn T, Harrison BJ, Hartman CA, Hatton SN, Heinz A, Heslenfeld DJ, Hibar DP, Hickie IB, Ho BC, Hoekstra PJ, Hohmann S, Holmes AJ, Hoogman M, Hosten N, Howells FM, Hulshoff Pol HE, Huyser C, Jahanshad N, James A, Jernigan TL, Jiang J, Jönsson EG, Joska JA, Kahn R, Kalnin A, Kanai R, Klein M, Klyushnik TP, Koenders L, Koops S, Krämer B, Kuntsi J, Lagopoulos J, Lázaro L, Lebedeva I, Lee WH, Lesch KP, Lochner C, Machielsen MWJ, Maingault S, Martin NG, Martínez-Zalacaín I, Mataix-Cols D, Mazoyer B, McDonald C, McDonald BC, McIntosh AM, McMahon KL, McPhilemy G, Meinert S, Menchón JM, Medland SE, Meyer-Lindenberg A, Naaijen J, Najt P, Nakao T, Nordvik JE, Nyberg L, Oosterlaan J, de la Foz VO, Paloyelis Y, Pauli P, Pergola G, Pomarol-Clotet E, Portella MJ, Potkin SG, Radua J, Reif A, Rinker DA, Roffman JL, Rosa PGP, Sacchet MD, Sachdev PS, Salvador R, Sánchez-Juan P, Sarró S, Satterthwaite TD, Saykin AJ, Serpa MH, Schmaal L, Schnell K, Schumann G, Sim K, Smoller JW, Sommer I, Soriano-Mas C, Stein DJ, Strike LT, Swagerman SC, Tamnes CK, Temmingh HS, Thomopoulos SI, Tomyshev AS, Tordesillas-Gutiérrez D, Trollor JN, Turner JA, Uhlmann A, van den Heuvel OA, van den Meer D, van der Wee NJA, van Haren NEM, Van't Ent D, van Erp TGM, Veer IM, Veltman DJ, Voineskos A, Völzke H, Walter H, Walton E, Wang L, Wang Y, Wassink TH, Weber B, Wen W, West JD, Westlye LT, Whalley H, Wierenga LM, Williams SCR, Wittfeld K, Wolf DH, Worker A, Wright MJ, Yang K, Yoncheva Y, Zanetti MV, Ziegler GC, Thompson PM, Frangou S. Subcortical volumes across the lifespan: Data from 18,605 healthy individuals aged 3-90 years. Hum Brain Mapp. 2022 Jan;43(1):452-469. doi: 10.1002/hbm.25320. Epub 2021 Feb 11. PubMed PMID: 33570244; PubMed Central PMCID: PMC8675429.

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Frangou S, Modabbernia A, Williams SCR, Papachristou E, Doucet GE, Agartz I, Aghajani M, Akudjedu TN, Albajes-Eizagirre A, Alnaes D, Alpert KI, Andersson M, Andreasen NC, Andreassen OA, Asherson P, Banaschewski T, Bargallo N, Baumeister S, Baur-Streubel R, Bertolino A, Bonvino A, Boomsma DI, Borgwardt S, Bourque J, Brandeis D, Breier A, Brodaty H, Brouwer RM, Buitelaar JK, Busatto GF, Buckner RL, Calhoun V, Canales-Rodríguez EJ, Cannon DM, Caseras X, Castellanos FX, Cervenka S, Chaim-Avancini TM, Ching CRK, Chubar V, Clark VP, Conrod P, Conzelmann A, Crespo-Facorro B, Crivello F, Crone EA, Dale AM, Dannlowski U, Davey C, de Geus EJC, de Haan L, de Zubicaray GI, den Braber A, Dickie EW, Di Giorgio A, Doan NT, Dørum ES, Ehrlich S, Erk S, Espeseth T, Fatouros-Bergman H, Fisher SE, Fouche JP, Franke B, Frodl T, Fuentes-Claramonte P, Glahn DC, Gotlib IH, Grabe HJ, Grimm O, Groenewold NA, Grotegerd D, Gruber O, Gruner P, Gur RE, Gur RC, Hahn T, Harrison BJ, Hartman CA, Hatton SN, Heinz A, Heslenfeld DJ, Hibar DP, Hickie IB, Ho BC, Hoekstra PJ, Hohmann S, Holmes AJ, Hoogman M, Hosten N, Howells FM, Hulshoff Pol HE, Huyser C, Jahanshad N, James A, Jernigan TL, Jiang J, Jönsson EG, Joska JA, Kahn R, Kalnin A, Kanai R, Klein M, Klyushnik TP, Koenders L, Koops S, Krämer B, Kuntsi J, Lagopoulos J, Lázaro L, Lebedeva I, Lee WH, Lesch KP, Lochner C, Machielsen MWJ, Maingault S, Martin NG, Martínez-Zalacaín I, Mataix-Cols D, Mazoyer B, McDonald C, McDonald BC, McIntosh AM, McMahon KL, McPhilemy G, Meinert S, Menchón JM, Medland SE, Meyer-Lindenberg A, Naaijen J, Najt P, Nakao T, Nordvik JE, Nyberg L, Oosterlaan J, de la Foz VO, Paloyelis Y, Pauli P, Pergola G, Pomarol-Clotet E, Portella MJ, Potkin SG, Radua J, Reif A, Rinker DA, Roffman JL, Rosa PGP, Sacchet MD, Sachdev PS, Salvador R, Sánchez-Juan P, Sarró S, Satterthwaite TD, Saykin AJ, Serpa MH, Schmaal L, Schnell K, Schumann G, Sim K, Smoller JW, Sommer I, Soriano-Mas C, Stein DJ, Strike LT, Swagerman SC, Tamnes CK, Temmingh HS, Thomopoulos SI, Tomyshev AS, Tordesillas-Gutiérrez D, Trollor JN, Turner JA, Uhlmann A, van den Heuvel OA, van den Meer D, van der Wee NJA, van Haren NEM, van 't Ent D, van Erp TGM, Veer IM, Veltman DJ, Voineskos A, Völzke H, Walter H, Walton E, Wang L, Wang Y, Wassink TH, Weber B, Wen W, West JD, Westlye LT, Whalley H, Wierenga LM, Wittfeld K, Wolf DH, Worker A, Wright MJ, Yang K, Yoncheva Y, Zanetti MV, Ziegler GC, Thompson PM, Dima D. Cortical thickness across the lifespan: Data from 17,075 healthy individuals aged 3-90 years. Hum Brain Mapp. 2022 Jan;43(1):431-451. doi: 10.1002/hbm.25364. Epub 2021 Feb 17. PubMed PMID: 33595143; PubMed Central PMCID: PMC8675431.

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Wen J, Varol E, Sotiras A, Yang Z, Chand GB, Erus G, Shou H, Abdulkadir A, Hwang G, Dwyer DB, Pigoni A, Dazzan P, Kahn RS, Schnack HG, Zanetti MV, Meisenzahl E, Busatto GF, Crespo-Facorro B, Rafael RG, Pantelis C, Wood SJ, Zhuo C, Shinohara RT, Fan Y, Gur RC, Gur RE, Satterthwaite TD, Koutsouleris N, Wolf DH, Davatzikos C. Multi-scale semi-supervised clustering of brain images: Deriving disease subtypes. Med Image Anal. 2022 Jan;75:102304. doi: 10.1016/j.media.2021.102304. Epub 2021 Nov 11. PubMed PMID: 34818611; PubMed Central PMCID: PMC8678373.

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Bao J, Wen Z, Kim M, Saykin AJ, Thompson PM, Zhao Y, Shen L. Identifying imaging genetic associations via regional morphometricity estimation. Pac Symp Biocomput. 2022;27:97-108. PubMed PMID: 34890140; PubMed Central PMCID: PMC8730533.

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Bao J, Wen Z, Kim M, Zhao X, Lee BN, Jung SH, Davatzikos C, Saykin AJ, Thompson PM, Kim D, Zhao Y, Shen L. Identifying highly heritable brain amyloid phenotypes through mining Alzheimer's imaging and sequencing biobank data. Pac Symp Biocomput. 2022;27:109-120. PubMed PMID: 34890141; PubMed Central PMCID: PMC8730532.

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Wisse LE, Xie L, Das SR, de Flores R, Hansson O, Habes M, Doshi J, Davatzikos C, Yushkevich PA, Wolk DA. Tau pathology mediates age effects on medial temporal lobe structure. Neurobiol Aging. 2022 Jan;109:135-144. doi: 10.1016/j.neurobiolaging.2021.09.017. Epub 2021 Sep 24. PubMed PMID: 34740075; PubMed Central PMCID: PMC8800343.

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Nir TM, Zhu AH, Gari IB, Dixon D, Islam T, Villalon-Reina JE, Medland SE, Thompson PM, Jahanshad N. Effects of ApoE4 and ApoE2 genotypes on subcortical magnetic susceptibility and microstructure in 27,535 participants from the UK Biobank. Pac Symp Biocomput. 2022;27:121-132. PubMed PMID: 34890142; PubMed Central PMCID: PMC9009383.

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Yang Z, Nasrallah IM, Shou H, Wen J, Doshi J, Habes M, Erus G, Abdulkadir A, Resnick SM, Albert MS, Maruff P, Fripp J, Morris JC, Wolk DA, Davatzikos C. A deep learning framework identifies dimensional representations of Alzheimer's Disease from brain structure. Nat Commun. 2021 Dec 3;12(1):7065. doi: 10.1038/s41467-021-26703-z. PubMed PMID: 34862382; PubMed Central PMCID: PMC8642554.

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Kim M, Kim J, Qu J, Huang H, Long Q, Sohn KA, Kim D, Shen L. Interpretable temporal graph neural network for prognostic prediction of Alzheimer's disease using longitudinal neuroimaging data. Proceedings (IEEE Int Conf Bioinformatics Biomed). 2021 Dec;2021:1381-1384. doi: 10.1109/bibm52615.2021.9669504. PubMed PMID: 35299717; PubMed Central PMCID: PMC8922159.

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Xie L, He B, Varathan P, Nho K, Risacher SL, Saykin AJ, Salama P, Yan J. Integrative-omics for discovery of network-level disease biomarkers: a case study in Alzheimer's disease. Brief Bioinform. 2021 Nov 5;22(6). doi: 10.1093/bib/bbab121. PubMed PMID: 33971669; PubMed Central PMCID: PMC8574309.

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Park YH, Pyun JM, Hodges A, Jang JW, Bice PJ, Kim S, Saykin AJ, Nho K. Dysregulated expression levels of APH1B in peripheral blood are associated with brain atrophy and amyloid-β deposition in Alzheimer's disease. Alzheimers Res Ther. 2021 Nov 3;13(1):183. doi: 10.1186/s13195-021-00919-z. PubMed PMID: 34732252; PubMed Central PMCID: PMC8567578.

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Lu L, Elbeleidy S, Baker L, Wang H, Shen L, Heng H. Improved Prediction of Cognitive Outcomes via Globally Aligned Imaging Biomarker Enrichments Over Progressions. IEEE Trans Biomed Eng. 2021 Nov;68(11):3336-3346. doi: 10.1109/TBME.2021.3070875. Epub 2021 Oct 19. PubMed PMID: 33819146; PubMed Central PMCID: PMC8580961.

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Kim JP, Kim BH, Bice PJ, Seo SW, Bennett DA, Saykin AJ, Nho K. BMI1 is associated with CS8F amyloid-β and rates of cognitive decline in Alzheimer's disease. Alzheimers Res Ther. 2021 Oct 5;13(1):164. doi: 10.1186/s13195-021-00906-4. PubMed PMID: 34610832; PubMed Central PMCID: PMC8493672.

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Songdechakraiwut T, Shen L, Chung M. Topological Learning and Its Application to Multimodal Brain Network Integration. Med Image Comput Comput Assist Interv. 2021 Sep-Oct;12902:166-176. doi: 10.1007/978-3-030-87196-3_16. Epub 2021 Sep 21. PubMed PMID: 35098263; PubMed Central PMCID: PMC8797159.

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Zhao Y, Zhao X, Kim M, Bao J, Shen L. A Novel Bayesian Semi-parametric Model for Learning Heritable Imaging Traits. Med Image Comput Comput Assist Interv. 2021 Sep-Oct;12905:678-687. doi: 10.1007/978-3-030-87240-3_65. Epub 2021 Sep 21. PubMed PMID: 35299630; PubMed Central PMCID: PMC8922551.

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Zhang Y, Zhan L, Wu S, Thompson P, Huang H. Disentangled and Proportional Representation Learning for Multi-View Brain Connectomes. Med Image Comput Comput Assist Interv. 2021 Sep-Oct;12907:508-518. doi: 10.1007/978-3-030-87234-2_48. Epub 2021 Sep 21. PubMed PMID: 35449787; PubMed Central PMCID: PMC9020272.

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Pyun JM, Park YH, Lee KJ, Kim S, Saykin AJ, Nho K. Predictability of polygenic risk score for progression to dementia and its interaction with APOE ε4 in mild cognitive impairment. Transl Neurodegener. 2021 Aug 31;10(1):32. doi: 10.1186/s40035-021-00259-w. PubMed PMID: 34465370; PubMed Central PMCID: PMC8406896.

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Cong S, Yao X, Xie L, Yan J, Shen L. Genetic Influence underlying Brain Connectivity Phenotype: A Study on Two Age-Specific Cohorts. [preprint]. 2021 August. Available from: https://doi.org/10.1101/2021.08.23.457353. doi: https://doi.org/10.1101/2021.08.23.457353.

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Nayor M, Shen L, Hunninghake GM, Kochunov P, Barr RG, Bluemke DA, Broeckel U, Caravan P, Cheng S, de Vries PS, Hoffmann U, Kolossváry M, Li H, Luo J, McNally EM, Thanassoulis G, Arnett DK, Vasan RS. Progress and Research Priorities in Imaging Genomics for Heart and Lung Disease: Summary of an NHLBI Workshop. Circ Cardiovasc Imaging. 2021 Aug;14(8):e012943. doi: 10.1161/CIRCIMAGING.121.012943. Epub 2021 Aug 13. PubMed PMID: 34387095; PubMed Central PMCID: PMC8486340.

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Wang M, Shao W, Hao X, Shen L, Zhang D. Identify Consistent Cross-Modality Imaging Genetic Patterns via Discriminant Sparse Canonical Correlation Analysis. IEEE/ACM Trans Comput Biol Bioinform. 2021 Jul-Aug;18(4):1549-1561. doi: 10.1109/TCBB.2019.2944825. Epub 2021 Aug 6. PubMed PMID: 31581090.

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Svaldi DO, Goñi J, Abbas K, Amico E, Clark DG, Muralidharan C, Dzemidzic M, West JD, Risacher SL, Saykin AJ, Apostolova LG. Optimizing differential identifiability improves connectome predictive modeling of cognitive deficits from functional connectivity in Alzheimer's disease. Hum Brain Mapp. 2021 Aug 1;42(11):3500-3516. doi: 10.1002/hbm.25448. Epub 2021 May 5. PubMed PMID: 33949732; PubMed Central PMCID: PMC8249900.

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Butcher TJ, Dzemidzic M, Harezlak J, Hulvershorn LA, Oberlin BG. Brain responses during delay discounting in youth at high-risk for substance use disorders. Neuroimage Clin. 2021;32:102772. doi: 10.1016/j.nicl.2021.102772. Epub 2021 Jul 24. PubMed PMID: 34479170; PubMed Central PMCID: PMC8414537.

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Keret O, Staffaroni AM, Ringman JM, Cobigo Y, Goh SM, Wolf A, Allen IE, Salloway S, Chhatwal J, Brickman AM, Reyes-Dumeyer D, Bateman RJ, Benzinger TLS, Morris JC, Ances BM, Joseph-Mathurin N, Perrin RJ, Gordon BA, Levin J, Vöglein J, Jucker M, la Fougère C, Martins RN, Sohrabi HR, Taddei K, Villemagne VL, Schofield PR, Brooks WS, Fulham M, Masters CL, Ghetti B, Saykin AJ, Jack CR, Graff-Radford NR, Weiner M, Cash DM, Allegri RF, Chrem P, Yi S, Miller BL, Rabinovici GD, Rosen HJ. Pattern and degree of individual brain atrophy predicts dementia onset in dominantly inherited Alzheimer's disease. Alzheimers Dement (Amst). 2021;13(1):e12197. doi: 10.1002/dad2.12197. eCollection 2021. PubMed PMID: 34258377; PubMed Central PMCID: PMC8256623.

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Kim M, Bao J, Liu K, Park BY, Park H, Baik JY, Shen L. A structural enriched functional network: An application to predict brain cognitive performance. Med Image Anal. 2021 Jul;71:102026. doi: 10.1016/j.media.2021.102026. Epub 2021 Mar 4. PubMed PMID: 33848962; PubMed Central PMCID: PMC8184595.

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Cieslak M, Cook PA, He X, Yeh FC, Dhollander T, Adebimpe A, Aguirre GK, Bassett DS, Betzel RF, Bourque J, Cabral LM, Davatzikos C, Detre JA, Earl E, Elliott MA, Fadnavis S, Fair DA, Foran W, Fotiadis P, Garyfallidis E, Giesbrecht B, Gur RC, Gur RE, Kelz MB, Keshavan A, Larsen BS, Luna B, Mackey AP, Milham MP, Oathes DJ, Perrone A, Pines AR, Roalf DR, Richie-Halford A, Rokem A, Sydnor VJ, Tapera TM, Tooley UA, Vettel JM, Yeatman JD, Grafton ST, Satterthwaite TD. QSIPrep: an integrative platform for preprocessing and reconstructing diffusion MRI data. Nat Methods. 2021 Jul;18(7):775-778. doi: 10.1038/s41592-021-01185-5. Epub 2021 Jun 21. PubMed PMID: 34155395; PubMed Central PMCID: PMC8596781.