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Frey LJ, Hughes Halbert C, Blasy CD. Supporting the Capture of Social Needs Through Natural Language Processing. J Am Board Fam Med. 2023 May 8;36(3):513-514. doi: 10.3122/jabfm.2022.220415R0. PubMed PMID: 37290826; PubMed Central PMCID: PMC10484332.
Obeid JS, Dahne J, Christensen S, Howard S, Crawford T, Frey LJ, Stecker T, Bunnell BE. Identifying and Predicting Intentional Self-Harm in Electronic Health Record Clinical Notes: Deep Learning Approach. JMIR Med Inform. 2020 Jul 30;8(7):e17784. doi: 10.2196/17784. PubMed PMID: 32729840; PubMed Central PMCID: PMC7426805.
Frey LJ, Talbert DA. Artificial Intelligence Pipeline to Bridge the Gap between Bench Researchers and Clinical Researchers in Precision Medicine. Med One. 2020 Jan 10;5. doi: 10.20900/mo20200001. PubMed PMID: 33511289; PubMed Central PMCID: PMC7839064.
Obeid JS, Weeda ER, Matuskowitz AJ, Gagnon K, Crawford T, Carr CM, Frey LJ. Automated detection of altered mental status in emergency department clinical notes: a deep learning approach. BMC Med Inform Decis Mak. 2019 Aug 19;19(1):164. doi: 10.1186/s12911-019-0894-9. PubMed PMID: 31426779; PubMed Central PMCID: PMC6701023.
Frey LJ. Artificial Intelligence and Integrated Genotype⁻Phenotype Identification. Genes (Basel). 2018 Dec 28;10(1). doi: 10.3390/genes10010018. PubMed PMID: 30597900; PubMed Central PMCID: PMC6356893.
Frey LJ. Data integration strategies for predictive analytics in precision medicine. Per Med. 2018 Nov;15(6):543-551. doi: 10.2217/pme-2018-0035. Epub 2018 Nov 2. Review. PubMed PMID: 30387695; PubMed Central PMCID: PMC6277956.
Liu G, Zhang J, Frey L, Gang X, Wu K, Liu Q, Lilly M, Wu J. Prostate-specific IL-6 transgene autonomously induce prostate neoplasm through amplifying inflammation in the prostate and peri-prostatic adipose tissue. J Hematol Oncol. 2017 Jan 11;10(1):14. doi: 10.1186/s13045-016-0386-7. PubMed PMID: 28077171; PubMed Central PMCID: PMC5225646.
Frey LJ, Bernstam EV, Denny JC. Precision medicine informatics. J Am Med Inform Assoc. 2016 Jul;23(4):668-70. doi: 10.1093/jamia/ocw053. Epub 2016 Jun 6. PubMed PMID: 27274018; PubMed Central PMCID: PMC4926751.
Luo G, Frey LJ. Efficient Execution Methods of Pivoting for Bulk Extraction of Entity-Attribute-Value-Modeled Data. IEEE J Biomed Health Inform. 2016 Mar;20(2):644-54. doi: 10.1109/JBHI.2015.2392553. Epub 2015 Jan 15. PubMed PMID: 25608318; PubMed Central PMCID: PMC5656246.
Frey LJ, Sward KA, Newth CJ, Khemani RG, Cryer ME, Thelen JL, Enriquez R, Shaoyu S, Pollack MM, Harrison RE, Meert KL, Berg RA, Wessel DL, Shanley TP, Dalton H, Carcillo J, Jenkins TL, Dean JM. Virtualization of open-source secure web services to support data exchange in a pediatric critical care research network. J Am Med Inform Assoc. 2015 Nov;22(6):1271-6. doi: 10.1093/jamia/ocv009. Epub 2015 Mar 21. PubMed PMID: 25796596; PubMed Central PMCID: PMC4639713.
Frey LJ. Informatics tools to advance the biology of glycosaminoglycans and proteoglycans. Methods Mol Biol. 2015;1229:271-87. doi: 10.1007/978-1-4939-1714-3_23. PubMed PMID: 25325960.
Frey LJ, Lenert L, Lopez-Campos G. EHR Big Data Deep Phenotyping. Contribution of the IMIA Genomic Medicine Working Group. Yearb Med Inform. 2014 Aug 15;9(1):206-11. doi: 10.15265/IY-2014-0006. PubMed PMID: 25123744; PubMed Central PMCID: PMC4287080.
Ohno-Machado L, Agha Z, Bell DS, Dahm L, Day ME, Doctor JN, Gabriel D, Kahlon MK, Kim KK, Hogarth M, Matheny ME, Meeker D, Nebeker JR. pSCANNER: patient-centered Scalable National Network for Effectiveness Research. J Am Med Inform Assoc. 2014 Jul-Aug;21(4):621-6. doi: 10.1136/amiajnl-2014-002751. Epub 2014 Apr 29. PubMed PMID: 24780722; PubMed Central PMCID: PMC4078293.
Guo JW, Sward K, Beck S, Wong B, Staggers N, Frey L. Using a content analysis to identify study eligibility criteria concepts in cancer nursing research. Comput Inform Nurs. 2014 Jul;32(7):333-42. doi: 10.1097/CIN.0000000000000061. Review. PubMed PMID: 24814997.
Thibault JC, Frey L. Biomedical Terminology Mapper for UML projects. AMIA Jt Summits Transl Sci Proc. 2013;2013:257-61. eCollection 2013. PubMed PMID: 24303278; PubMed Central PMCID: PMC3845744.
Piccolo SR, Frey LJ. Clinical and molecular models of glioblastoma multiforme survival. Int J Data Min Bioinform. 2013;7(3):245-65. doi: 10.1504/ijdmb.2013.053310. PubMed PMID: 23819258; PubMed Central PMCID: PMC4018825.
Frey LJ, Piccolo SR, Edgerton ME. Multiplicity: an organizing principle for cancers and somatic mutations. BMC Med Genomics. 2011 Jun 29;4:52. doi: 10.1186/1755-8794-4-52. PubMed PMID: 21714919; PubMed Central PMCID: PMC3150236.
Cryer ME, Frey L. Agent-based modeling supporting the migration of registry systems to grid based architectures. Summit Transl Bioinform. 2009 Mar 1;2009:26-30. PubMed PMID: 21347166; PubMed Central PMCID: PMC3041565.
Kunz I, Lin MC, Frey L. Metadata mapping and reuse in caBIG. BMC Bioinformatics. 2009 Feb 5;10 Suppl 2(Suppl 2):S4. doi: 10.1186/1471-2105-10-S2-S4. PubMed PMID: 19208192; PubMed Central PMCID: PMC2646244.
Piccolo SR, Camp N, Frey LJ. Polygenic model for predicting breast cancer risk via genome-wide polymorphisms. AMIA Annu Symp Proc. 2008 Nov 6;:1094. PubMed PMID: 18999159.
Piccolo SR, Frey LJ. Somatic mutation signatures of cancer. AMIA Annu Symp Proc. 2008 Nov 6;2008:202-6. PubMed PMID: 18999255; PubMed Central PMCID: PMC2655983.
Edgerton ME, Fisher DH, Tang L, Frey LJ, Chen Z. Data mining for gene networks relevant to poor prognosis in lung cancer via backward-chaining rule induction. Cancer Inform. 2007 Feb 10;3:93-114. PubMed PMID: 19455237; PubMed Central PMCID: PMC2312096.
Frey LJ, Maojo V, Mitchell JA. Bioinformatics linkage of heterogeneous clinical and genomic information in support of personalized medicine. Yearb Med Inform. 2007;:98-105. PubMed PMID: 17700912.
Frey L, Edgerton M, Fisher D, Levy S. Ensemble stump classifiers and gene expression signatures in lung cancer. Stud Health Technol Inform. 2007;129(Pt 2):1255-9. PubMed PMID: 17911916.
Frey L, Edgerton ME, Fisher DH, Tang L, Chen Z. Using prior knowledge and rule induction methods to discover molecular markers of prognosis in lung cancer. AMIA Annu Symp Proc. 2005;2005:256-60. PubMed PMID: 16779041; PubMed Central PMCID: PMC1560786.
Big Data Analytics in Clinical Research. Conference Proceedings of AMIA Joint Summits on Translational Science 2014. .
Clinical Personalized Pragmatic Prediction of Outcomes (Clinical3PO). Conference Proceedings of AMIA Joint Summits on Translational Science 2014. .
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