My Bibliography

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Bertrand BP, Shinde D, Thomas VC, Whiteley M, Ibberson CB, Kielian T. Metabolic diversity of human macrophages: potential influence on Staphylococcus aureus intracellular survival. Infect Immun. 2024 Feb 13;92(2):e0047423. doi: 10.1128/iai.00474-23. Epub 2024 Jan 5. PubMed PMID: 38179975; PubMed Central PMCID: PMC10863412.

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Panda S, Jayasinghe YP, Shinde DD, Bueno E, Stastny A, Bertrand BP, Chaudhari SS, Kielian T, Cava F, Ronning DR, Thomas VC. Staphylococcus aureus counters organic acid anion-mediated inhibition of peptidoglycan cross-linking through robust alanine racemase activity. bioRxiv. 2024 Jan 16;. doi: 10.1101/2024.01.15.575639. PubMed PMID: 38293037; PubMed Central PMCID: PMC10827132.

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White MD, Angara RK, Dias LT, Shinde DD, Thomas VC, Augusto L. Host autophagy is exploited by the intracellular parasite Toxoplasma gondii to enhance amino acids levels. bioRxiv. 2023 Dec 8;. doi: 10.1101/2023.12.08.570852. PubMed PMID: 38106117; PubMed Central PMCID: PMC10723413.

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Singh RM, Chaudhari SS, Panda S, Hutfless EH, Heim CE, Shinde D, Alqarzaee AA, Sladek M, Kumar V, Zimmerman MC, Fey PD, Kielian T, Thomas VC. A critical role for staphylococcal nitric oxide synthase in controlling flavohemoglobin toxicity. Redox Biol. 2023 Nov;67:102935. doi: 10.1016/j.redox.2023.102935. Epub 2023 Oct 16. PubMed PMID: 37864875; PubMed Central PMCID: PMC10594633.

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Zeden MS, Gallagher LA, Bueno E, Nolan AC, Ahn J, Shinde D, Razvi F, Sladek M, Burke Ó, O'Neill E, Fey PD, Cava F, Thomas VC, O'Gara JP. Metabolic reprogramming and altered cell envelope characteristics in a pentose phosphate pathway mutant increases MRSA resistance to β-lactam antibiotics. PLoS Pathog. 2023 Jul;19(7):e1011536. doi: 10.1371/journal.ppat.1011536. eCollection 2023 Jul. PubMed PMID: 37486930; PubMed Central PMCID: PMC10399904.

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Zeden MS, Gallagher LA, Bueno E, Nolan AC, Ahn J, Shinde D, Razvi F, Sladek M, Burke Ó, O'Neill E, Fey PD, Cava F, Thomas VC, O'Gara JP. Metabolic reprogramming and flux to cell envelope precursors in a pentose phosphate pathway mutant increases MRSA resistance to β-lactam antibiotics. bioRxiv. 2023 Mar 7;. doi: 10.1101/2023.03.03.530734. PubMed PMID: 36945400; PubMed Central PMCID: PMC10028837.

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Briaud P, Zapf RL, Mayher AD, McReynolds AKG, Frey A, Sudnick EG, Wiemels RE, Keogh RA, Shaw LN, Bose JL, Carroll RK. The Small RNA Teg41 Is a Pleiotropic Regulator of Virulence in Staphylococcus aureus. Infect Immun. 2022 Nov 17;90(11):e0023622. doi: 10.1128/iai.00236-22. Epub 2022 Oct 10. PubMed PMID: 36214557; PubMed Central PMCID: PMC9670889.

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Frodyma DE, Troia TC, Rao C, Svoboda RA, Berg JA, Shinde DD, Thomas VC, Lewis RE, Fisher KW. PGC-1β and ERRα Promote Glutamine Metabolism and Colorectal Cancer Survival via Transcriptional Upregulation of PCK2. Cancers (Basel). 2022 Oct 5;14(19). doi: 10.3390/cancers14194879. PubMed PMID: 36230802; PubMed Central PMCID: PMC9562873.

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Ridder MJ, McReynolds AKG, Dai H, Pritchard MT, Markiewicz MA, Bose JL. Kinetic Characterization of the Immune Response to Methicillin-Resistant Staphylococcus aureus Subcutaneous Skin Infection. Infect Immun. 2022 Jul 21;90(7):e0006522. doi: 10.1128/iai.00065-22. Epub 2022 Jun 1. PubMed PMID: 35647662; PubMed Central PMCID: PMC9302141.

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Bulock LL, Ahn J, Shinde D, Pandey S, Sarmiento C, Thomas VC, Guda C, Bayles KW, Sadykov MR. Interplay of CodY and CcpA in Regulating Central Metabolism and Biofilm Formation in Staphylococcus aureus. J Bacteriol. 2022 Jul 19;204(7):e0061721. doi: 10.1128/jb.00617-21. Epub 2022 Jun 23. PubMed PMID: 35735992; PubMed Central PMCID: PMC9295537.

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Reslane I, Halsey CR, Stastny A, Cabrera BJ, Ahn J, Shinde D, Galac MR, Sladek MF, Razvi F, Lehman MK, Bayles KW, Thomas VC, Handke LD, Fey PD. Catabolic Ornithine Carbamoyltransferase Activity Facilitates Growth of Staphylococcus aureus in Defined Medium Lacking Glucose and Arginine. mBio. 2022 Jun 28;13(3):e0039522. doi: 10.1128/mbio.00395-22. Epub 2022 Apr 27. PubMed PMID: 35475645; PubMed Central PMCID: PMC9239276.

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DeMars ZR, Krute CN, Ridder MJ, Gilchrist AK, Menjivar C, Bose JL. Fatty acids can inhibit Staphylococcus aureus SaeS activity at the membrane independent of alterations in respiration. Mol Microbiol. 2021 Nov;116(5):1378-1391. doi: 10.1111/mmi.14830. Epub 2021 Oct 30. PubMed PMID: 34626146; PubMed Central PMCID: PMC8898382.

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Fenton CA, Tang Q, Olson DG, Maloney MI, Bose JL, Lynd LR, Fenton AW. Inhibition of Pyruvate Kinase From Thermoanaerobacterium saccharolyticum by IMP Is Independent of the Extra-C Domain. Front Microbiol. 2021;12:628308. doi: 10.3389/fmicb.2021.628308. eCollection 2021. PubMed PMID: 33679651; PubMed Central PMCID: PMC7925390.

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Ridder MJ, Markiewicz MA, Bose JL. Bone Marrow-Derived Macrophage Infection Assay. Methods Mol Biol. 2021;2341:133-140. doi: 10.1007/978-1-0716-1550-8_16. PubMed PMID: 34264469.

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Ridder MJ, Daly SM, Hall PR, Bose JL. Quantitative Hemolysis Assays. Methods Mol Biol. 2021;2341:25-30. doi: 10.1007/978-1-0716-1550-8_4. PubMed PMID: 34264457.

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Krute CN, Seawell NA, Bose JL. Measuring Staphylococcal Promoter Activities Using a Codon-Optimized β-Galactosidase Reporter. Methods Mol Biol. 2021;2341:37-44. doi: 10.1007/978-1-0716-1550-8_6. PubMed PMID: 34264459; PubMed Central PMCID: PMC8898383.

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Ridder MJ, Daly SM, Triplett KD, Seawell NA, Hall PR, Bose JL. Staphylococcus aureus Fatty Acid Kinase FakA Modulates Pathogenesis during Skin Infection via Proteases. Infect Immun. 2020 Jul 21;88(8). doi: 10.1128/IAI.00163-20. Print 2020 Jul 21. PubMed PMID: 32513856; PubMed Central PMCID: PMC7375762.

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DeMars Z, Singh VK, Bose JL. Exogenous Fatty Acids Remodel Staphylococcus aureus Lipid Composition through Fatty Acid Kinase. J Bacteriol. 2020 Jun 25;202(14). doi: 10.1128/JB.00128-20. Print 2020 Jun 25. PubMed PMID: 32366591; PubMed Central PMCID: PMC7317038.

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Gries CM, Biddle T, Bose JL, Kielian T, Lo DD. Staphylococcus aureus Fibronectin Binding Protein A Mediates Biofilm Development and Infection. Infect Immun. 2020 Apr 20;88(5). doi: 10.1128/IAI.00859-19. Print 2020 Apr 20. PubMed PMID: 32041788; PubMed Central PMCID: PMC7171244.

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Sadykov MR, Windham IH, Widhelm TJ, Yajjala VK, Watson SM, Endres JL, Bavari AI, Thomas VC, Bose JL, Bayles KW. CidR and CcpA Synergistically Regulate Staphylococcus aureus cidABC Expression. J Bacteriol. 2019 Dec 1;201(23). doi: 10.1128/JB.00371-19. Print 2019 Dec 1. PubMed PMID: 31501288; PubMed Central PMCID: PMC6832070.

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Austin CM, Garabaglu S, Krute CN, Ridder MJ, Seawell NA, Markiewicz MA, Boyd JM, Bose JL. Contribution of YjbIH to Virulence Factor Expression and Host Colonization in Staphylococcus aureus. Infect Immun. 2019 Jun;87(6). doi: 10.1128/IAI.00155-19. Print 2019 Jun. PubMed PMID: 30885928; PubMed Central PMCID: PMC6529663.

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Zapf RL, Wiemels RE, Keogh RA, Holzschu DL, Howell KM, Trzeciak E, Caillet AR, King KA, Selhorst SA, Naldrett MJ, Bose JL, Carroll RK. The Small RNA Teg41 Regulates Expression of the Alpha Phenol-Soluble Modulins and Is Required for Virulence in Staphylococcus aureus. mBio. 2019 Feb 5;10(1). doi: 10.1128/mBio.02484-18. PubMed PMID: 30723124; PubMed Central PMCID: PMC6428751.

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James KL, Mogen AB, Brandwein JN, Orsini SS, Ridder MJ, Markiewicz MA, Bose JL, Rice KC. Interplay of Nitric Oxide Synthase (NOS) and SrrAB in Modulation of Staphylococcus aureus Metabolism and Virulence. Infect Immun. 2019 Feb;87(2). doi: 10.1128/IAI.00570-18. Print 2019 Feb. PubMed PMID: 30420450; PubMed Central PMCID: PMC6346124.

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Krute CN, Ridder MJ, Seawell NA, Bose JL. Inactivation of the exogenous fatty acid utilization pathway leads to increased resistance to unsaturated fatty acids in Staphylococcus aureus. Microbiology (Reading). 2019 Feb;165(2):197-207. doi: 10.1099/mic.0.000757. Epub 2018 Dec 19. PubMed PMID: 30566075; PubMed Central PMCID: PMC6600405.

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DeMars Z, Bose JL. Redirection of Metabolism in Response to Fatty Acid Kinase in Staphylococcus aureus. J Bacteriol. 2018 Oct 1;200(19). doi: 10.1128/JB.00345-18. Print 2018 Oct 1. PubMed PMID: 30012726; PubMed Central PMCID: PMC6148474.

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Krute CN, Rice KC, Bose JL. VfrB Is a Key Activator of the Staphylococcus aureus SaeRS Two-Component System. J Bacteriol. 2017 Mar 1;199(5). doi: 10.1128/JB.00828-16. Print 2017 Mar 1. PubMed PMID: 28031278; PubMed Central PMCID: PMC5309915.

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Krute CN, Krausz KL, Markiewicz MA, Joyner JA, Pokhrel S, Hall PR, Bose JL. Generation of a Stable Plasmid for In Vitro and In Vivo Studies of Staphylococcus Species. Appl Environ Microbiol. 2016 Dec 1;82(23):6859-6869. doi: 10.1128/AEM.02370-16. Epub 2016 Sep 16. PubMed PMID: 27637878; PubMed Central PMCID: PMC5103085.

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Chaudhari SS, Thomas VC, Sadykov MR, Bose JL, Ahn DJ, Zimmerman MC, Bayles KW. The LysR-type transcriptional regulator, CidR, regulates stationary phase cell death in Staphylococcus aureus. Mol Microbiol. 2016 Sep;101(6):942-53. doi: 10.1111/mmi.13433. Epub 2016 Jul 4. PubMed PMID: 27253847; PubMed Central PMCID: PMC5014633.

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Burcham ZM, Hood JA, Pechal JL, Krausz KL, Bose JL, Schmidt CJ, Benbow ME, Jordan HR. Fluorescently labeled bacteria provide insight on post-mortem microbial transmigration. Forensic Sci Int. 2016 Jul;264:63-9. doi: 10.1016/j.forsciint.2016.03.019. Epub 2016 Mar 17. PubMed PMID: 27032615.

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Gries CM, Sadykov MR, Bulock LL, Chaudhari SS, Thomas VC, Bose JL, Bayles KW. Potassium Uptake Modulates Staphylococcus aureus Metabolism. mSphere. 2016 May-Jun;1(3). doi: 10.1128/mSphere.00125-16. eCollection 2016 May-Jun. PubMed PMID: 27340697; PubMed Central PMCID: PMC4911797.

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McCarthy H, Waters EM, Bose JL, Foster S, Bayles KW, O'Neill E, Fey PD, O'Gara JP. The major autolysin is redundant for Staphylococcus aureus USA300 LAC JE2 virulence in a murine device-related infection model. FEMS Microbiol Lett. 2016 May;363(9). doi: 10.1093/femsle/fnw087. Epub 2016 Apr 3. PubMed PMID: 27044299.

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Windham IH, Chaudhari SS, Bose JL, Thomas VC, Bayles KW. SrrAB Modulates Staphylococcus aureus Cell Death through Regulation of cidABC Transcription. J Bacteriol. 2016 Jan 25;198(7):1114-22. doi: 10.1128/JB.00954-15. PubMed PMID: 26811317; PubMed Central PMCID: PMC4800867.

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Krausz KL, Bose JL. Bacteriophage Transduction in Staphylococcus aureus: Broth-Based Method. Methods Mol Biol. 2016;1373:63-8. doi: 10.1007/7651_2014_185. PubMed PMID: 25646607.

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Bose JL. Preface. Methods Mol Biol. 2016;1373:v-vi. doi: 10.1007/978-1-4939-3158-3. PubMed PMID: 26764435.

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Lehman MK, Bose JL, Bayles KW. Allelic Exchange. Methods Mol Biol. 2016;1373:89-96. doi: 10.1007/7651_2014_187. PubMed PMID: 25646609.

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Krute CN, Bose JL. Understanding Staphylococcal Nomenclature. Methods Mol Biol. 2016;1373:1-7. doi: 10.1007/7651_2015_283. PubMed PMID: 26194711.

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Krausz KL, Bose JL. Rapid Isolation of DNA from Staphylococcus. Methods Mol Biol. 2016;1373:59-62. doi: 10.1007/7651_2014_184. PubMed PMID: 25682372.

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Bose JL. Chemical and UV Mutagenesis. Methods Mol Biol. 2016;1373:111-5. doi: 10.1007/7651_2014_190. PubMed PMID: 25646611.

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Lehman MK, Bose JL, Sharma-Kuinkel BK, Moormeier DE, Endres JL, Sadykov MR, Biswas I, Bayles KW. Identification of the amino acids essential for LytSR-mediated signal transduction in Staphylococcus aureus and their roles in biofilm-specific gene expression. Mol Microbiol. 2015 Feb;95(4):723-37. doi: 10.1111/mmi.12902. Epub 2015 Jan 16. PubMed PMID: 25491472; PubMed Central PMCID: PMC4347461.

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Septer AN, Bose JL, Lipzen A, Martin J, Whistler C, Stabb EV. Bright luminescence of Vibrio fischeri aconitase mutants reveals a connection between citrate and the Gac/Csr regulatory system. Mol Microbiol. 2015 Jan;95(2):283-96. doi: 10.1111/mmi.12864. Epub 2014 Dec 19. PubMed PMID: 25402589.

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Moormeier DE, Bose JL, Horswill AR, Bayles KW. Temporal and stochastic control of Staphylococcus aureus biofilm development. mBio. 2014 Oct 14;5(5):e01341-14. doi: 10.1128/mBio.01341-14. PubMed PMID: 25316695; PubMed Central PMCID: PMC4205790.

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Parsons JB, Broussard TC, Bose JL, Rosch JW, Jackson P, Subramanian C, Rock CO. Identification of a two-component fatty acid kinase responsible for host fatty acid incorporation by Staphylococcus aureus. Proc Natl Acad Sci U S A. 2014 Jul 22;111(29):10532-7. doi: 10.1073/pnas.1408797111. Epub 2014 Jul 7. PubMed PMID: 25002480; PubMed Central PMCID: PMC4115530.

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Bose JL, Daly SM, Hall PR, Bayles KW. Identification of the Staphylococcus aureus vfrAB operon, a novel virulence factor regulatory locus. Infect Immun. 2014 May;82(5):1813-22. doi: 10.1128/IAI.01655-13. Epub 2014 Feb 18. PubMed PMID: 24549328; PubMed Central PMCID: PMC3993444.

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Bose JL. Genetic manipulation of staphylococci. Methods Mol Biol. 2014;1106:101-11. doi: 10.1007/978-1-62703-736-5_8. PubMed PMID: 24222458.

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Lyell NL, Colton DM, Bose JL, Tumen-Velasquez MP, Kimbrough JH, Stabb EV. Cyclic AMP receptor protein regulates pheromone-mediated bioluminescence at multiple levels in Vibrio fischeri ES114. J Bacteriol. 2013 Nov;195(22):5051-63. doi: 10.1128/JB.00751-13. Epub 2013 Aug 30. PubMed PMID: 23995643; PubMed Central PMCID: PMC3811580.

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Gries CM, Bose JL, Nuxoll AS, Fey PD, Bayles KW. The Ktr potassium transport system in Staphylococcus aureus and its role in cell physiology, antimicrobial resistance and pathogenesis. Mol Microbiol. 2013 Aug;89(4):760-73. doi: 10.1111/mmi.12312. Epub 2013 Jul 17. PubMed PMID: 23815639; PubMed Central PMCID: PMC3754831.

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Bose JL, Fey PD, Bayles KW. Genetic tools to enhance the study of gene function and regulation in Staphylococcus aureus. Appl Environ Microbiol. 2013 Apr;79(7):2218-24. doi: 10.1128/AEM.00136-13. Epub 2013 Jan 25. PubMed PMID: 23354696; PubMed Central PMCID: PMC3623228.

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Fey PD, Endres JL, Yajjala VK, Widhelm TJ, Boissy RJ, Bose JL, Bayles KW. A genetic resource for rapid and comprehensive phenotype screening of nonessential Staphylococcus aureus genes. mBio. 2013 Feb 12;4(1):e00537-12. doi: 10.1128/mBio.00537-12. PubMed PMID: 23404398; PubMed Central PMCID: PMC3573662.

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Bose JL, Lehman MK, Fey PD, Bayles KW. Contribution of the Staphylococcus aureus Atl AM and GL murein hydrolase activities in cell division, autolysis, and biofilm formation. PLoS One. 2012;7(7):e42244. doi: 10.1371/journal.pone.0042244. Epub 2012 Jul 31. PubMed PMID: 22860095; PubMed Central PMCID: PMC3409170.

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Kaplan JB, Izano EA, Gopal P, Karwacki MT, Kim S, Bose JL, Bayles KW, Horswill AR. Low levels of β-lactam antibiotics induce extracellular DNA release and biofilm formation in Staphylococcus aureus. mBio. 2012;3(4):e00198-12. doi: 10.1128/mBio.00198-12. Print 2012. PubMed PMID: 22851659; PubMed Central PMCID: PMC3419523.