My Bibliography

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Bayoumi RA, Creasey AM, Babiker HA, Carlton JM, Sultan AA, Satti G, Sohal AK, Walliker D, Jensen JB, Arnot DE. Drug response and genetic characterization of Plasmodium falciparum clones recently isolated from a Sudanese village. Trans R Soc Trop Med Hyg. 1993 Jul-Aug;87(4):454-8. doi: 10.1016/0035-9203(93)90034-n. PubMed PMID: 8249079.

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Janse CJ, Carlton JM, Walliker D, Waters AP. Conserved location of genes on polymorphic chromosomes of four species of malaria parasites. Mol Biochem Parasitol. 1994 Dec;68(2):285-96. doi: 10.1016/0166-6851(94)90173-2. PubMed PMID: 7739674.

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Carlton JM, Howard J, Jensen JB, Walliker D. A rapid technique for the detection of DNA polymorphisms in Plasmodium. Exp Parasitol. 1995 Feb;80(1):163-6. doi: 10.1006/expr.1995.1020. PubMed PMID: 7821407.

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Baker DA, Thompson J, Daramola OO, Carlton JM, Targett GA. Sexual-stage-specific RNA expression of a new Plasmodium falciparum gene detected by in situ hybridisation. Mol Biochem Parasitol. 1995 Jun;72(1-2):193-201. doi: 10.1016/0166-6851(95)00073-a. PubMed PMID: 8538689.

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Howard J, Carlton JM, Walliker D, Jensen JB. Use of random amplified polymorphic DNA (RAPD) technique in inheritance studies of Plasmodium falciparum. J Parasitol. 1996 Dec;82(6):941-6. PubMed PMID: 8973403.

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Buckling AG, Taylor LH, Carlton JM, Read AF. Adaptive changes in Plasmodium transmission strategies following chloroquine chemotherapy. Proc Biol Sci. 1997 Apr 22;264(1381):553-9. doi: 10.1098/rspb.1997.0079. PubMed PMID: 9149425; PubMed Central PMCID: PMC1688398.

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Carlton JM, Vinkenoog R, Waters AP, Walliker D. Gene synteny in species of Plasmodium. Mol Biochem Parasitol. 1998 Jun 1;93(2):285-94. doi: 10.1016/s0166-6851(98)00043-7. PubMed PMID: 9662712.

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Carlton JM. Gene synteny across Plasmodium spp: could 'operon-like' structures exist?. Parasitol Today. 1999 May;15(5):178-9. doi: 10.1016/s0169-4758(99)01438-6. PubMed PMID: 10322349.

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Carlton JM, Galinski MR, Barnwell JW, Dame JB. Karyotype and synteny among the chromosomes of all four species of human malaria parasite. Mol Biochem Parasitol. 1999 Jun 25;101(1-2):23-32. doi: 10.1016/s0166-6851(99)00045-6. PubMed PMID: 10413040.

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Allred DR, Carlton JM, Satcher RL, Long JA, Brown WC, Patterson PE, O'Connor RM, Stroup SE. The ves multigene family of B. bovis encodes components of rapid antigenic variation at the infected erythrocyte surface. Mol Cell. 2000 Jan;5(1):153-62. doi: 10.1016/s1097-2765(00)80411-6. PubMed PMID: 10678177.

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Su X, Carlton JM. Genome display and typing of Plasmodium parasites using anchored PolyA and PolyT oligonucleotides. Exp Parasitol. 2000 Apr;94(4):273-8. doi: 10.1006/expr.2000.4492. PubMed PMID: 10831397.

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Carlton JM, Dame JB. The plasmodium vivax and P. berghei gene sequence tag projects. Parasitol Today. 2000 Oct;16(10):409. doi: 10.1016/s0169-4758(00)01781-6. PubMed PMID: 11006469.

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Ben Mamoun C, Gluzman IY, Hott C, MacMillan SK, Amarakone AS, Anderson DL, Carlton JM, Dame JB, Chakrabarti D, Martin RK, Brownstein BH, Goldberg DE. Co-ordinated programme of gene expression during asexual intraerythrocytic development of the human malaria parasite Plasmodium falciparum revealed by microarray analysis. Mol Microbiol. 2001 Jan;39(1):26-36. doi: 10.1046/j.1365-2958.2001.02222.x. PubMed PMID: 11123685.

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Carlton JM, Yowell CA, Sturrock KA, Dame JB. Biomagnetic separation of contaminating host leukocytes from plasmodium-infected erythrocytes. Exp Parasitol. 2001 Feb;97(2):111-4. doi: 10.1006/expr.2001.4594. PubMed PMID: 11281708.

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Deitsch KW, Carlton JM, Wootton JC, Wellems TE. Host sequences in Plasmodium falciparum and Plasmodium vivax genomic DNA: horizontal transfer or contamination artifact?. FEBS Lett. 2001 Feb 23;491(1-2):164-5. doi: 10.1016/s0014-5793(01)02154-8. PubMed PMID: 11245166.

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Carlton JM, Hayton K, Cravo PV, Walliker D. Of mice and malaria mutants: unravelling the genetics of drug resistance using rodent malaria models. Trends Parasitol. 2001 May;17(5):236-42. doi: 10.1016/s1471-4922(01)01899-2. Review. PubMed PMID: 11323308.

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Nomura T, Carlton JM, Baird JK, del Portillo HA, Fryauff DJ, Rathore D, Fidock DA, Su X, Collins WE, McCutchan TF, Wootton JC, Wellems TE. Evidence for different mechanisms of chloroquine resistance in 2 Plasmodium species that cause human malaria. J Infect Dis. 2001 Jun 1;183(11):1653-61. doi: 10.1086/320707. Epub 2001 Apr 27. PubMed PMID: 11343215.

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Carlton JM, Fidock DA, Djimdé A, Plowe CV, Wellems TE. Conservation of a novel vacuolar transporter in Plasmodium species and its central role in chloroquine resistance of P. falciparum. Curr Opin Microbiol. 2001 Aug;4(4):415-20. doi: 10.1016/s1369-5274(00)00228-9. Review. PubMed PMID: 11495804.

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Carlton JM, Muller R, Yowell CA, Fluegge MR, Sturrock KA, Pritt JR, Vargas-Serrato E, Galinski MR, Barnwell JW, Mulder N, Kanapin A, Cawley SE, Hide WA, Dame JB. Profiling the malaria genome: a gene survey of three species of malaria parasite with comparison to other apicomplexan species. Mol Biochem Parasitol. 2001 Dec;118(2):201-10. doi: 10.1016/s0166-6851(01)00371-1. PubMed PMID: 11738710.

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Carlton JM, Carucci DJ. Rodent models of malaria in the genomics era. Trends Parasitol. 2002 Mar;18(3):100-2. doi: 10.1016/s1471-4922(01)02229-2. PubMed PMID: 11854077.

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Gardner MJ, Hall N, Fung E, White O, Berriman M, Hyman RW, Carlton JM, Pain A, Nelson KE, Bowman S, Paulsen IT, James K, Eisen JA, Rutherford K, Salzberg SL, Craig A, Kyes S, Chan MS, Nene V, Shallom SJ, Suh B, Peterson J, Angiuoli S, Pertea M, Allen J, Selengut J, Haft D, Mather MW, Vaidya AB, Martin DM, Fairlamb AH, Fraunholz MJ, Roos DS, Ralph SA, McFadden GI, Cummings LM, Subramanian GM, Mungall C, Venter JC, Carucci DJ, Hoffman SL, Newbold C, Davis RW, Fraser CM, Barrell B. Genome sequence of the human malaria parasite Plasmodium falciparum. Nature. 2002 Oct 3;419(6906):498-511. doi: 10.1038/nature01097. PubMed PMID: 12368864; PubMed Central PMCID: PMC3836256.

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Carlton JM, Angiuoli SV, Suh BB, Kooij TW, Pertea M, Silva JC, Ermolaeva MD, Allen JE, Selengut JD, Koo HL, Peterson JD, Pop M, Kosack DS, Shumway MF, Bidwell SL, Shallom SJ, van Aken SE, Riedmuller SB, Feldblyum TV, Cho JK, Quackenbush J, Sedegah M, Shoaibi A, Cummings LM, Florens L, Yates JR, Raine JD, Sinden RE, Harris MA, Cunningham DA, Preiser PR, Bergman LW, Vaidya AB, van Lin LH, Janse CJ, Waters AP, Smith HO, White OR, Salzberg SL, Venter JC, Fraser CM, Hoffman SL, Gardner MJ, Carucci DJ. Genome sequence and comparative analysis of the model rodent malaria parasite Plasmodium yoelii yoelii. Nature. 2002 Oct 3;419(6906):512-9. doi: 10.1038/nature01099. PubMed PMID: 12368865.

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Gardner MJ, Shallom SJ, Carlton JM, Salzberg SL, Nene V, Shoaibi A, Ciecko A, Lynn J, Rizzo M, Weaver B, Jarrahi B, Brenner M, Parvizi B, Tallon L, Moazzez A, Granger D, Fujii C, Hansen C, Pederson J, Feldblyum T, Peterson J, Suh B, Angiuoli S, Pertea M, Allen J, Selengut J, White O, Cummings LM, Smith HO, Adams MD, Venter JC, Carucci DJ, Hoffman SL, Fraser CM. Sequence of Plasmodium falciparum chromosomes 2, 10, 11 and 14. Nature. 2002 Oct 3;419(6906):531-4. doi: 10.1038/nature01094. PubMed PMID: 12368868.

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Cravo PV, Carlton JM, Hunt P, Bisoni L, Padua RA, Walliker D. Genetics of mefloquine resistance in the rodent malaria parasite Plasmodium chabaudi. Antimicrob Agents Chemother. 2003 Feb;47(2):709-18. doi: 10.1128/AAC.47.2.709-718.2003. PubMed PMID: 12543682; PubMed Central PMCID: PMC151772.

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Feng X, Carlton JM, Joy DA, Mu J, Furuya T, Suh BB, Wang Y, Barnwell JW, Su XZ. Single-nucleotide polymorphisms and genome diversity in Plasmodium vivax. Proc Natl Acad Sci U S A. 2003 Jul 8;100(14):8502-7. doi: 10.1073/pnas.1232502100. Epub 2003 Jun 10. PubMed PMID: 12799466; PubMed Central PMCID: PMC166258.

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Dame JB, Yowell CA, Omara-Opyene L, Carlton JM, Cooper RA, Li T. Plasmepsin 4, the food vacuole aspartic proteinase found in all Plasmodium spp. infecting man. Mol Biochem Parasitol. 2003 Aug 11;130(1):1-12. doi: 10.1016/s0166-6851(03)00137-3. PubMed PMID: 14550891.

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Gomez JC, McNamara DT, Bockarie MJ, Baird JK, Carlton JM, Zimmerman PA. Identification of a polymorphic Plasmodium vivax microsatellite marker. Am J Trop Med Hyg. 2003 Oct;69(4):377-9. PubMed PMID: 14640496; PubMed Central PMCID: PMC3728893.

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Carlton JM. Genome sequencing and comparative genomics of tropical disease pathogens. Cell Microbiol. 2003 Dec;5(12):861-73. doi: 10.1046/j.1462-5822.2003.00331.x. Review. PubMed PMID: 14641172.

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Hunt P, Cravo PV, Donleavy P, Carlton JM, Walliker D. Chloroquine resistance in Plasmodium chabaudi: are chloroquine-resistance transporter (crt) and multi-drug resistance (mdr1) orthologues involved?. Mol Biochem Parasitol. 2004 Jan;133(1):27-35. doi: 10.1016/j.molbiopara.2003.08.010. PubMed PMID: 14668009.

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Haddad D, Bilcikova E, Witney AA, Carlton JM, White CE, Blair PL, Chattopadhyay R, Russell J, Abot E, Charoenvit Y, Aguiar JC, Carucci DJ, Weiss WR. Novel antigen identification method for discovery of protective malaria antigens by rapid testing of DNA vaccines encoding exons from the parasite genome. Infect Immun. 2004 Mar;72(3):1594-602. doi: 10.1128/IAI.72.3.1594-1602.2004. PubMed PMID: 14977966; PubMed Central PMCID: PMC356014.

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Lyons EJ, Carlton JM. Mind the gap: bridging the divide between clinical and molecular studies of the trichomonads. Trends Parasitol. 2004 May;20(5):204-7. doi: 10.1016/j.pt.2004.03.005. Review. PubMed PMID: 15105016.

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Silva JC, Bastida F, Bidwell SL, Johnson PJ, Carlton JM. A potentially functional mariner transposable element in the protist Trichomonas vaginalis. Mol Biol Evol. 2005 Jan;22(1):126-34. doi: 10.1093/molbev/msh260. Epub 2004 Sep 15. PubMed PMID: 15371525; PubMed Central PMCID: PMC1406841.

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Hall N, Karras M, Raine JD, Carlton JM, Kooij TW, Berriman M, Florens L, Janssen CS, Pain A, Christophides GK, James K, Rutherford K, Harris B, Harris D, Churcher C, Quail MA, Ormond D, Doggett J, Trueman HE, Mendoza J, Bidwell SL, Rajandream MA, Carucci DJ, Yates JR 3rd, Kafatos FC, Janse CJ, Barrell B, Turner CM, Waters AP, Sinden RE. A comprehensive survey of the Plasmodium life cycle by genomic, transcriptomic, and proteomic analyses. Science. 2005 Jan 7;307(5706):82-6. doi: 10.1126/science.1103717. PubMed PMID: 15637271.

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Vanácová S, Yan W, Carlton JM, Johnson PJ. Spliceosomal introns in the deep-branching eukaryote Trichomonas vaginalis. Proc Natl Acad Sci U S A. 2005 Mar 22;102(12):4430-5. doi: 10.1073/pnas.0407500102. Epub 2005 Mar 11. PubMed PMID: 15764705; PubMed Central PMCID: PMC554003.

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Wang R, Arevalo-Herrera M, Gardner MJ, Bonelo A, Carlton JM, Gomez A, Vera O, Soto L, Vergara J, Bidwell SL, Domingo A, Fraser CM, Herrera S. Immune responses to Plasmodium vivax pre-erythrocytic stage antigens in naturally exposed Duffy-negative humans: a potential model for identification of liver-stage antigens. Eur J Immunol. 2005 Jun;35(6):1859-68. doi: 10.1002/eji.200425807. PubMed PMID: 15864779.

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Gardner MJ, Bishop R, Shah T, de Villiers EP, Carlton JM, Hall N, Ren Q, Paulsen IT, Pain A, Berriman M, Wilson RJ, Sato S, Ralph SA, Mann DJ, Xiong Z, Shallom SJ, Weidman J, Jiang L, Lynn J, Weaver B, Shoaibi A, Domingo AR, Wasawo D, Crabtree J, Wortman JR, Haas B, Angiuoli SV, Creasy TH, Lu C, Suh B, Silva JC, Utterback TR, Feldblyum TV, Pertea M, Allen J, Nierman WC, Taracha EL, Salzberg SL, White OR, Fitzhugh HA, Morzaria S, Venter JC, Fraser CM, Nene V. Genome sequence of Theileria parva, a bovine pathogen that transforms lymphocytes. Science. 2005 Jul 1;309(5731):134-7. doi: 10.1126/science.1110439. PubMed PMID: 15994558.

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El-Sayed NM, Myler PJ, Blandin G, Berriman M, Crabtree J, Aggarwal G, Caler E, Renauld H, Worthey EA, Hertz-Fowler C, Ghedin E, Peacock C, Bartholomeu DC, Haas BJ, Tran AN, Wortman JR, Alsmark UC, Angiuoli S, Anupama A, Badger J, Bringaud F, Cadag E, Carlton JM, Cerqueira GC, Creasy T, Delcher AL, Djikeng A, Embley TM, Hauser C, Ivens AC, Kummerfeld SK, Pereira-Leal JB, Nilsson D, Peterson J, Salzberg SL, Shallom J, Silva JC, Sundaram J, Westenberger S, White O, Melville SE, Donelson JE, Andersson B, Stuart KD, Hall N. Comparative genomics of trypanosomatid parasitic protozoa. Science. 2005 Jul 15;309(5733):404-9. doi: 10.1126/science.1112181. PubMed PMID: 16020724; NIHMSID:NIHMS414480.

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Lal K, Field MC, Carlton JM, Warwicker J, Hirt RP. Identification of a very large Rab GTPase family in the parasitic protozoan Trichomonas vaginalis. Mol Biochem Parasitol. 2005 Oct;143(2):226-35. doi: 10.1016/j.molbiopara.2005.06.008. PubMed PMID: 16099517.

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Cui L, Fan Q, Hu Y, Karamycheva SA, Quackenbush J, Khuntirat B, Sattabongkot J, Carlton JM. Gene discovery in Plasmodium vivax through sequencing of ESTs from mixed blood stages. Mol Biochem Parasitol. 2005 Nov;144(1):1-9. doi: 10.1016/j.molbiopara.2005.05.016. PubMed PMID: 16085323.

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Kooij TW, Carlton JM, Bidwell SL, Hall N, Ramesar J, Janse CJ, Waters AP. A Plasmodium whole-genome synteny map: indels and synteny breakpoints as foci for species-specific genes. PLoS Pathog. 2005 Dec;1(4):e44. doi: 10.1371/journal.ppat.0010044. Epub 2005 Dec 23. PubMed PMID: 16389297; PubMed Central PMCID: PMC1317653.

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Sargeant TJ, Marti M, Caler E, Carlton JM, Simpson K, Speed TP, Cowman AF. Lineage-specific expansion of proteins exported to erythrocytes in malaria parasites. Genome Biol. 2006;7(2):R12. doi: 10.1186/gb-2006-7-2-r12. Epub 2006 Feb 20. PubMed PMID: 16507167; PubMed Central PMCID: PMC1431722.

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Imwong M, Sudimack D, Pukrittayakamee S, Osorio L, Carlton JM, Day NP, White NJ, Anderson TJ. Microsatellite variation, repeat array length, and population history of Plasmodium vivax. Mol Biol Evol. 2006 May;23(5):1016-8. doi: 10.1093/molbev/msj116. Epub 2006 Feb 28. PubMed PMID: 16507919.

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Eisen JA, Coyne RS, Wu M, Wu D, Thiagarajan M, Wortman JR, Badger JH, Ren Q, Amedeo P, Jones KM, Tallon LJ, Delcher AL, Salzberg SL, Silva JC, Haas BJ, Majoros WH, Farzad M, Carlton JM, Smith RK Jr, Garg J, Pearlman RE, Karrer KM, Sun L, Manning G, Elde NC, Turkewitz AP, Asai DJ, Wilkes DE, Wang Y, Cai H, Collins K, Stewart BA, Lee SR, Wilamowska K, Weinberg Z, Ruzzo WL, Wloga D, Gaertig J, Frankel J, Tsao CC, Gorovsky MA, Keeling PJ, Waller RF, Patron NJ, Cherry JM, Stover NA, Krieger CJ, del Toro C, Ryder HF, Williamson SC, Barbeau RA, Hamilton EP, Orias E. Macronuclear genome sequence of the ciliate Tetrahymena thermophila, a model eukaryote. PLoS Biol. 2006 Sep;4(9):e286. doi: 10.1371/journal.pbio.0040286. PubMed PMID: 16933976; PubMed Central PMCID: PMC1557398.

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Carlton JM. Toward a malaria haplotype map. Nat Genet. 2007 Jan;39(1):5-6. doi: 10.1038/ng0107-5. PubMed PMID: 17192778.

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Carlton JM, Hirt RP, Silva JC, Delcher AL, Schatz M, Zhao Q, Wortman JR, Bidwell SL, Alsmark UC, Besteiro S, Sicheritz-Ponten T, Noel CJ, Dacks JB, Foster PG, Simillion C, Van de Peer Y, Miranda-Saavedra D, Barton GJ, Westrop GD, Müller S, Dessi D, Fiori PL, Ren Q, Paulsen I, Zhang H, Bastida-Corcuera FD, Simoes-Barbosa A, Brown MT, Hayes RD, Mukherjee M, Okumura CY, Schneider R, Smith AJ, Vanacova S, Villalvazo M, Haas BJ, Pertea M, Feldblyum TV, Utterback TR, Shu CL, Osoegawa K, de Jong PJ, Hrdy I, Horvathova L, Zubacova Z, Dolezal P, Malik SB, Logsdon JM Jr, Henze K, Gupta A, Wang CC, Dunne RL, Upcroft JA, Upcroft P, White O, Salzberg SL, Tang P, Chiu CH, Lee YS, Embley TM, Coombs GH, Mottram JC, Tachezy J, Fraser-Liggett CM, Johnson PJ. Draft genome sequence of the sexually transmitted pathogen Trichomonas vaginalis. Science. 2007 Jan 12;315(5809):207-12. doi: 10.1126/science.1132894. PubMed PMID: 17218520; PubMed Central PMCID: PMC2080659.

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Imwong M, Nair S, Pukrittayakamee S, Sudimack D, Williams JT, Mayxay M, Newton PN, Kim JR, Nandy A, Osorio L, Carlton JM, White NJ, Day NP, Anderson TJ. Contrasting genetic structure in Plasmodium vivax populations from Asia and South America. Int J Parasitol. 2007 Jul;37(8-9):1013-22. doi: 10.1016/j.ijpara.2007.02.010. Epub 2007 Mar 12. PubMed PMID: 17442318.

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Joshi H, Prajapati SK, Verma A, Kang'a S, Carlton JM. Plasmodium vivax in India. Trends Parasitol. 2008 May;24(5):228-35. doi: 10.1016/j.pt.2008.01.007. Epub 2008 Apr 9. Review. PubMed PMID: 18403267.

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Joy DA, Gonzalez-Ceron L, Carlton JM, Gueye A, Fay M, McCutchan TF, Su XZ. Local adaptation and vector-mediated population structure in Plasmodium vivax malaria. Mol Biol Evol. 2008 Jun;25(6):1245-52. doi: 10.1093/molbev/msn073. Epub 2008 Apr 2. PubMed PMID: 18385220; PubMed Central PMCID: PMC2386084.

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Carlton JM, Adams JH, Silva JC, Bidwell SL, Lorenzi H, Caler E, Crabtree J, Angiuoli SV, Merino EF, Amedeo P, Cheng Q, Coulson RM, Crabb BS, Del Portillo HA, Essien K, Feldblyum TV, Fernandez-Becerra C, Gilson PR, Gueye AH, Guo X, Kang'a S, Kooij TW, Korsinczky M, Meyer EV, Nene V, Paulsen I, White O, Ralph SA, Ren Q, Sargeant TJ, Salzberg SL, Stoeckert CJ, Sullivan SA, Yamamoto MM, Hoffman SL, Wortman JR, Gardner MJ, Galinski MR, Barnwell JW, Fraser-Liggett CM. Comparative genomics of the neglected human malaria parasite Plasmodium vivax. Nature. 2008 Oct 9;455(7214):757-63. doi: 10.1038/nature07327. PubMed PMID: 18843361; PubMed Central PMCID: PMC2651158.

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Bozdech Z, Mok S, Hu G, Imwong M, Jaidee A, Russell B, Ginsburg H, Nosten F, Day NP, White NJ, Carlton JM, Preiser PR. The transcriptome of Plasmodium vivax reveals divergence and diversity of transcriptional regulation in malaria parasites. Proc Natl Acad Sci U S A. 2008 Oct 21;105(42):16290-5. doi: 10.1073/pnas.0807404105. Epub 2008 Oct 13. PubMed PMID: 18852452; PubMed Central PMCID: PMC2571024.