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Error occurred: The following PMID is not available: 27701073
Garza AG, Biran R, Wohlschlegel JA, Manson MD. Mutations in motB suppressible by changes in stator or rotor components of the bacterial flagellar motor. J Mol Biol. 1996 May 3;258(2):270-85. doi: 10.1006/jmbi.1996.0249. PubMed PMID: 8627625.
Pinto S, Quintana DG, Smith P, Mihalek RM, Hou ZH, Boynton S, Jones CJ, Hendricks M, Velinzon K, Wohlschlegel JA, Austin RJ, Lane WS, Tully T, Dutta A. latheo encodes a subunit of the origin recognition complex and disrupts neuronal proliferation and adult olfactory memory when mutant. Neuron. 1999 May;23(1):45-54. doi: 10.1016/s0896-6273(00)80752-7. PubMed PMID: 10402192; NIHMSID:NIHMS248391.
Wohlschlegel JA, Dwyer BT, Dhar SK, Cvetic C, Walter JC, Dutta A. Inhibition of eukaryotic DNA replication by geminin binding to Cdt1. Science. 2000 Dec 22;290(5500):2309-12. doi: 10.1126/science.290.5500.2309. PubMed PMID: 11125146.
Takeda DY, Wohlschlegel JA, Dutta A. A bipartite substrate recognition motif for cyclin-dependent kinases. J Biol Chem. 2001 Jan 19;276(3):1993-7. doi: 10.1074/jbc.M005719200. Epub 2000 Nov 6. PubMed PMID: 11067844.
Wohlschlegel JA, Dwyer BT, Takeda DY, Dutta A. Mutational analysis of the Cy motif from p21 reveals sequence degeneracy and specificity for different cyclin-dependent kinases. Mol Cell Biol. 2001 Aug;21(15):4868-74. doi: 10.1128/MCB.21.15.4868-4874.2001. PubMed PMID: 11438644; PubMed Central PMCID: PMC87195.
Dhar SK, Yoshida K, Machida Y, Khaira P, Chaudhuri B, Wohlschlegel JA, Leffak M, Yates J, Dutta A. Replication from oriP of Epstein-Barr virus requires human ORC and is inhibited by geminin. Cell. 2001 Aug 10;106(3):287-96. doi: 10.1016/s0092-8674(01)00458-5. PubMed PMID: 11509178.
Wohlschlegel JA, Dhar SK, Prokhorova TA, Dutta A, Walter JC. Xenopus Mcm10 binds to origins of DNA replication after Mcm2-7 and stimulates origin binding of Cdc45. Mol Cell. 2002 Feb;9(2):233-40. doi: 10.1016/s1097-2765(02)00456-2. PubMed PMID: 11864598.
Wohlschlegel JA, Kutok JL, Weng AP, Dutta A. Expression of geminin as a marker of cell proliferation in normal tissues and malignancies. Am J Pathol. 2002 Jul;161(1):267-73. doi: 10.1016/S0002-9440(10)64178-8. PubMed PMID: 12107111; PubMed Central PMCID: PMC1850683.
Wohlschlegel JA, Yates JR. Proteomics: where's Waldo in yeast?. Nature. 2003 Oct 16;425(6959):671-2. doi: 10.1038/425671a. PubMed PMID: 14562083.
Flick K, Ouni I, Wohlschlegel JA, Capati C, McDonald WH, Yates JR, Kaiser P. Proteolysis-independent regulation of the transcription factor Met4 by a single Lys 48-linked ubiquitin chain. Nat Cell Biol. 2004 Jul;6(7):634-41. doi: 10.1038/ncb1143. Epub 2004 Jun 20. PubMed PMID: 15208638.
Venable JD, Dong MQ, Wohlschlegel J, Dillin A, Yates JR. Automated approach for quantitative analysis of complex peptide mixtures from tandem mass spectra. Nat Methods. 2004 Oct;1(1):39-45. doi: 10.1038/nmeth705. Epub 2004 Sep 29. PubMed PMID: 15782151.
Wohlschlegel JA, Johnson ES, Reed SI, Yates JR 3rd. Global analysis of protein sumoylation in Saccharomyces cerevisiae. J Biol Chem. 2004 Oct 29;279(44):45662-8. doi: 10.1074/jbc.M409203200. Epub 2004 Aug 23. PubMed PMID: 15326169.
Jónsson ZO, Jha S, Wohlschlegel JA, Dutta A. Rvb1p/Rvb2p recruit Arp5p and assemble a functional Ino80 chromatin remodeling complex. Mol Cell. 2004 Nov 5;16(3):465-77. doi: 10.1016/j.molcel.2004.09.033. PubMed PMID: 15525518.
Kaiser P, Wohlschlegel J. Identification of ubiquitination sites and determination of ubiquitin-chain architectures by mass spectrometry. Methods Enzymol. 2005;399:266-77. doi: 10.1016/S0076-6879(05)99018-6. PubMed PMID: 16338362.
Liu J, Rivas FV, Wohlschlegel J, Yates JR 3rd, Parker R, Hannon GJ. A role for the P-body component GW182 in microRNA function. Nat Cell Biol. 2005 Dec;7(12):1261-6. doi: 10.1038/ncb1333. Epub 2005 Nov 13. PubMed PMID: 16284623; PubMed Central PMCID: PMC1804202.
Sadygov R, Wohlschlegel J, Park SK, Xu T, Yates JR 3rd. Central limit theorem as an approximation for intensity-based scoring function. Anal Chem. 2006 Jan 1;78(1):89-95. doi: 10.1021/ac051206r. PubMed PMID: 16383314.
Duchaine TF, Wohlschlegel JA, Kennedy S, Bei Y, Conte D Jr, Pang K, Brownell DR, Harding S, Mitani S, Ruvkun G, Yates JR 3rd, Mello CC. Functional proteomics reveals the biochemical niche of C. elegans DCR-1 in multiple small-RNA-mediated pathways. Cell. 2006 Jan 27;124(2):343-54. doi: 10.1016/j.cell.2005.11.036. PubMed PMID: 16439208.
Pebernard S, Wohlschlegel J, McDonald WH, Yates JR 3rd, Boddy MN. The Nse5-Nse6 dimer mediates DNA repair roles of the Smc5-Smc6 complex. Mol Cell Biol. 2006 Mar;26(5):1617-30. doi: 10.1128/MCB.26.5.1617-1630.2006. PubMed PMID: 16478984; PubMed Central PMCID: PMC1430260.
Wohlschlegel JA, Johnson ES, Reed SI, Yates JR 3rd. Improved identification of SUMO attachment sites using C-terminal SUMO mutants and tailored protease digestion strategies. J Proteome Res. 2006 Apr;5(4):761-70. doi: 10.1021/pr050451o. PubMed PMID: 16602682; PubMed Central PMCID: PMC2535609.
Ernkvist M, Aase K, Ukomadu C, Wohlschlegel J, Blackman R, Veitonmäki N, Bratt A, Dutta A, Holmgren L. p130-angiomotin associates to actin and controls endothelial cell shape. FEBS J. 2006 May;273(9):2000-11. doi: 10.1111/j.1742-4658.2006.05216.x. PubMed PMID: 16640563; NIHMSID:NIHMS248352.
Martín V, Chahwan C, Gao H, Blais V, Wohlschlegel J, Yates JR 3rd, McGowan CH, Russell P. Sws1 is a conserved regulator of homologous recombination in eukaryotic cells. EMBO J. 2006 Jun 7;25(11):2564-74. doi: 10.1038/sj.emboj.7601141. Epub 2006 May 18. PubMed PMID: 16710300; PubMed Central PMCID: PMC1478202.
de Bruin RA, Kalashnikova TI, Chahwan C, McDonald WH, Wohlschlegel J, Yates J 3rd, Russell P, Wittenberg C. Constraining G1-specific transcription to late G1 phase: the MBF-associated corepressor Nrm1 acts via negative feedback. Mol Cell. 2006 Aug;23(4):483-96. doi: 10.1016/j.molcel.2006.06.025. PubMed PMID: 16916637.
Raffa GD, Wohlschlegel J, Yates JR 3rd, Boddy MN. SUMO-binding motifs mediate the Rad60-dependent response to replicative stress and self-association. J Biol Chem. 2006 Sep 22;281(38):27973-81. doi: 10.1074/jbc.M601943200. Epub 2006 Jul 31. PubMed PMID: 16880212.
Sedgwick C, Rawluk M, Decesare J, Raithatha S, Wohlschlegel J, Semchuk P, Ellison M, Yates J 3rd, Stuart D. Saccharomyces cerevisiae Ime2 phosphorylates Sic1 at multiple PXS/T sites but is insufficient to trigger Sic1 degradation. Biochem J. 2006 Oct 1;399(1):151-60. doi: 10.1042/BJ20060363. PubMed PMID: 16776651; PubMed Central PMCID: PMC1570159.
Venable JD, Wohlschlegel J, McClatchy DB, Park SK, Yates JR 3rd. Relative quantification of stable isotope labeled peptides using a linear ion trap-Orbitrap hybrid mass spectrometer. Anal Chem. 2007 Apr 15;79(8):3056-64. doi: 10.1021/ac062054i. Epub 2007 Mar 17. PubMed PMID: 17367114; PubMed Central PMCID: PMC3586273.
Motoyama A, Xu T, Ruse CI, Wohlschlegel JA, Yates JR 3rd. Anion and cation mixed-bed ion exchange for enhanced multidimensional separations of peptides and phosphopeptides. Anal Chem. 2007 May 15;79(10):3623-34. doi: 10.1021/ac062292d. Epub 2007 Apr 6. PubMed PMID: 17411013; PubMed Central PMCID: PMC2538959.
Zhu W, Ukomadu C, Jha S, Senga T, Dhar SK, Wohlschlegel JA, Nutt LK, Kornbluth S, Dutta A. Mcm10 and And-1/CTF4 recruit DNA polymerase alpha to chromatin for initiation of DNA replication. Genes Dev. 2007 Sep 15;21(18):2288-99. doi: 10.1101/gad.1585607. Epub 2007 Aug 30. PubMed PMID: 17761813; PubMed Central PMCID: PMC1973143.
Usaite R, Wohlschlegel J, Venable JD, Park SK, Nielsen J, Olsson L, Yates Iii JR. Characterization of global yeast quantitative proteome data generated from the wild-type and glucose repression saccharomyces cerevisiae strains: the comparison of two quantitative methods. J Proteome Res. 2008 Jan;7(1):266-75. doi: 10.1021/pr700580m. PubMed PMID: 18173223; PubMed Central PMCID: PMC2538956.
Olson BL, Hock MB, Ekholm-Reed S, Wohlschlegel JA, Dev KK, Kralli A, Reed SI. SCFCdc4 acts antagonistically to the PGC-1alpha transcriptional coactivator by targeting it for ubiquitin-mediated proteolysis. Genes Dev. 2008 Jan 15;22(2):252-64. doi: 10.1101/gad.1624208. PubMed PMID: 18198341; PubMed Central PMCID: PMC2192758.
Bellare P, Small EC, Huang X, Wohlschlegel JA, Staley JP, Sontheimer EJ. A role for ubiquitin in the spliceosome assembly pathway. Nat Struct Mol Biol. 2008 May;15(5):444-51. doi: 10.1038/nsmb.1401. Epub 2008 Apr 20. PubMed PMID: 18425143; PubMed Central PMCID: PMC2737727.
Czech B, Malone CD, Zhou R, Stark A, Schlingeheyde C, Dus M, Perrimon N, Kellis M, Wohlschlegel JA, Sachidanandam R, Hannon GJ, Brennecke J. An endogenous small interfering RNA pathway in Drosophila. Nature. 2008 Jun 5;453(7196):798-802. doi: 10.1038/nature07007. Epub 2008 May 7. PubMed PMID: 18463631; PubMed Central PMCID: PMC2895258.
Reed DE, Huang XM, Wohlschlegel JA, Levine MS, Senger K. DEAF-1 regulates immunity gene expression in Drosophila. Proc Natl Acad Sci U S A. 2008 Jun 17;105(24):8351-6. doi: 10.1073/pnas.0802921105. Epub 2008 Jun 11. PubMed PMID: 18550807; PubMed Central PMCID: PMC2448840.
Simoes-Barbosa A, Meloni D, Wohlschlegel JA, Konarska MM, Johnson PJ. Spliceosomal snRNAs in the unicellular eukaryote Trichomonas vaginalis are structurally conserved but lack a 5'-cap structure. RNA. 2008 Aug;14(8):1617-31. doi: 10.1261/rna.1045408. Epub 2008 Jul 2. PubMed PMID: 18596255; PubMed Central PMCID: PMC2491460.
de Bruin RA, Kalashnikova TI, Aslanian A, Wohlschlegel J, Chahwan C, Yates JR 3rd, Russell P, Wittenberg C. DNA replication checkpoint promotes G1-S transcription by inactivating the MBF repressor Nrm1. Proc Natl Acad Sci U S A. 2008 Aug 12;105(32):11230-5. doi: 10.1073/pnas.0801106105. Epub 2008 Aug 5. PubMed PMID: 18682565; PubMed Central PMCID: PMC2516226.
Wohlschlegel JA. Identification of SUMO-conjugated proteins and their SUMO attachment sites using proteomic mass spectrometry. Methods Mol Biol. 2009;497:33-49. doi: 10.1007/978-1-59745-566-4_3. Review. PubMed PMID: 19107409.
Zamudio JR, Mittra B, Chattopadhyay A, Wohlschlegel JA, Sturm NR, Campbell DA. Trypanosoma brucei spliced leader RNA maturation by the cap 1 2'-O-ribose methyltransferase and SLA1 H/ACA snoRNA pseudouridine synthase complex. Mol Cell Biol. 2009 Mar;29(5):1202-11. doi: 10.1128/MCB.01496-08. Epub 2008 Dec 22. PubMed PMID: 19103757; PubMed Central PMCID: PMC2643836.
Chuang LC, Teixeira LK, Wohlschlegel JA, Henze M, Yates JR, Méndez J, Reed SI. Phosphorylation of Mcm2 by Cdc7 promotes pre-replication complex assembly during cell-cycle re-entry. Mol Cell. 2009 Jul 31;35(2):206-16. doi: 10.1016/j.molcel.2009.06.014. PubMed PMID: 19647517; PubMed Central PMCID: PMC2725784.
Vagin VV, Wohlschlegel J, Qu J, Jonsson Z, Huang X, Chuma S, Girard A, Sachidanandam R, Hannon GJ, Aravin AA. Proteomic analysis of murine Piwi proteins reveals a role for arginine methylation in specifying interaction with Tudor family members. Genes Dev. 2009 Aug 1;23(15):1749-62. doi: 10.1101/gad.1814809. Epub 2009 Jul 7. PubMed PMID: 19584108; PubMed Central PMCID: PMC2720255.
Fabian MR, Mathonnet G, Sundermeier T, Mathys H, Zipprich JT, Svitkin YV, Rivas F, Jinek M, Wohlschlegel J, Doudna JA, Chen CY, Shyu AB, Yates JR 3rd, Hannon GJ, Filipowicz W, Duchaine TF, Sonenberg N. Mammalian miRNA RISC recruits CAF1 and PABP to affect PABP-dependent deadenylation. Mol Cell. 2009 Sep 24;35(6):868-80. doi: 10.1016/j.molcel.2009.08.004. Epub 2009 Aug 27. PubMed PMID: 19716330; PubMed Central PMCID: PMC2803087.
Zhou R, Czech B, Brennecke J, Sachidanandam R, Wohlschlegel JA, Perrimon N, Hannon GJ. Processing of Drosophila endo-siRNAs depends on a specific Loquacious isoform. RNA. 2009 Oct;15(10):1886-95. doi: 10.1261/rna.1611309. Epub 2009 Jul 27. PubMed PMID: 19635780; PubMed Central PMCID: PMC2743050.
Vashisht AA, Zumbrennen KB, Huang X, Powers DN, Durazo A, Sun D, Bhaskaran N, Persson A, Uhlen M, Sangfelt O, Spruck C, Leibold EA, Wohlschlegel JA. Control of iron homeostasis by an iron-regulated ubiquitin ligase. Science. 2009 Oct 30;326(5953):718-21. doi: 10.1126/science.1176333. Epub 2009 Sep 17. PubMed PMID: 19762596; PubMed Central PMCID: PMC2929180.
Konopka G, Bomar JM, Winden K, Coppola G, Jonsson ZO, Gao F, Peng S, Preuss TM, Wohlschlegel JA, Geschwind DH. Human-specific transcriptional regulation of CNS development genes by FOXP2. Nature. 2009 Nov 12;462(7270):213-7. doi: 10.1038/nature08549. PubMed PMID: 19907493; PubMed Central PMCID: PMC2778075.
Machida YJ, Machida Y, Vashisht AA, Wohlschlegel JA, Dutta A. The deubiquitinating enzyme BAP1 regulates cell growth via interaction with HCF-1. J Biol Chem. 2009 Dec 4;284(49):34179-88. doi: 10.1074/jbc.M109.046755. Epub 2009 Oct 8. PubMed PMID: 19815555; PubMed Central PMCID: PMC2797188.
Lomenick B, Hao R, Jonai N, Chin RM, Aghajan M, Warburton S, Wang J, Wu RP, Gomez F, Loo JA, Wohlschlegel JA, Vondriska TM, Pelletier J, Herschman HR, Clardy J, Clarke CF, Huang J. Target identification using drug affinity responsive target stability (DARTS). Proc Natl Acad Sci U S A. 2009 Dec 22;106(51):21984-9. doi: 10.1073/pnas.0910040106. Epub 2009 Dec 7. PubMed PMID: 19995983; PubMed Central PMCID: PMC2789755.
Hernandez A, Madina BR, Ro K, Wohlschlegel JA, Willard B, Kinter MT, Cruz-Reyes J. REH2 RNA helicase in kinetoplastid mitochondria: ribonucleoprotein complexes and essential motifs for unwinding and guide RNA (gRNA) binding. J Biol Chem. 2010 Jan 8;285(2):1220-8. doi: 10.1074/jbc.M109.051862. Epub 2009 Oct 22. PubMed PMID: 19850921; PubMed Central PMCID: PMC2801250.
Spielewoy N, Guaderrama M, Wohlschlegel JA, Ashe M, Yates JR 3rd, Wittenberg C. Npr2, yeast homolog of the human tumor suppressor NPRL2, is a target of Grr1 required for adaptation to growth on diverse nitrogen sources. Eukaryot Cell. 2010 Apr;9(4):592-601. doi: 10.1128/EC.00192-09. Epub 2010 Feb 12. PubMed PMID: 20154027; PubMed Central PMCID: PMC2863403.
Law JA, Ausin I, Johnson LM, Vashisht AA, Zhu JK, Wohlschlegel JA, Jacobsen SE. A protein complex required for polymerase V transcripts and RNA- directed DNA methylation in Arabidopsis. Curr Biol. 2010 May 25;20(10):951-6. doi: 10.1016/j.cub.2010.03.062. Epub 2010 Apr 22. PubMed PMID: 20409711; PubMed Central PMCID: PMC2972704.
de Miguel N, Lustig G, Twu O, Chattopadhyay A, Wohlschlegel JA, Johnson PJ. Proteome analysis of the surface of Trichomonas vaginalis reveals novel proteins and strain-dependent differential expression. Mol Cell Proteomics. 2010 Jul;9(7):1554-66. doi: 10.1074/mcp.M000022-MCP201. Epub 2010 May 13. PubMed PMID: 20467041; PubMed Central PMCID: PMC2938091.
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