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Williamson JR, Boxer SG. Synthesis of a thymidine phosphoramidite labelled with 13C at C6: relaxation studies of the loop region in a 13C labelled DNA hairpin. Nucleic Acids Res. 1988 Feb 25;16(4):1529-40. doi: 10.1093/nar/16.4.1529. PubMed PMID: 3347496; PubMed Central PMCID: PMC336332.
Williamson JR, Boxer SG. Multinuclear NMR studies of DNA hairpins. 2. Sequence-dependent structural variations. Biochemistry. 1989 Apr 4;28(7):2831-6. doi: 10.1021/bi00433a013. PubMed PMID: 2742815.
Williamson JR, Boxer SG. Multinuclear NMR studies of DNA hairpins. 1. Structure and dynamics of d(CGCGTTGTTCGCG). Biochemistry. 1989 Apr 4;28(7):2819-31. doi: 10.1021/bi00433a012. PubMed PMID: 2742814.
Williamson JR, Raghuraman MK, Cech TR. Monovalent cation-induced structure of telomeric DNA: the G-quartet model. Cell. 1989 Dec 1;59(5):871-80. doi: 10.1016/0092-8674(89)90610-7. PubMed PMID: 2590943.
Eimer W, Williamson JR, Boxer SG, Pecora R. Characterization of the overall and internal dynamics of short oligonucleotides by depolarized dynamic light scattering and NMR relaxation measurements. Biochemistry. 1990 Jan 23;29(3):799-811. doi: 10.1021/bi00455a030. PubMed PMID: 2337597.
Williamson JR, Celander DW. Rapid procedure for chemical sequencing of small oligonucleotides without ethanol precipitation. Nucleic Acids Res. 1990 Jan 25;18(2):379. doi: 10.1093/nar/18.2.379. PubMed PMID: 2183187; PubMed Central PMCID: PMC330294.
Zahler AM, Williamson JR, Cech TR, Prescott DM. Inhibition of telomerase by G-quartet DNA structures. Nature. 1991 Apr 25;350(6320):718-20. doi: 10.1038/350718a0. PubMed PMID: 2023635.
Puglisi JD, Tan R, Calnan BJ, Frankel AD, Williamson JR. Conformation of the TAR RNA-arginine complex by NMR spectroscopy. Science. 1992 Jul 3;257(5066):76-80. doi: 10.1126/science.1621097. PubMed PMID: 1621097.
Batey RT, Inada M, Kujawinski E, Puglisi JD, Williamson JR. Preparation of isotopically labeled ribonucleotides for multidimensional NMR spectroscopy of RNA. Nucleic Acids Res. 1992 Sep 11;20(17):4515-23. doi: 10.1093/nar/20.17.4515. PubMed PMID: 1383928; PubMed Central PMCID: PMC334179.
Williamson JR. G-quartets in biology: reprise. Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3124. doi: 10.1073/pnas.90.8.3124. Review. PubMed PMID: 7682693; PubMed Central PMCID: PMC46251.
Puglisi JD, Chen L, Frankel AD, Williamson JR. Role of RNA structure in arginine recognition of TAR RNA. Proc Natl Acad Sci U S A. 1993 Apr 15;90(8):3680-4. doi: 10.1073/pnas.90.8.3680. PubMed PMID: 7682716; PubMed Central PMCID: PMC46365.
Williamson JR. G-quartet structures in telomeric DNA. Annu Rev Biophys Biomol Struct. 1994;23:703-30. doi: 10.1146/ Review. PubMed PMID: 7919797.
Dias E, Battiste JL, Williamson JR. A chemical probe for glycosidic confirmation in telomeric DNA's. Journal of the American Chemical Society. 1994; 106:4479-4480.
Battiste JL, Tan R, Frankel AD, Williamson JR. Binding of an HIV Rev peptide to Rev responsive element RNA induces formation of purine-purine base pairs. Biochemistry. 1994 Mar 15;33(10):2741-7. doi: 10.1021/bi00176a001. PubMed PMID: 8130185.
Williamson JR. RNA origami. Nat Struct Biol. 1994 May;1(5):270-2. doi: 10.1038/nsb0594-270. PubMed PMID: 7545071.
Zarrinkar PP, Williamson JR. Kinetic intermediates in RNA folding. Science. 1994 Aug 12;265(5174):918-24. doi: 10.1126/science.8052848. PubMed PMID: 8052848.
Puglisi EV, Puglisi JD, Williamson JR, RajBhandary UL. NMR analysis of tRNA acceptor stem microhelices: discriminator base change affects tRNA conformation at the 3' end. Proc Natl Acad Sci U S A. 1994 Nov 22;91(24):11467-71. doi: 10.1073/pnas.91.24.11467. PubMed PMID: 7972085; PubMed Central PMCID: PMC45252.
Treiber DK, Williamson JR. A simple method for preparing pools of synthetic oligonucleotides with random point deletions. Nucleic Acids Res. 1995 Sep 11;23(17):3603-4. doi: 10.1093/nar/23.17.3603. PubMed PMID: 7567476; PubMed Central PMCID: PMC307244.
Battiste JL, Tan R, Frankel AD, Williamson JR. Assignment and modeling of the Rev Response Element RNA bound to a Rev peptide using 13C-heteronuclear NMR. J Biomol NMR. 1995 Dec;6(4):375-89. doi: 10.1007/BF00197637. PubMed PMID: 8563466.
Tolbert TJ, Williamson JR. Preparation of deuterated RNA for NMR Studies using a combination of chemical and enzymatic synthesis. Journal of the American Chemical Society. 1996; 118:7929-7940.
Zarrinkar PP, Williamson JR. The P9.1-P9.2 peripheral extension helps guide folding of the Tetrahymena ribozyme. Nucleic Acids Res. 1996 Mar 1;24(5):854-8. doi: 10.1093/nar/24.5.854. PubMed PMID: 8600452; PubMed Central PMCID: PMC145724.
Zarrinkar PP, Williamson JR. The kinetic folding pathway of the Tetrahymena ribozyme reveals possible similarities between RNA and protein folding. Nat Struct Biol. 1996 May;3(5):432-8. doi: 10.1038/nsb0596-432. PubMed PMID: 8612073.
Zarrinkar PP, Wang J, Williamson JR. Slow folding kinetics of RNase P RNA. RNA. 1996 Jun;2(6):564-73. PubMed PMID: 8718685; PubMed Central PMCID: PMC1369395.
Williamson JR. Aptly named aptamers display their aptitude. Nature. 1996 Jul 11;382(6587):112-3. doi: 10.1038/382112a0. PubMed PMID: 8700196.
Batey RT, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: I. Defining the minimal RNA site. J Mol Biol. 1996 Aug 30;261(4):536-49. doi: 10.1006/jmbi.1996.0481. PubMed PMID: 8794875.
Batey RT, Williamson JR. Interaction of the Bacillus stearothermophilus ribosomal protein S15 with 16 S rRNA: II. Specificity determinants of RNA-protein recognition. J Mol Biol. 1996 Aug 30;261(4):550-67. doi: 10.1006/jmbi.1996.0482. PubMed PMID: 8794876.
Battiste JL, Mao H, Rao NS, Tan R, Muhandiram DR, Kay LE, Frankel AD, Williamson JR. Alpha helix-RNA major groove recognition in an HIV-1 rev peptide-RRE RNA complex. Science. 1996 Sep 13;273(5281):1547-51. doi: 10.1126/science.273.5281.1547. PubMed PMID: 8703216.
Rao NS, Legault P, Muhandiram DR, Greenblatt J, Battiste JL, Williamson JR, Kay LE. NMR pulse schemes for the sequential assignment of arginine side-chain H epsilon protons. J Magn Reson B. 1996 Dec;113(3):272-6. doi: 10.1006/jmrb.1996.0188. PubMed PMID: 8995846.
Batey RT, Cloutier N, Mao H, Williamson JR. Improved large scale culture of Methylophilus methylotrophus for 13C/15N labeling and random fractional deuteration of ribonucleotides. Nucleic Acids Res. 1996 Dec 1;24(23):4836-7. doi: 10.1093/nar/24.23.4836. PubMed PMID: 8972874; PubMed Central PMCID: PMC146305.
Sun B, Rienstra CM, Costa PR, Williamson JR. 3D 15N-13C-13C Chemical Shift Correlation Spectroscopy in Rotating Solids. Journal of the American Chemical Society. 1997; 119:8540-8546.
Tolbert TJ, Williamson JR. Preparation of Specifically Deuterated and 13C-labeled RNA for NMR Studies using Enzymatic Synthesis. Journal of the American Chemical Society. 1997; 119:12100-12108.
Cilley CD, Williamson JR. Analysis of bacteriophage N protein and peptide binding to boxB RNA using polyacrylamide gel coelectrophoresis (PACE). RNA. 1997 Jan;3(1):57-67. PubMed PMID: 8990399; PubMed Central PMCID: PMC1369462.
Curtis D, Treiber DK, Tao F, Zamore PD, Williamson JR, Lehmann R. A CCHC metal-binding domain in Nanos is essential for translational regulation. EMBO J. 1997 Feb 17;16(4):834-43. doi: 10.1093/emboj/16.4.834. PubMed PMID: 9049312; PubMed Central PMCID: PMC1169684.
Brodsky AS, Williamson JR. Solution structure of the HIV-2 TAR-argininamide complex. J Mol Biol. 1997 Apr 4;267(3):624-39. doi: 10.1006/jmbi.1996.0879. PubMed PMID: 9126842.
Zamore PD, Williamson JR, Lehmann R. The Pumilio protein binds RNA through a conserved domain that defines a new class of RNA-binding proteins. RNA. 1997 Dec;3(12):1421-33. PubMed PMID: 9404893; PubMed Central PMCID: PMC1369583.
Dayie KT, Tolbert TJ, Williamson JR. 3D C(CC)H TOCSY experiment for assigning protons and carbons in uniformly 13C- and selectively 2H-labeled RNA. J Magn Reson. 1998 Jan;130(1):97-101. doi: 10.1006/jmre.1997.1286. PubMed PMID: 9469903.
Orr JW, Hagerman PJ, Williamson JR. Protein and Mg(2+)-induced conformational changes in the S15 binding site of 16 S ribosomal RNA. J Mol Biol. 1998 Jan 23;275(3):453-64. doi: 10.1006/jmbi.1997.1489. PubMed PMID: 9466923.
Treiber DK, Rook MS, Zarrinkar PP, Williamson JR. Kinetic intermediates trapped by native interactions in RNA folding. Science. 1998 Mar 20;279(5358):1943-6. doi: 10.1126/science.279.5358.1943. PubMed PMID: 9506945.
Brodsky AS, Erlacher HA, Williamson JR. NMR evidence for a base triple in the HIV-2 TAR C-G.C+ mutant-argininamide complex. Nucleic Acids Res. 1998 Apr 15;26(8):1991-5. doi: 10.1093/nar/26.8.1991. PubMed PMID: 9518494; PubMed Central PMCID: PMC147484.
Batey RT, Williamson JR. Effects of polyvalent cations on the folding of an rRNA three-way junction and binding of ribosomal protein S15. RNA. 1998 Aug;4(8):984-97. doi: 10.1017/s1355838298980426. PubMed PMID: 9701289; PubMed Central PMCID: PMC1369675.
Rook MS, Treiber DK, Williamson JR. Fast folding mutants of the Tetrahymena group I ribozyme reveal a rugged folding energy landscape. J Mol Biol. 1998 Aug 28;281(4):609-20. doi: 10.1006/jmbi.1998.1960. PubMed PMID: 9710534.
Zamore PD, Bartel DP, Lehmann R, Williamson JR. The PUMILIO-RNA interaction: a single RNA-binding domain monomer recognizes a bipartite target sequence. Biochemistry. 1999 Jan 12;38(2):596-604. doi: 10.1021/bi982264s. PubMed PMID: 9888799.
Treiber DK, Williamson JR. Exposing the kinetic traps in RNA folding. Curr Opin Struct Biol. 1999 Jun;9(3):339-45. doi: 10.1016/S0959-440X(99)80045-1. Review. PubMed PMID: 10361090.
Ha T, Zhuang X, Kim HD, Orr JW, Williamson JR, Chu S. Ligand-induced conformational changes observed in single RNA molecules. Proc Natl Acad Sci U S A. 1999 Aug 3;96(16):9077-82. doi: 10.1073/pnas.96.16.9077. PubMed PMID: 10430898; PubMed Central PMCID: PMC17735.
Mao H, Williamson JR. Local folding coupled to RNA binding in the yeast ribosomal protein L30. J Mol Biol. 1999 Sep 17;292(2):345-59. doi: 10.1006/jmbi.1999.3044. PubMed PMID: 10493880.
Mao H, Williamson JR. Assignment of the L30-mRNA complex using selective isotopic labeling and RNA mutants. Nucleic Acids Res. 1999 Oct 15;27(20):4059-70. doi: 10.1093/nar/27.20.4059. PubMed PMID: 10497271; PubMed Central PMCID: PMC148674.
Rook MS, Treiber DK, Williamson JR. An optimal Mg(2+) concentration for kinetic folding of the tetrahymena ribozyme. Proc Natl Acad Sci U S A. 1999 Oct 26;96(22):12471-6. doi: 10.1073/pnas.96.22.12471. PubMed PMID: 10535946; PubMed Central PMCID: PMC22953.
Mao H, White SA, Williamson JR. A novel loop-loop recognition motif in the yeast ribosomal protein L30 autoregulatory RNA complex. Nat Struct Biol. 1999 Dec;6(12):1139-47. doi: 10.1038/70081. PubMed PMID: 10581556.
Treiber DK, Williamson JR. Kinetic oligonucleotide hybridization for monitoring kinetic folding of large RNAs. Methods Enzymol. 2000;317:330-53. doi: 10.1016/s0076-6879(00)17023-5. PubMed PMID: 10829289.
Scott LG, Tolbert TJ, Williamson JR. Preparation of specifically 2H- and 13C-labeled ribonucleotides. Methods Enzymol. 2000;317:18-38. doi: 10.1016/s0076-6879(00)17004-1. PubMed PMID: 10829270.
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