My Bibliography

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Qu S, Nelson HM, Liu X, Semler E, Michell D, Massick C, Franklin JL, Karijolich JJ, Weaver AM, Coffey RJ, Liu Q, Vickers KC, Patton JG. 5-Fluorouracil treatment represses pseudouridine-containing small export into extracellular vesicles. bioRxiv. Forthcoming.

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Nelson HM, Qu S, Chapman S, Luthcke N, Schuster S, Turnbull L, Shameer M, Guy L, Corn K, Vickers KC, Liu Q, Franklin JL, Weaver AM, Rafat M, Coffey RJ, Patton JG. miR-100 and miR-125b Contribute to Enhanced Growth and Invasiveness. bioRxiv. Forthcoming.

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Konar GJ, Flickinger Z, Sharma S, Vallone KT, Lyon CE Jr, Doshier C, Lingan A, Lyon W, Patton JG. Damage-Induced Senescent Immune Cells Regulate Regeneration of the Zebrafish Retina. Aging Biol. 2024;2. doi: 10.59368/agingbio.20240021. Epub 2024 Feb 13. PubMed PMID: 39156966; PubMed Central PMCID: PMC11328971.

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Davies JP, Sivadas A, Keller KR, Roman BK, Wojcikiewicz RJH, Plate L. Expression of SARS-CoV-2 Nonstructural Proteins 3 and 4 Can Tune the Unfolded Protein Response in Cell Culture. J Proteome Res. 2024 Jan 5;23(1):356-367. doi: 10.1021/acs.jproteome.3c00600. Epub 2023 Dec 1. PubMed PMID: 38038604; PubMed Central PMCID: PMC11063930.

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Roetman JJ, Erwin MM, Rudloff MW, Favret NR, Detrés Román CR, Apostolova MKI, Murray KA, Lee TF, Lee YA, Philip M. Tumor-Reactive CD8+ T Cells Enter a TCF1+PD-1- Dysfunctional State. Cancer Immunol Res. 2023 Dec 1;11(12):1630-1641. doi: 10.1158/2326-6066.CIR-22-0939. PubMed PMID: 37844197; PubMed Central PMCID: PMC10841346.

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Spencer ZT, Ng VH, Benchabane H, Siddiqui GS, Duwadi D, Maines B, Bryant JM, Schwarzkopf A, Yuan K, Kassel SN, Mishra A, Pimentel A, Lebensohn AM, Rohatgi R, Gerber SA, Robbins DJ, Lee E, Ahmed Y. The USP46 deubiquitylase complex increases Wingless/Wnt signaling strength by stabilizing Arrow/LRP6. Nat Commun. 2023 Oct 5;14(1):6174. doi: 10.1038/s41467-023-41843-0. PubMed PMID: 37798281; PubMed Central PMCID: PMC10556106.

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Chen D, Varanasi SK, Hara T, Traina K, Sun M, McDonald B, Farsakoglu Y, Clanton J, Xu S, Garcia-Rivera L, Mann TH, Du V, Chung HK, Xu Z, Tripple V, Casillas E, Ma S, O'Connor C, Yang Q, Zheng Y, Hunter T, Lemke G, Kaech SM. CTLA-4 blockade induces a microglia-Th1 cell partnership that stimulates microglia phagocytosis and anti-tumor function in glioblastoma. Immunity. 2023 Sep 12;56(9):2086-2104.e8. doi: 10.1016/j.immuni.2023.07.015. Epub 2023 Aug 11. PubMed PMID: 37572655.

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Gonzalez DI, Ynalvez RA. Comparison of the effects of nitrogen-, sulfur- and combined nitrogen- and sulfur-deprivations on cell growth, lipid bodies and gene expressions in Chlamydomonas reinhardtii cc5373-sta6. BMC Biotechnol. 2023 Sep 8;23(1):35. doi: 10.1186/s12896-023-00808-3. PubMed PMID: 37684579; PubMed Central PMCID: PMC10492388.

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Rudloff MW, Zumbo P, Favret NR, Roetman JJ, Detrés Román CR, Erwin MM, Murray KA, Jonnakuti ST, Dündar F, Betel D, Philip M. Hallmarks of CD8(+) T cell dysfunction are established within hours of tumor antigen encounter before cell division. Nat Immunol. 2023 Sep;24(9):1527-1539. doi: 10.1038/s41590-023-01578-y. Epub 2023 Aug 3. PubMed PMID: 37537361; PubMed Central PMCID: PMC10878719.

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Sprenkle NT, Winn NC, Bunn KE, Zhao Y, Park DJ, Giese BG, Karijolich JJ, Ansel KM, Serezani CH, Hasty AH, Pua HH. The miR-23-27-24 clusters drive lipid-associated macrophage proliferation in obese adipose tissue. Cell Rep. 2023 Aug 29;42(8):112928. doi: 10.1016/j.celrep.2023.112928. Epub 2023 Aug 4. PubMed PMID: 37542720; PubMed Central PMCID: PMC10712211.

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Ngo K, Gittens TH, Gonzalez DI, Hatmaker EA, Plotkin S, Engle M, Friedman GA, Goldin M, Hoerr RE, Eichman BF, Rokas A, Benton ML, Friedman KL. A comprehensive map of hotspots of de novo telomere addition in Saccharomyces cerevisiae. Genetics. 2023 May 26;224(2). doi: 10.1093/genetics/iyad076. PubMed PMID: 37119805; PubMed Central PMCID: PMC10474931.

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Rossi AM, Bohnert KA, Gould KL. The fission yeast cytokinetic ring component Fic1 promotes septum formation. Biol Open. 2023 May 15;12(5). doi: 10.1242/bio.059957. Epub 2023 May 9. PubMed PMID: 37158439; PubMed Central PMCID: PMC10184318.

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Kuhlmann-Hogan A, Cordes T, Xu Z, Traina KA, Robles-Oteíza C, Ayeni D, Kwong EM, Levy SR, Nobari M, Cheng GZ, Shaw R, Leibel SL, Metallo CM, Politi K, Kaech SM. EGFR (+) lung adenocarcinomas coopt alveolar macrophage metabolism and function to support EGFR signaling and growth. bioRxiv. 2023 Apr 17;. doi: 10.1101/2023.04.15.536974. PubMed PMID: 37131637; PubMed Central PMCID: PMC10153136.

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Ngo K, Gittens TH, Gonzalez DI, Hatmaker EA, Plotkin S, Engle M, Friedman GA, Goldin M, Hoerr RE, Eichman BF, Rokas A, Benton ML, Friedman KL. A comprehensive map of hotspots of de novo telomere addition in Saccharomyces cerevisiae. bioRxiv. 2023 Mar 23;. doi: 10.1101/2023.03.20.533556. PubMed PMID: 36993206; PubMed Central PMCID: PMC10055226.

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Rossi AM, Bohnert KA, Gould KL. The fission yeast cytokinetic ring component Fic1 promotes septum formation. bioRxiv. 2023 Mar 14;. doi: 10.1101/2023.03.13.532462. PubMed PMID: 36993237; PubMed Central PMCID: PMC10054984.

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Stokes JV, Levin ML, Cross CE, Ross AL, Snellgrove AN, Willeford BV, Alugubelly N, Varela-Stokes AS. Evaluating the Clinical and Immune Responses to Spotted Fever Rickettsioses in the Guinea Pig-Tick-Rickettsia System. Curr Protoc. 2022 Nov;2(11):e584. doi: 10.1002/cpz1.584. PubMed PMID: 36383032; PubMed Central PMCID: PMC9828190.

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Du G, Jiang J, Henning NJ, Safaee N, Koide E, Nowak RP, Donovan KA, Yoon H, You I, Yue H, Eleuteri NA, He Z, Li Z, Huang HT, Che J, Nabet B, Zhang T, Fischer ES, Gray NS. Exploring the target scope of KEAP1 E3 ligase-based PROTACs. Cell Chem Biol. 2022 Oct 20;29(10):1470-1481.e31. doi: 10.1016/j.chembiol.2022.08.003. Epub 2022 Sep 6. PubMed PMID: 36070758; PubMed Central PMCID: PMC9588736.

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Russell CM, Schaefer KG, Dixson A, Gray ALH, Pyron RJ, Alves DS, Moore N, Conley EA, Schuck RJ, White TA, Do TD, King GM, Barrera FN. The Candida albicans virulence factor candidalysin polymerizes in solution to form membrane pores and damage epithelial cells. Elife. 2022 Sep 29;11. doi: 10.7554/eLife.75490. PubMed PMID: 36173096; PubMed Central PMCID: PMC9522247.

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Snider CE, Bhattacharjee R, Igarashi MG, Gould KL. Fission yeast paxillin contains two Cdc15 binding motifs for robust recruitment to the cytokinetic ring. Mol Biol Cell. 2022 Apr 1;33(4):br4. doi: 10.1091/mbc.E21-11-0560. Epub 2022 Feb 2. PubMed PMID: 35108037; PubMed Central PMCID: PMC9250355.

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Liu H, Li D, Sun L, Qin H, Fan A, Meng L, Graves-Deal R, Glass SE, Franklin JL, Liu Q, Wang J, Yeatman TJ, Guo H, Zong H, Jin S, Chen Z, Deng T, Fang Y, Li C, Karijolich J, Patton JG, Wang X, Nie Y, Fan D, Coffey RJ, Zhao X, Lu Y. Interaction of lncRNA MIR100HG with hnRNPA2B1 facilitates m(6)A-dependent stabilization of TCF7L2 mRNA and colorectal cancer progression. Mol Cancer. 2022 Mar 12;21(1):74. doi: 10.1186/s12943-022-01555-3. PubMed PMID: 35279145; PubMed Central PMCID: PMC8917698.

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Berumen Sánchez G, Bunn KE, Pua HH, Rafat M. Extracellular vesicles: mediators of intercellular communication in tissue injury and disease. Cell Commun Signal. 2021 Oct 16;19(1):104. doi: 10.1186/s12964-021-00787-y. Review. PubMed PMID: 34656117; PubMed Central PMCID: PMC8520651.

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Liu J, Willems HME, Sansevere EA, Allert S, Barker KS, Lowes DJ, Dixson AC, Xu Z, Miao J, DeJarnette C, Tournu H, Palmer GE, Richardson JP, Barrera FN, Hube B, Naglik JR, Peters BM. A variant ECE1 allele contributes to reduced pathogenicity of Candida albicans during vulvovaginal candidiasis. PLoS Pathog. 2021 Sep;17(9):e1009884. doi: 10.1371/journal.ppat.1009884. eCollection 2021 Sep. PubMed PMID: 34506615; PubMed Central PMCID: PMC8432879.

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Willet AH, Igarashi MG, Chen JS, Bhattacharjee R, Ren L, Cullati SN, Elmore ZC, Roberts-Galbraith RH, Johnson AE, Beckley JR, Gould KL. Phosphorylation in the intrinsically disordered region of F-BAR protein Imp2 regulates its contractile ring recruitment. J Cell Sci. 2021 Aug 15;134(16). doi: 10.1242/jcs.258645. Epub 2021 Aug 17. PubMed PMID: 34402513; PubMed Central PMCID: PMC8435286.

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Snider CE, Wan Mohamad Noor WNI, Nguyen NTH, Gould KL, Suetsugu S. The state of F-BAR domains as membrane-bound oligomeric platforms. Trends Cell Biol. 2021 Aug;31(8):644-655. doi: 10.1016/j.tcb.2021.03.013. Epub 2021 Apr 20. Review. PubMed PMID: 33888395; PubMed Central PMCID: PMC8286294.

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Liu Q, Gaeta IM, Zhao M, Deng R, Jha A, Millis BA, Mahadevan-Jansen A, Tyska MJ, Huo Y. ASIST: Annotation-free synthetic instance segmentation and tracking by adversarial simulations. Comput Biol Med. 2021 Jul;134:104501. doi: 10.1016/j.compbiomed.2021.104501. Epub 2021 May 31. PubMed PMID: 34107436; PubMed Central PMCID: PMC8263511.

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Almasy KM, Davies JP, Plate L. Comparative Host Interactomes of the SARS-CoV-2 Nonstructural Protein 3 and Human Coronavirus Homologs. Mol Cell Proteomics. 2021;20:100120. doi: 10.1016/j.mcpro.2021.100120. Epub 2021 Jun 27. PubMed PMID: 34186245; PubMed Central PMCID: PMC8236078.

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Hoerr RE, Ngo K, Friedman KL. When the Ends Justify the Means: Regulation of Telomere Addition at Double-Strand Breaks in Yeast. Front Cell Dev Biol. 2021;9:655377. doi: 10.3389/fcell.2021.655377. eCollection 2021. Review. PubMed PMID: 33816507; PubMed Central PMCID: PMC8012806.

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Kent MR, Kara N, Patton JG. Inhibition of GABA(A)-ρ receptors induces retina regeneration in zebrafish. Neural Regen Res. 2021 Feb;16(2):367-374. doi: 10.4103/1673-5374.286972. PubMed PMID: 32859800; PubMed Central PMCID: PMC7896201.

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Almasy KM, Davies JP, Lisy SM, Tirgar R, Tran SC, Plate L. Small-molecule endoplasmic reticulum proteostasis regulator acts as a broad-spectrum inhibitor of dengue and Zika virus infections. Proc Natl Acad Sci U S A. 2021 Jan 19;118(3). doi: 10.1073/pnas.2012209118. PubMed PMID: 33441483; PubMed Central PMCID: PMC7826409.

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Snider CE, Chandra M, McDonald NA, Willet AH, Collier SE, Ohi MD, Jackson LP, Gould KL. Opposite Surfaces of the Cdc15 F-BAR Domain Create a Membrane Platform That Coordinates Cytoskeletal and Signaling Components for Cytokinesis. Cell Rep. 2020 Dec 22;33(12):108526. doi: 10.1016/j.celrep.2020.108526. PubMed PMID: 33357436; PubMed Central PMCID: PMC7775634.

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Davies JP, Almasy KM, McDonald EF, Plate L. Comparative Multiplexed Interactomics of SARS-CoV-2 and Homologous Coronavirus Nonstructural Proteins Identifies Unique and Shared Host-Cell Dependencies. ACS Infect Dis. 2020 Dec 11;6(12):3174-3189. doi: 10.1021/acsinfecdis.0c00500. Epub 2020 Dec 2. PubMed PMID: 33263384; PubMed Central PMCID: PMC7724760.

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Snider CE, Willet AH, Brown HT, Chen JS, Evers JM, Gould KL. Fission yeast Opy1 is an endogenous PI(4,5)P(2) sensor that binds to the phosphatidylinositol 4-phosphate 5-kinase Its3. J Cell Sci. 2020 Dec 3;133(23). doi: 10.1242/jcs.247973. PubMed PMID: 33172987; PubMed Central PMCID: PMC7725598.

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Didiano D, Abner JJ, Hinger SA, Flickinger Z, Kent M, Clement MA, Balaiya S, Liu Q, Dai X, Levine EM, Patton JG. Induction of a proliferative response in the zebrafish retina by injection of extracellular vesicles. Exp Eye Res. 2020 Nov;200:108254. doi: 10.1016/j.exer.2020.108254. Epub 2020 Sep 19. PubMed PMID: 32961174; PubMed Central PMCID: PMC7655690.

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Hinger SA, Abner JJ, Franklin JL, Jeppesen DK, Coffey RJ, Patton JG. Rab13 regulates sEV secretion in mutant KRAS colorectal cancer cells. Sci Rep. 2020 Sep 25;10(1):15804. doi: 10.1038/s41598-020-72503-8. PubMed PMID: 32978434; PubMed Central PMCID: PMC7519665.

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Bohnert KA, Rossi AM, Jin QW, Chen JS, Gould KL. Phosphoregulation of the cytokinetic protein Fic1 contributes to fission yeast growth polarity establishment. J Cell Sci. 2020 Sep 17;133(18). doi: 10.1242/jcs.244392. PubMed PMID: 32878942; PubMed Central PMCID: PMC7520453.

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Mayhew V, Omokehinde T, Johnson RW. Tumor dormancy in bone. Cancer Rep (Hoboken). 2020 Feb;3(1):e1156. doi: 10.1002/cnr2.1156. Epub 2019 Jan 29. Review. PubMed PMID: 32632400; PubMed Central PMCID: PMC7337256.

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Weaver AM, Patton JG. Argonautes in Extracellular Vesicles: Artifact or Selected Cargo?. Cancer Res. 2020 Feb 1;80(3):379-381. doi: 10.1158/0008-5472.CAN-19-2782. Epub 2019 Nov 29. PubMed PMID: 31784424; PubMed Central PMCID: PMC7002258.

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Unlu G, Qi X, Gamazon ER, Melville DB, Patel N, Rushing AR, Hashem M, Al-Faifi A, Chen R, Li B, Cox NJ, Alkuraya FS, Knapik EW. Phenome-based approach identifies RIC1-linked Mendelian syndrome through zebrafish models, biobank associations and clinical studies. Nat Med. 2020 Jan;26(1):98-109. doi: 10.1038/s41591-019-0705-y. Epub 2020 Jan 13. PubMed PMID: 31932796; PubMed Central PMCID: PMC7147997.

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Engevik AC, Kaji I, Postema MM, Faust JJ, Meyer AR, Williams JA, Fitz GN, Tyska MJ, Wilson JM, Goldenring JR. Loss of myosin Vb promotes apical bulk endocytosis in neonatal enterocytes. J Cell Biol. 2019 Nov 4;218(11):3647-3662. doi: 10.1083/jcb.201902063. Epub 2019 Sep 27. PubMed PMID: 31562230; PubMed Central PMCID: PMC6829668.

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Mangione MC, Snider CE, Gould KL. The intrinsically disordered region of the cytokinetic F-BAR protein Cdc15 performs a unique essential function in maintenance of cytokinetic ring integrity. Mol Biol Cell. 2019 Oct 15;30(22):2790-2801. doi: 10.1091/mbc.E19-06-0314. Epub 2019 Sep 11. PubMed PMID: 31509478; PubMed Central PMCID: PMC6789166.

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Meenderink LM, Gaeta IM, Postema MM, Cencer CS, Chinowsky CR, Krystofiak ES, Millis BA, Tyska MJ. Actin Dynamics Drive Microvillar Motility and Clustering during Brush Border Assembly. Dev Cell. 2019 Sep 9;50(5):545-556.e4. doi: 10.1016/j.devcel.2019.07.008. Epub 2019 Aug 1. PubMed PMID: 31378589; PubMed Central PMCID: PMC6736749.

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Robinson CM, Snyder KT, Creanza N. Correlated evolution between repertoire size and song plasticity predicts that sexual selection on song promotes open-ended learning. Elife. 2019 Sep 3;8. doi: 10.7554/eLife.44454. PubMed PMID: 31478482; PubMed Central PMCID: PMC6721395.

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Strothman C, Farmer V, Arpağ G, Rodgers N, Podolski M, Norris S, Ohi R, Zanic M. Microtubule minus-end stability is dictated by the tubulin off-rate. J Cell Biol. 2019 Sep 2;218(9):2841-2853. doi: 10.1083/jcb.201905019. Epub 2019 Aug 16. PubMed PMID: 31420452; PubMed Central PMCID: PMC6719460.

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Kara N, Kent MR, Didiano D, Rajaram K, Zhao A, Summerbell ER, Patton JG. The miR-216a-Dot1l Regulatory Axis Is Necessary and Sufficient for Müller Glia Reprogramming during Retina Regeneration. Cell Rep. 2019 Aug 20;28(8):2037-2047.e4. doi: 10.1016/j.celrep.2019.07.061. PubMed PMID: 31433981; PubMed Central PMCID: PMC6750267.

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Best JT, Xu P, Graham TR. Phospholipid flippases in membrane remodeling and transport carrier biogenesis. Curr Opin Cell Biol. 2019 Aug;59:8-15. doi: 10.1016/j.ceb.2019.02.004. Epub 2019 Mar 18. Review. PubMed PMID: 30897446; PubMed Central PMCID: PMC6726550.

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Robinson CM, Creanza N. Species-level repertoire size predicts a correlation between individual song elaboration and reproductive success. Ecol Evol. 2019 Jul;9(14):8362-8377. doi: 10.1002/ece3.5418. eCollection 2019 Jul. PubMed PMID: 31380095; PubMed Central PMCID: PMC6662282.

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Meyer AR, Engevik AC, Willet SG, Williams JA, Zou Y, Massion PP, Mills JC, Choi E, Goldenring JR. Cystine/Glutamate Antiporter (xCT) Is Required for Chief Cell Plasticity After Gastric Injury. Cell Mol Gastroenterol Hepatol. 2019;8(3):379-405. doi: 10.1016/j.jcmgh.2019.04.015. Epub 2019 May 6. PubMed PMID: 31071489; PubMed Central PMCID: PMC6713894.

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Das S, Ansel KM, Bitzer M, Breakefield XO, Charest A, Galas DJ, Gerstein MB, Gupta M, Milosavljevic A, McManus MT, Patel T, Raffai RL, Rozowsky J, Roth ME, Saugstad JA, Van Keuren-Jensen K, Weaver AM, Laurent LC. The Extracellular RNA Communication Consortium: Establishing Foundational Knowledge and Technologies for Extracellular RNA Research. Cell. 2019 Apr 4;177(2):231-242. doi: 10.1016/j.cell.2019.03.023. Review. PubMed PMID: 30951667; PubMed Central PMCID: PMC6601620.

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Aho ER, Wang J, Gogliotti RD, Howard GC, Phan J, Acharya P, Macdonald JD, Cheng K, Lorey SL, Lu B, Wenzel S, Foshage AM, Alvarado J, Wang F, Shaw JG, Zhao B, Weissmiller AM, Thomas LR, Vakoc CR, Hall MD, Hiebert SW, Liu Q, Stauffer SR, Fesik SW, Tansey WP. Displacement of WDR5 from Chromatin by a WIN Site Inhibitor with Picomolar Affinity. Cell Rep. 2019 Mar 12;26(11):2916-2928.e13. doi: 10.1016/j.celrep.2019.02.047. PubMed PMID: 30865883; PubMed Central PMCID: PMC6448596.

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Jimenez L, Yu H, McKenzie AJ, Franklin JL, Patton JG, Liu Q, Weaver AM. Quantitative Proteomic Analysis of Small and Large Extracellular Vesicles (EVs) Reveals Enrichment of Adhesion Proteins in Small EVs. J Proteome Res. 2019 Mar 1;18(3):947-959. doi: 10.1021/acs.jproteome.8b00647. Epub 2019 Jan 23. PubMed PMID: 30608700; PubMed Central PMCID: PMC6411421.