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Steele JF, Kerfeld CA. The Shells of Bacterial Microcompartments. Encyclopedia of Biological Chemistry, 3rd ed.. Forthcoming.
Nayfach S, Roux S, Seshadri R, Udwary D, Varghese N, Schulz F, Wu D, Paez-Espino D, Chen IM, Huntemann M, Palaniappan K, Ladau J, Mukherjee S, Reddy TBK, Nielsen T, Kirton E, Faria JP, Edirisinghe JN, Henry CS, Jungbluth SP, Chivian D, Dehal P, Wood-Charlson EM, Arkin AP, Tringe SG, Visel A, Woyke T, Mouncey NJ, Ivanova NN, Kyrpides NC, Eloe-Fadrosh EA. A genomic catalog of Earth's microbiomes. Nat Biotechnol. 2020 Nov 9;. doi: 10.1038/s41587-020-0718-6. [Epub ahead of print] PubMed PMID: 33169036.
Kerfeld CA, Sutter M. Engineered bacterial microcompartments: apps for programming metabolism. Curr Opin Biotechnol. 2020 Oct;65:225-232. doi: 10.1016/j.copbio.2020.05.001. Epub 2020 Jun 15. Review. PubMed PMID: 32554213; PubMed Central PMCID: PMC7719235.
Dominguez-Martin MA, Hammel M, Gupta S, Lechno-Yossef S, Sutter M, Rosenberg DJ, Chen Y, Petzold CJ, Ralston CY, Polívka T, Kerfeld CA. Structural analysis of a new carotenoid-binding protein: the C-terminal domain homolog of the OCP. Sci Rep. 2020 Sep 23;10(1):15564. doi: 10.1038/s41598-020-72383-y. PubMed PMID: 32968135; PubMed Central PMCID: PMC7512017.
Scott KM, Harmer TL, Gemmell BJ, Kramer AM, Sutter M, Kerfeld CA, Barber KS, Bari S, Boling JW, Campbell CP, Gallard-Gongora JF, Jackson JK, Lobos A, Mounger JM, Radulovic PW, Sanson JM, Schmid S, Takieddine C, Warlick KF, Whittaker R. Ubiquity and functional uniformity in CO2 concentrating mechanisms in multiple phyla of Bacteria is suggested by a diversity and prevalence of genes encoding candidate dissolved inorganic carbon transporters. FEMS Microbiol Lett. 2020 Jul 1;367(13). doi: 10.1093/femsle/fnaa106. PubMed PMID: 32589217.
Khan T, Dominguez-Martin MA, Šímová I, Fuciman M, Kerfeld CA, Polívka T. Excited-State Properties of Canthaxanthin in Cyanobacterial Carotenoid-Binding Proteins HCP2 and HCP3. J Phys Chem B. 2020 Jun 18;124(24):4896-4905. doi: 10.1021/acs.jpcb.0c03137. Epub 2020 Jun 3. PubMed PMID: 32437153.
Rohnke BA, Kerfeld CA, Montgomery BL. Binding Options for the Small Subunit-Like Domain of Cyanobacteria to Rubisco. Front Microbiol. 2020;11:187. doi: 10.3389/fmicb.2020.00187. eCollection 2020. PubMed PMID: 32180764; PubMed Central PMCID: PMC7059596.
Kuznetsova V, Dominguez-Martin MA, Bao H, Gupta S, Sutter M, Kloz M, Rebarz M, Přeček M, Chen Y, Petzold CJ, Ralston CY, Kerfeld CA, Polívka T. Comparative ultrafast spectroscopy and structural analysis of OCP1 and OCP2 from Tolypothrix. Biochim Biophys Acta Bioenerg. 2020 Feb 1;1861(2):148120. doi: 10.1016/j.bbabio.2019.148120. Epub 2019 Nov 14. PubMed PMID: 31734194; PubMed Central PMCID: PMC6943196.
Huang J, Ferlez BH, Young EJ, Kerfeld CA, Kramer DM, Ducat DC. Functionalization of Bacterial Microcompartment Shell Proteins With Covalently Attached Heme. Front Bioeng Biotechnol. 2019;7:432. doi: 10.3389/fbioe.2019.00432. eCollection 2019. PubMed PMID: 31993414; PubMed Central PMCID: PMC6962350.
Young EJ, Sakkos JK, Huang J, Wright JK, Kachel B, Fuentes-Cabrera M, Kerfeld CA, Ducat DC. Visualizing in Vivo Dynamics of Designer Nanoscaffolds. Nano Lett. 2020 Jan 8;20(1):208-217. doi: 10.1021/acs.nanolett.9b03651. Epub 2019 Dec 3. PubMed PMID: 31747755.
Lechno-Yossef S, Rohnke BA, Belza ACO, Melnicki MR, Montgomery BL, Kerfeld CA. Cyanobacterial carboxysomes contain an unique rubisco-activase-like protein. New Phytol. 2020 Jan;225(2):793-806. doi: 10.1111/nph.16195. Epub 2019 Oct 25. PubMed PMID: 31518434.
Sutter M, Laughlin TG, Sloan NB, Serwas D, Davies KM, Kerfeld CA. Structure of a Synthetic β-Carboxysome Shell. Plant Physiol. 2019 Nov;181(3):1050-1058. doi: 10.1104/pp.19.00885. Epub 2019 Sep 9. PubMed PMID: 31501298; PubMed Central PMCID: PMC6836842.
Kirst H, Kerfeld CA. Bacterial microcompartments: catalysis-enhancing metabolic modules for next generation metabolic and biomedical engineering. BMC Biol. 2019 Oct 10;17(1):79. doi: 10.1186/s12915-019-0691-z. Review. PubMed PMID: 31601225; PubMed Central PMCID: PMC6787980.
Dominguez-Martin MA, Kerfeld CA. Engineering the orange carotenoid protein for applications in synthetic biology. Curr Opin Struct Biol. 2019 Aug;57:110-117. doi: 10.1016/j.sbi.2019.01.023. Epub 2019 Mar 20. Review. PubMed PMID: 30901642.
Ferlez B, Sutter M, Kerfeld CA. A designed bacterial microcompartment shell with tunable composition and precision cargo loading. Metab Eng. 2019 Jul;54:286-291. doi: 10.1016/j.ymben.2019.04.011. Epub 2019 May 7. PubMed PMID: 31075444; PubMed Central PMCID: PMC6884132.
Gupta S, Sutter M, Remesh SG, Dominguez-Martin MA, Bao H, Feng XA, Chan LG, Petzold CJ, Kerfeld CA, Ralston CY. X-ray radiolytic labeling reveals the molecular basis of orange carotenoid protein photoprotection and its interactions with fluorescence recovery protein. J Biol Chem. 2019 May 31;294(22):8848-8860. doi: 10.1074/jbc.RA119.007592. Epub 2019 Apr 12. PubMed PMID: 30979724; PubMed Central PMCID: PMC6552439.
Greber BJ, Sutter M, Kerfeld CA. The Plasticity of Molecular Interactions Governs Bacterial Microcompartment Shell Assembly. Structure. 2019 May 7;27(5):749-763.e4. doi: 10.1016/j.str.2019.01.017. Epub 2019 Mar 1. PubMed PMID: 30833088; PubMed Central PMCID: PMC6506404.
Dominguez-Martin MA, Polívka T, Sutter M, Ferlez B, Lechno-Yossef S, Montgomery BL, Kerfeld CA. Structural and spectroscopic characterization of HCP2. Biochim Biophys Acta Bioenerg. 2019 May 1;1860(5):414-424. doi: 10.1016/j.bbabio.2019.03.004. Epub 2019 Mar 15. PubMed PMID: 30880081.
Sutter M, McGuire S, Ferlez B, Kerfeld CA. Structural Characterization of a Synthetic Tandem-Domain Bacterial Microcompartment Shell Protein Capable of Forming Icosahedral Shell Assemblies. ACS Synth Biol. 2019 Apr 19;8(4):668-674. doi: 10.1021/acssynbio.9b00011. Epub 2019 Mar 27. PubMed PMID: 30901520; PubMed Central PMCID: PMC6884138.
Ferlez B, Sutter M, Kerfeld CA. Glycyl Radical Enzyme-Associated Microcompartments: Redox-Replete Bacterial Organelles. mBio. 2019 Jan 8;10(1). doi: 10.1128/mBio.02327-18. Review. PubMed PMID: 30622187; PubMed Central PMCID: PMC6325248.
Sommer M, Sutter M, Gupta S, Kirst H, Turmo A, Lechno-Yossef S, Burton RL, Saechao C, Sloan NB, Cheng X, Chan LG, Petzold CJ, Fuentes-Cabrera M, Ralston CY, Kerfeld CA. Heterohexamers Formed by CcmK3 and CcmK4 Increase the Complexity of Beta Carboxysome Shells. Plant Physiol. 2019 Jan;179(1):156-167. doi: 10.1104/pp.18.01190. Epub 2018 Nov 2. PubMed PMID: 30389783; PubMed Central PMCID: PMC6324227.
Hagen AR, Plegaria JS, Sloan N, Ferlez B, Aussignargues C, Burton R, Kerfeld CA. In Vitro Assembly of Diverse Bacterial Microcompartment Shell Architectures. Nano Lett. 2018 Nov 14;18(11):7030-7037. doi: 10.1021/acs.nanolett.8b02991. Epub 2018 Oct 31. PubMed PMID: 30346795; PubMed Central PMCID: PMC6309364.
Pande K, Donatelli JJ, Malmerberg E, Foucar L, Poon BK, Sutter M, Botha S, Basu S, Bruce Doak R, Dörner K, Epp SW, Englert L, Fromme R, Hartmann E, Hartmann R, Hauser G, Hattne J, Hosseinizadeh A, Kassemeyer S, Lomb L, Montero SFC, Menzel A, Rolles D, Rudenko A, Seibert MM, Sierra RG, Schwander P, Ourmazd A, Fromme P, Sauter NK, Bogan M, Bozek J, Bostedt C, Schlichting I, Kerfeld CA, Zwart PH. Free-electron laser data for multiple-particle fluctuation scattering analysis. Sci Data. 2018 Oct 2;5:180201. doi: 10.1038/sdata.2018.201. PubMed PMID: 30277481; PubMed Central PMCID: PMC6167951.
Scott KM, Williams J, Porter CMB, Russel S, Harmer TL, Paul JH, Antonen KM, Bridges MK, Camper GJ, Campla CK, Casella LG, Chase E, Conrad JW, Cruz MC, Dunlap DS, Duran L, Fahsbender EM, Goldsmith DB, Keeley RF, Kondoff MR, Kussy BI, Lane MK, Lawler S, Leigh BA, Lewis C, Lostal LM, Marking D, Mancera PA, McClenthan EC, McIntyre EA, Mine JA, Modi S, Moore BD, Morgan WA, Nelson KM, Nguyen KN, Ogburn N, Parrino DG, Pedapudi AD, Pelham RP, Preece AM, Rampersad EA, Richardson JC, Rodgers CM, Schaffer BL, Sheridan NE, Solone MR, Staley ZR, Tabuchi M, Waide RJ, Wanjugi PW, Young S, Clum A, Daum C, Huntemann M, Ivanova N, Kyrpides N, Mikhailova N, Palaniappan K, Pillay M, Reddy TBK, Shapiro N, Stamatis D, Varghese N, Woyke T, Boden R, Freyermuth SK, Kerfeld CA. Genomes of ubiquitous marine and hypersaline Hydrogenovibrio, Thiomicrorhabdus and Thiomicrospira spp. encode a diversity of mechanisms to sustain chemolithoautotrophy in heterogeneous environments. Environ Microbiol. 2018 Aug;20(8):2686-2708. doi: 10.1111/1462-2920.14090. Epub 2018 Apr 6. PubMed PMID: 29521452.
Hagen A, Sutter M, Sloan N, Kerfeld CA. Programmed loading and rapid purification of engineered bacterial microcompartment shells. Nat Commun. 2018 Jul 23;9(1):2881. doi: 10.1038/s41467-018-05162-z. PubMed PMID: 30038362; PubMed Central PMCID: PMC6056538.
Feroz H, Ferlez B, Lefoulon C, Ren T, Baker CS, Gajewski JP, Lugar DJ, Gaudana SB, Butler PJ, Hühn J, Lamping M, Parak WJ, Hibberd JM, Kerfeld CA, Smirnoff N, Blatt MR, Golbeck JH, Kumar M. Light-Driven Chloride Transport Kinetics of Halorhodopsin. Biophys J. 2018 Jul 17;115(2):353-360. doi: 10.1016/j.bpj.2018.06.009. PubMed PMID: 30021110; PubMed Central PMCID: PMC6051019.
Hackenberg C, Hakanpää J, Cai F, Antonyuk S, Eigner C, Meissner S, Laitaoja M, Jänis J, Kerfeld CA, Dittmann E, Lamzin VS. Structural and functional insights into the unique CBS-CP12 fusion protein family in cyanobacteria. Proc Natl Acad Sci U S A. 2018 Jul 3;115(27):7141-7146. doi: 10.1073/pnas.1806668115. Epub 2018 Jun 18. PubMed PMID: 29915055; PubMed Central PMCID: PMC6142219.
Plegaria JS, Kerfeld CA. Engineering nanoreactors using bacterial microcompartment architectures. Curr Opin Biotechnol. 2018 Jun;51:1-7. doi: 10.1016/j.copbio.2017.09.005. Epub 2017 Oct 13. Review. PubMed PMID: 29035760; PubMed Central PMCID: PMC5899066.
Kerfeld CA, Aussignargues C, Zarzycki J, Cai F, Sutter M. Bacterial microcompartments. Nat Rev Microbiol. 2018 May;16(5):277-290. doi: 10.1038/nrmicro.2018.10. Epub 2018 Mar 5. Review. PubMed PMID: 29503457; PubMed Central PMCID: PMC6022854.
Gurchiek JK, Bao H, Domínguez-Martín MA, McGovern SE, Marquardt CE, Roscioli JD, Ghosh S, Kerfeld CA, Beck WF. Fluorescence and Excited-State Conformational Dynamics of the Orange Carotenoid Protein. J Phys Chem B. 2018 Feb 15;122(6):1792-1800. doi: 10.1021/acs.jpcb.7b09435. Epub 2018 Feb 2. PubMed PMID: 29347821.
Plegaria JS, Sutter M, Ferlez B, Aussignargues C, Niklas J, Poluektov OG, Fromwiller C, TerAvest M, Utschig LM, Tiede DM, Kerfeld CA. Structural and Functional Characterization of a Short-Chain Flavodoxin Associated with a Noncanonical 1,2-Propanediol Utilization Bacterial Microcompartment. Biochemistry. 2017 Oct 24;56(42):5679-5690. doi: 10.1021/acs.biochem.7b00682. Epub 2017 Oct 10. PubMed PMID: 28956602.
Turmo A, Gonzalez-Esquer CR, Kerfeld CA. Carboxysomes: metabolic modules for CO2 fixation. FEMS Microbiol Lett. 2017 Oct 2;364(18). doi: 10.1093/femsle/fnx176. Review. PubMed PMID: 28934381.
Kerfeld CA. A bioarchitectonic approach to the modular engineering of metabolism. Philos Trans R Soc Lond B Biol Sci. 2017 Sep 26;372(1730). doi: 10.1098/rstb.2016.0387. PubMed PMID: 28808103; PubMed Central PMCID: PMC5566884.
Fujisawa T, Leverenz RL, Nagamine M, Kerfeld CA, Unno M. Raman Optical Activity Reveals Carotenoid Photoactivation Events in the Orange Carotenoid Protein in Solution. J Am Chem Soc. 2017 Aug 2;139(30):10456-10460. doi: 10.1021/jacs.7b05193. Epub 2017 Jul 21. PubMed PMID: 28692285.
Lechno-Yossef S, Melnicki MR, Bao H, Montgomery BL, Kerfeld CA. Synthetic OCP heterodimers are photoactive and recapitulate the fusion of two primitive carotenoproteins in the evolution of cyanobacterial photoprotection. Plant J. 2017 Aug;91(4):646-656. doi: 10.1111/tpj.13593. Epub 2017 Jun 12. PubMed PMID: 28503830.
Kerfeld CA, Melnicki MR, Sutter M, Dominguez-Martin MA. Structure, function and evolution of the cyanobacterial orange carotenoid protein and its homologs. New Phytol. 2017 Aug;215(3):937-951. doi: 10.1111/nph.14670. Epub 2017 Jul 4. Review. PubMed PMID: 28675536.
Young EJ, Burton R, Mahalik JP, Sumpter BG, Fuentes-Cabrera M, Kerfeld CA, Ducat DC. Engineering the Bacterial Microcompartment Domain for Molecular Scaffolding Applications. Front Microbiol. 2017;8:1441. doi: 10.3389/fmicb.2017.01441. eCollection 2017. PubMed PMID: 28824573; PubMed Central PMCID: PMC5534457.
Principles of Systems Biology, No. 19. Cell Syst. 2017 Jul 26;5(1):2-5. doi: 10.1016/j.cels.2017.07.002. PubMed PMID: 28750196.
Bao H, Melnicki MR, Pawlowski EG, Sutter M, Agostoni M, Lechno-Yossef S, Cai F, Montgomery BL, Kerfeld CA. Additional families of orange carotenoid proteins in the photoprotective system of cyanobacteria. Nat Plants. 2017 Jul 10;3:17089. doi: 10.1038/nplants.2017.89. PubMed PMID: 28692021.
Sutter M, Greber B, Aussignargues C, Kerfeld CA. Assembly principles and structure of a 6.5-MDa bacterial microcompartment shell. Science. 2017 Jun 23;356(6344):1293-1297. doi: 10.1126/science.aan3289. PubMed PMID: 28642439; PubMed Central PMCID: PMC5873307.
Sommer M, Cai F, Melnicki M, Kerfeld CA. β-Carboxysome bioinformatics: identification and evolution of new bacterial microcompartment protein gene classes and core locus constraints. J Exp Bot. 2017 Jun 1;68(14):3841-3855. doi: 10.1093/jxb/erx115. PubMed PMID: 28419380; PubMed Central PMCID: PMC5853843.
Bao H, Melnicki MR, Kerfeld CA. Structure and functions of Orange Carotenoid Protein homologs in cyanobacteria. Curr Opin Plant Biol. 2017 Jun;37:1-9. doi: 10.1016/j.pbi.2017.03.010. Epub 2017 Apr 6. Review. PubMed PMID: 28391046.
Brand JJ, Kerfeld CA, Cramer WA, Govindjee. David W. Krogmann, 1931-2016. Photosynth Res. 2017 Apr;132(1):1-12. doi: 10.1007/s11120-016-0335-x. Epub 2017 Feb 2. PubMed PMID: 28155215.
Zarzycki J, Sutter M, Cortina NS, Erb TJ, Kerfeld CA. In Vitro Characterization and Concerted Function of Three Core Enzymes of a Glycyl Radical Enzyme - Associated Bacterial Microcompartment. Sci Rep. 2017 Feb 16;7:42757. doi: 10.1038/srep42757. PubMed PMID: 28202954; PubMed Central PMCID: PMC5311937.
Kirilovsky D, Kerfeld CA. Cyanobacterial photoprotection by the orange carotenoid protein. Nat Plants. 2016 Dec 2;2(12):16180. doi: 10.1038/nplants.2016.180. Review. PubMed PMID: 27909300.
Kerfeld CA. Rewiring Escherichia coli for carbon-dioxide fixation. Nat Biotechnol. 2016 Oct 11;34(10):1035-1036. doi: 10.1038/nbt.3693. PubMed PMID: 27727207.
Melnicki MR, Leverenz RL, Sutter M, López-Igual R, Wilson A, Pawlowski EG, Perreau F, Kirilovsky D, Kerfeld CA. Structure, Diversity, and Evolution of a New Family of Soluble Carotenoid-Binding Proteins in Cyanobacteria. Mol Plant. 2016 Oct 10;9(10):1379-1394. doi: 10.1016/j.molp.2016.06.009. Epub 2016 Jul 5. PubMed PMID: 27392608.
Gonzalez-Esquer CR, Smarda J, Rippka R, Axen SD, Guglielmi G, Gugger M, Kerfeld CA. Cyanobacterial ultrastructure in light of genomic sequence data. Photosynth Res. 2016 Aug;129(2):147-57. doi: 10.1007/s11120-016-0286-2. Epub 2016 Jun 25. Review. PubMed PMID: 27344651.
López-Igual R, Wilson A, Leverenz RL, Melnicki MR, Bourcier de Carbon C, Sutter M, Turmo A, Perreau F, Kerfeld CA, Kirilovsky D. Different Functions of the Paralogs to the N-Terminal Domain of the Orange Carotenoid Protein in the Cyanobacterium Anabaena sp. PCC 7120. Plant Physiol. 2016 Jul;171(3):1852-66. doi: 10.1104/pp.16.00502. Epub 2016 May 13. PubMed PMID: 27208286; PubMed Central PMCID: PMC4936580.
Gonzalez-Esquer CR, Newnham SE, Kerfeld CA. Bacterial microcompartments as metabolic modules for plant synthetic biology. Plant J. 2016 Jul;87(1):66-75. doi: 10.1111/tpj.13166. Epub 2016 Jun 20. PubMed PMID: 26991644.
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