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Piccolo BD, Graham JL, Kang P, Randolph CE, Shankar K, Yeruva L, Fox R, Robeson MS, Moody B, LeRoith T, Stanhope KL, Adams SH, Havel PJ. Progression of diabetes is associated with changes in the ileal transcriptome and ileal-colon morphology in the UC Davis Type 2 Diabetes Mellitus rat. Physiol Rep. 2021 Nov;9(22):e15102. doi: 10.14814/phy2.15102. PubMed PMID: 34806320; PubMed Central PMCID: PMC8606862.
Ruebel ML, Gilley SP, Sims CR, Zhong Y, Turner D, Chintapalli SV, Piccolo BD, Andres A, Shankar K. Associations between Maternal Diet, Body Composition and Gut Microbial Ecology in Pregnancy. Nutrients. 2021 Sep 21;13(9). doi: 10.3390/nu13093295. PubMed PMID: 34579172; PubMed Central PMCID: PMC8468685.
Krishnan S, Adams SH, Witbracht MG, Woodhouse LR, Piccolo BD, Thomas AP, Souza EC, Horn WF, Gertz ER, Van Loan MD, Keim NL. Weight Loss, but Not Dairy Composition of Diet, Moderately Affects Satiety and Postprandial Gut Hormone Patterns in Adults. J Nutr. 2021 Jan 4;151(1):245-254. doi: 10.1093/jn/nxaa327. PubMed PMID: 33245130; PubMed Central PMCID: PMC8096231.
Saben JL, Sims CR, Piccolo BD, Andres A. Maternal adiposity alters the human milk metabolome: associations between nonglucose monosaccharides and infant adiposity. Am J Clin Nutr. 2020 Nov 11;112(5):1228-1239. doi: 10.1093/ajcn/nqaa216. PubMed PMID: 32844207.
Manjarín R, Boutry-Regard C, Suryawan A, Canovas A, Piccolo BD, Maj M, Abo-Ismail M, Nguyen HV, Fiorotto ML, Davis TA. Intermittent leucine pulses during continuous feeding alters novel components involved in skeletal muscle growth of neonatal pigs. Amino Acids. 2020 Sep;52(9):1319-1335. doi: 10.1007/s00726-020-02894-5. Epub 2020 Sep 24. PubMed PMID: 32974749; PubMed Central PMCID: PMC8279413.
Mercer KE, Yeruva L, Pack L, Graham JL, Stanhope KL, Chintapalli SV, Wankhade UD, Shankar K, Havel PJ, Adams SH, Piccolo BD. Xenometabolite signatures in the UC Davis type 2 diabetes mellitus rat model revealed using a metabolomics platform enriched with microbe-derived metabolites. Am J Physiol Gastrointest Liver Physiol. 2020 Aug 1;319(2):G157-G169. doi: 10.1152/ajpgi.00105.2020. Epub 2020 Jun 8. PubMed PMID: 32508155; PubMed Central PMCID: PMC7500265.
Mercer KE, Ten Have GAM, Pack L, Lan R, Deutz NEP, Adams SH, Piccolo BD. Net release and uptake of xenometabolites across intestinal, hepatic, muscle, and renal tissue beds in healthy conscious pigs. Am J Physiol Gastrointest Liver Physiol. 2020 Aug 1;319(2):G133-G141. doi: 10.1152/ajpgi.00153.2020. Epub 2020 Jun 15. PubMed PMID: 32538141; PubMed Central PMCID: PMC7500263.
Brink LR, Mercer KE, Piccolo BD, Chintapalli SV, Elolimy A, Bowlin AK, Matazel KS, Pack L, Adams SH, Shankar K, Badger TM, Andres A, Yeruva L. Neonatal diet alters fecal microbiota and metabolome profiles at different ages in infants fed breast milk or formula. Am J Clin Nutr. 2020 Jun 1;111(6):1190-1202. doi: 10.1093/ajcn/nqaa076. PubMed PMID: 32330237; PubMed Central PMCID: PMC7266684.
Skinner CM, Nookaew I, Ewing LE, Wongsurawat T, Jenjaroenpun P, Quick CM, Yee EU, Piccolo BD, ElSohly M, Walker LA, Gurley B, Koturbash I. Potential Probiotic or Trigger of Gut Inflammation - The Janus-Faced Nature of Cannabidiol-Rich Cannabis Extract. J Diet Suppl. 2020;17(5):543-560. doi: 10.1080/19390211.2020.1761506. Epub 2020 May 13. PubMed PMID: 32400224; PubMed Central PMCID: PMC7470626.
Hernandez GV, Smith VA, Melnyk M, Burd MA, Sprayberry KA, Edwards MS, Peterson DG, Bennet DC, Fanter RK, Columbus DA, Steibel JP, Glanz H, Immoos C, Rice MS, Santiago-Rodriguez TM, Blank J, VanderKelen JJ, Kitts CL, Piccolo BD, La Frano MR, Burrin DG, Maj M, Manjarin R. Dysregulated FXR-FGF19 signaling and choline metabolism are associated with gut dysbiosis and hyperplasia in a novel pig model of pediatric NASH. Am J Physiol Gastrointest Liver Physiol. 2020 Mar 1;318(3):G582-G609. doi: 10.1152/ajpgi.00344.2019. Epub 2020 Jan 31. PubMed PMID: 32003601; PubMed Central PMCID: PMC7099491.
Brink LR, Matazel K, Piccolo BD, Bowlin AK, Chintapalli SV, Shankar K, Yeruva L. Neonatal Diet Impacts Bioregional Microbiota Composition in Piglets Fed Human Breast Milk or Infant Formula. J Nutr. 2019 Dec 1;149(12):2236-2246. doi: 10.1093/jn/nxz170. PubMed PMID: 31373372; PubMed Central PMCID: PMC6888031.
Morris JK, Piccolo BD, John CS, Green ZD, Thyfault JP, Adams SH. Oxylipin Profiling of Alzheimer's Disease in Nondiabetic and Type 2 Diabetic Elderly. Metabolites. 2019 Sep 5;9(9). doi: 10.3390/metabo9090177. PubMed PMID: 31491971; PubMed Central PMCID: PMC6780570.
Piccolo BD, Hall LM, Stephensen CB, Gertz ER, Van Loan MD. Circulating 25-Hydroxyvitamin D Concentrations in Overweight and Obese Adults Are Explained by Sun Exposure, Skin Reflectance, and Body Composition. Curr Dev Nutr. 2019 Jul;3(7):nzz065. doi: 10.1093/cdn/nzz065. eCollection 2019 Jul. PubMed PMID: 31304455; PubMed Central PMCID: PMC6616201.
Petersen C, Wankhade UD, Bharat D, Wong K, Mueller JE, Chintapalli SV, Piccolo BD, Jalili T, Jia Z, Symons JD, Shankar K, Anandh Babu PV. Dietary supplementation with strawberry induces marked changes in the composition and functional potential of the gut microbiome in diabetic mice. J Nutr Biochem. 2019 Apr;66:63-69. doi: 10.1016/j.jnutbio.2019.01.004. Epub 2019 Jan 18. PubMed PMID: 30771735; PubMed Central PMCID: PMC6490960.
Ruebel ML, Piccolo BD, Mercer KE, Pack L, Moutos D, Shankar K, Andres A. Obesity leads to distinct metabolomic signatures in follicular fluid of women undergoing in vitro fertilization. Am J Physiol Endocrinol Metab. 2019 Mar 1;316(3):E383-E396. doi: 10.1152/ajpendo.00401.2018. Epub 2019 Jan 2. PubMed PMID: 30601701; PubMed Central PMCID: PMC6459300.
Wankhade UD, Zhong Y, Lazarenko OP, Chintapalli SV, Piccolo BD, Chen JR, Shankar K. Sex-Specific Changes in Gut Microbiome Composition following Blueberry Consumption in C57BL/6J Mice. Nutrients. 2019 Feb 1;11(2). doi: 10.3390/nu11020313. PubMed PMID: 30717265; PubMed Central PMCID: PMC6412574.
Wankhade UD, Zhong Y, Kang P, Alfaro M, Chintapalli SV, Piccolo BD, Mercer KE, Andres A, Thakali KM, Shankar K. Maternal High-Fat Diet Programs Offspring Liver Steatosis in a Sexually Dimorphic Manner in Association with Changes in Gut Microbial Ecology in Mice. Sci Rep. 2018 Nov 7;8(1):16502. doi: 10.1038/s41598-018-34453-0. PubMed PMID: 30405201; PubMed Central PMCID: PMC6220325.
Piccolo BD, Graham JL, Stanhope KL, Nookaew I, Mercer KE, Chintapalli SV, Wankhade UD, Shankar K, Havel PJ, Adams SH. Diabetes-associated alterations in the cecal microbiome and metabolome are independent of diet or environment in the UC Davis Type 2 Diabetes Mellitus Rat model. Am J Physiol Endocrinol Metab. 2018 Nov 1;315(5):E961-E972. doi: 10.1152/ajpendo.00203.2018. Epub 2018 Jul 17. PubMed PMID: 30016149; PubMed Central PMCID: PMC6293161.
Miklavcic JJ, Badger TM, Bowlin AK, Matazel KS, Cleves MA, LeRoith T, Saraf MK, Chintapalli SV, Piccolo BD, Shankar K, Yeruva L. Human Breast-Milk Feeding Enhances the Humoral and Cell-Mediated Immune Response in Neonatal Piglets. J Nutr. 2018 Nov 1;148(11):1860-1870. doi: 10.1093/jn/nxy170. PubMed PMID: 30247686; PubMed Central PMCID: PMC6209812.
Agrawal K, Bosviel R, Piccolo BD, Newman JW. Oral ibuprofen differentially affects plasma and sweat lipid mediator profiles in healthy adult males. Prostaglandins Other Lipid Mediat. 2018 Jul;137:1-8. doi: 10.1016/j.prostaglandins.2018.05.009. Epub 2018 May 17. PubMed PMID: 29778785; PubMed Central PMCID: PMC6057826.
Morris JK, Piccolo BD, Shankar K, Thyfault JP, Adams SH. The serum metabolomics signature of type 2 diabetes is obscured in Alzheimer's disease. Am J Physiol Endocrinol Metab. 2018 Jun 1;314(6):E584-E596. doi: 10.1152/ajpendo.00377.2017. Epub 2017 Dec 26. PubMed PMID: 29351484; PubMed Central PMCID: PMC6032067.
Mercer KE, Bhattacharyya S, Diaz-Rubio ME, Piccolo BD, Pack LM, Sharma N, Chaudhury M, Cleves MA, Chintapalli SV, Shankar K, Ronis MJJ, Yeruva L. Infant Formula Feeding Increases Hepatic Cholesterol 7α Hydroxylase (CYP7A1) Expression and Fecal Bile Acid Loss in Neonatal Piglets. J Nutr. 2018 May 1;148(5):702-711. doi: 10.1093/jn/nxy038. PubMed PMID: 30053282; PubMed Central PMCID: PMC6857617.
Piccolo BD, Wankhade UD, Chintapalli SV, Bhattacharyya S, Chunqiao L, Shankar K. Dynamic assessment of microbial ecology (DAME): a web app for interactive analysis and visualization of microbial sequencing data. Bioinformatics. 2018 Mar 15;34(6):1050-1052. doi: 10.1093/bioinformatics/btx686. PubMed PMID: 29087435; PubMed Central PMCID: PMC5860285.
Piccolo BD, Mercer KE, Bhattacharyya S, Bowlin AK, Saraf MK, Pack L, Chintapalli SV, Shankar K, Adams SH, Badger TM, Yeruva L. Early Postnatal Diets Affect the Bioregional Small Intestine Microbiome and Ileal Metabolome in Neonatal Pigs. J Nutr. 2017 Aug;147(8):1499-1509. doi: 10.3945/jn.117.252767. Epub 2017 Jun 28. PubMed PMID: 28659406.
Saraf MK, Piccolo BD, Bowlin AK, Mercer KE, LeRoith T, Chintapalli SV, Shankar K, Badger TM, Yeruva L. Formula diet driven microbiota shifts tryptophan metabolism from serotonin to tryptamine in neonatal porcine colon. Microbiome. 2017 Jul 14;5(1):77. doi: 10.1186/s40168-017-0297-z. PubMed PMID: 28705171; PubMed Central PMCID: PMC5513086.
Aguer C, Piccolo BD, Fiehn O, Adams SH, Harper ME. A novel amino acid and metabolomics signature in mice overexpressing muscle uncoupling protein 3. FASEB J. 2017 Feb;31(2):814-827. doi: 10.1096/fj.201600914R. Epub 2016 Nov 10. PubMed PMID: 27871066; PubMed Central PMCID: PMC5240668.
Kieffer DA, Piccolo BD, Marco ML, Kim EB, Goodson ML, Keenan MJ, Dunn TN, Knudsen KE, Adams SH, Martin RJ. Obese Mice Fed a Diet Supplemented with Enzyme-Treated Wheat Bran Display Marked Shifts in the Liver Metabolome Concurrent with Altered Gut Bacteria. J Nutr. 2016 Dec;146(12):2445-2460. doi: 10.3945/jn.116.238923. Epub 2016 Oct 19. PubMed PMID: 27798344; PubMed Central PMCID: PMC5118767.
Kieffer DA, Piccolo BD, Marco ML, Kim EB, Goodson ML, Keenan MJ, Dunn TN, Knudsen KE, Martin RJ, Adams SH. Mice Fed a High-Fat Diet Supplemented with Resistant Starch Display Marked Shifts in the Liver Metabolome Concurrent with Altered Gut Bacteria. J Nutr. 2016 Dec;146(12):2476-2490. doi: 10.3945/jn.116.238931. Epub 2016 Nov 2. PubMed PMID: 27807042; PubMed Central PMCID: PMC5118768.
Piccolo BD, Graham JL, Stanhope KL, Fiehn O, Havel PJ, Adams SH. Plasma amino acid and metabolite signatures tracking diabetes progression in the UCD-T2DM rat model. Am J Physiol Endocrinol Metab. 2016 Jun 1;310(11):E958-69. doi: 10.1152/ajpendo.00052.2016. Epub 2016 Apr 19. PubMed PMID: 27094034; PubMed Central PMCID: PMC4935135.
McCoin CS, Piccolo BD, Knotts TA, Matern D, Vockley J, Gillingham MB, Adams SH. Unique plasma metabolomic signatures of individuals with inherited disorders of long-chain fatty acid oxidation. J Inherit Metab Dis. 2016 May;39(3):399-408. doi: 10.1007/s10545-016-9915-3. Epub 2016 Feb 23. PubMed PMID: 26907176; PubMed Central PMCID: PMC4851894.
Kieffer DA, Piccolo BD, Vaziri ND, Liu S, Lau WL, Khazaeli M, Nazertehrani S, Moore ME, Marco ML, Martin RJ, Adams SH. Resistant starch alters gut microbiome and metabolomic profiles concurrent with amelioration of chronic kidney disease in rats. Am J Physiol Renal Physiol. 2016 May 1;310(9):F857-71. doi: 10.1152/ajprenal.00513.2015. Epub 2016 Feb 3. PubMed PMID: 26841824; PubMed Central PMCID: PMC4867313.
Piccolo BD, Comerford KB, Karakas SE, Knotts TA, Fiehn O, Adams SH. Whey protein supplementation does not alter plasma branched-chained amino acid profiles but results in unique metabolomics patterns in obese women enrolled in an 8-week weight loss trial. J Nutr. 2015 Apr;145(4):691-700. doi: 10.3945/jn.114.203943. Epub 2015 Feb 4. PubMed PMID: 25833773.
Piccolo BD, Keim NL, Fiehn O, Adams SH, Van Loan MD, Newman JW. Habitual physical activity and plasma metabolomic patterns distinguish individuals with low vs. high weight loss during controlled energy restriction. J Nutr. 2015 Apr;145(4):681-90. doi: 10.3945/jn.114.201574. Epub 2015 Jan 28. PubMed PMID: 25833772; PubMed Central PMCID: PMC4381764.
Labouesse MA, Gertz ER, Piccolo BD, Souza EC, Schuster GU, Witbracht MG, Woodhouse LR, Adams SH, Keim NL, Van Loan MD. Associations among endocrine, inflammatory, and bone markers, body composition and weight loss induced bone loss. Bone. 2014 Jul;64:138-46. doi: 10.1016/j.bone.2014.03.047. Epub 2014 Apr 4. PubMed PMID: 24709689; PubMed Central PMCID: PMC4408214.
Piccolo BD, Dolnikowski G, Seyoum E, Thomas AP, Gertz ER, Souza EC, Woodhouse LR, Newman JW, Keim NL, Adams SH, Van Loan MD. Association between subcutaneous white adipose tissue and serum 25-hydroxyvitamin D in overweight and obese adults. Nutrients. 2013 Aug 26;5(9):3352-66. doi: 10.3390/nu5093352. PubMed PMID: 24067385; PubMed Central PMCID: PMC3798908.
Van Loan MD, Keim NL, Adams SH, Souza E, Woodhouse LR, Thomas A, Witbracht M, Gertz ER, Piccolo B, Bremer AA, Spurlock M. Dairy Foods in a Moderate Energy Restricted Diet Do Not Enhance Central Fat, Weight, and Intra-Abdominal Adipose Tissue Losses nor Reduce Adipocyte Size or Inflammatory Markers in Overweight and Obese Adults: A Controlled Feeding Study. J Obes. 2011;2011:989657. doi: 10.1155/2011/989657. Epub 2011 Sep 14. PubMed PMID: 21941636; PubMed Central PMCID: PMC3173723.
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