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Kerman BE, Cheshire AM, Andrew DJ. From fate to function: the Drosophila trachea and salivary gland as models for tubulogenesis. Differentiation. 2006 Sep;74(7):326-48. doi: 10.1111/j.1432-0436.2006.00095.x. Review. PubMed PMID: 16916373; PubMed Central PMCID: PMC2827874.
Kerman BE, Cheshire AM, Myat MM, Andrew DJ. Ribbon modulates apical membrane during tube elongation through Crumbs and Moesin. Dev Biol. 2008 Aug 1;320(1):278-88. doi: 10.1016/j.ydbio.2008.05.541. Epub 2008 May 22. PubMed PMID: 18585700; PubMed Central PMCID: PMC2562552.
Cheshire AM, Kerman BE, Zipfel WR, Spector AA, Andrew DJ. Kinetic and mechanical analysis of live tube morphogenesis. Dev Dyn. 2008 Oct;237(10):2874-88. doi: 10.1002/dvdy.21709. PubMed PMID: 18816822; PubMed Central PMCID: PMC2562558.
Jattani R, Patel U, Kerman B, Myat MM. Deficiency screen identifies a novel role for beta 2 tubulin in salivary gland and myoblast migration in the Drosophila embryo. Dev Dyn. 2009 Apr;238(4):853-63. doi: 10.1002/dvdy.21899. PubMed PMID: 19253394; PubMed Central PMCID: PMC3105526.
Kerman BE, Andrew DJ. Staying alive: dalmation mediated blocking of apoptosis is essential for tissue maintenance. Dev Dyn. 2010 Jun;239(6):1609-21. doi: 10.1002/dvdy.22281. PubMed PMID: 20503358; PubMed Central PMCID: PMC3086122.
Deshmukh VA, Tardif V, Lyssiotis CA, Green CC, Kerman B, Kim HJ, Padmanabhan K, Swoboda JG, Ahmad I, Kondo T, Gage FH, Theofilopoulos AN, Lawson BR, Schultz PG, Lairson LL. A regenerative approach to the treatment of multiple sclerosis. Nature. 2013 Oct 17;502(7471):327-332. doi: 10.1038/nature12647. Epub 2013 Oct 9. PubMed PMID: 24107995; PubMed Central PMCID: PMC4431622.
Crotti A, Benner C, Kerman BE, Gosselin D, Lagier-Tourenne C, Zuccato C, Cattaneo E, Gage FH, Cleveland DW, Glass CK. Mutant Huntingtin promotes autonomous microglia activation via myeloid lineage-determining factors. Nat Neurosci. 2014 Apr;17(4):513-21. doi: 10.1038/nn.3668. Epub 2014 Mar 2. PubMed PMID: 24584051; PubMed Central PMCID: PMC4113004.
Kerman BE, Kim HJ, Padmanabhan K, Mei A, Georges S, Joens MS, Fitzpatrick JA, Jappelli R, Chandross KJ, August P, Gage FH. In vitro myelin formation using embryonic stem cells. Development. 2015 Jun 15;142(12):2213-25. doi: 10.1242/dev.116517. Epub 2015 May 26. PubMed PMID: 26015546; PubMed Central PMCID: PMC4483765.
Denli AM, Narvaiza I, Kerman BE, Pena M, Benner C, Marchetto MC, Diedrich JK, Aslanian A, Ma J, Moresco JJ, Moore L, Hunter T, Saghatelian A, Gage FH. Primate-specific ORF0 contributes to retrotransposon-mediated diversity. Cell. 2015 Oct 22;163(3):583-93. doi: 10.1016/j.cell.2015.09.025. Epub 2015 Oct 22. PubMed PMID: 26496605.
AYDINLI F, ÇELİK E, VATANDAŞLAR B, KERMAN B. Myelin disorders and stem cells: as therapies and models. Turkish Journal of Biology. 2016; 40(5):1068-1080.
AYDINLI F, Çelik E, Vatandaşlar B, Kerman B. Myelin disorders and stem cells: as therapies and models. Turkish Journal of Biology. 2016; 40(5):1068-1080.
Ettle B, Kerman BE, Valera E, Gillmann C, Schlachetzki JC, Reiprich S, Büttner C, Ekici AB, Reis A, Wegner M, Bäuerle T, Riemenschneider MJ, Masliah E, Gage FH, Winkler J. α-Synuclein-induced myelination deficit defines a novel interventional target for multiple system atrophy. Acta Neuropathol. 2016 Jul;132(1):59-75. doi: 10.1007/s00401-016-1572-y. Epub 2016 Apr 8. PubMed PMID: 27059609; PubMed Central PMCID: PMC4912450.
Santos R, Vadodaria KC, Jaeger BN, Mei A, Lefcochilos-Fogelquist S, Mendes APD, Erikson G, Shokhirev M, Randolph-Moore L, Fredlender C, Dave S, Oefner R, Fitzpatrick C, Pena M, Barron JJ, Ku M, Denli AM, Kerman BE, Charnay P, Kelsoe JR, Marchetto MC, Gage FH. Differentiation of Inflammation-Responsive Astrocytes from Glial Progenitors Generated from Human Induced Pluripotent Stem Cells. Stem Cell Reports. 2017 Jun 6;8(6):1757-1769. doi: 10.1016/j.stemcr.2017.05.011. PubMed PMID: 28591655; PubMed Central PMCID: PMC5470172.
Kilic U, Caglayan AB, Beker MC, Gunal MY, Caglayan B, Yalcin E, Kelestemur T, Gundogdu RZ, Yulug B, Yılmaz B, Kerman BE, Kilic E. Particular phosphorylation of PI3K/Akt on Thr308 via PDK-1 and PTEN mediates melatonin's neuroprotective activity after focal cerebral ischemia in mice. Redox Biol. 2017 Aug;12:657-665. doi: 10.1016/j.redox.2017.04.006. Epub 2017 Apr 5. PubMed PMID: 28395173; PubMed Central PMCID: PMC5388917.
Cimen S, Capar A, Ekinci D, Ayten U, Kerman B, Töreyin B. DeepMQ: A Deep Learning Approach Based Myelin Quantification in Microscopic Fluorescence Images. 2018 26th European Signal Processing Conference (EUSIPCO). 2018; :61-65.
Çimen S, Çapar A, Ekinci D, Ayten U, Kerman B, Töreyin B. DeepMQ: A deep learning approach based myelin quantification in microscopic fluorescence images. 2018 26th European Signal Processing Conference (EUSIPCO). 2018; :61-65.
Segal L, Agarwal D, Isaacson KJ, Oehmke TB, Kumar B, Chen JS, Cusimano JM, Negi S, Tiper I, Bakermans AJ, Jensen MM, Sanganyado E, Zaidi SS, Romero-Molina C, Martínez SE, Anderson SM, Santos GM, De Lella Ezcurra AL, Farragher J, Sharma V, Duncan G, Dutton-Regester K, Kim SA, Yu S, Schwendimann BA, Reichardt JKV, Halder A, Dennis AF, Ellwanger JH, Chiu YH, Kerman BE. NextGen Voices: Quality mentoring. Science. 2018 Oct 5;362(6410):22-24. doi: 10.1126/science.aav5914. PubMed PMID: 30287645.
Cimen Yetis S, Ekinci DA, Cakir E, Eksioglu EM, Ayten UE, Capar A, Toreyin BU, Kerman BE. Myelin Segmentation in Fluorescence Microscopy Images. Medical Technologies Congress. 2019. doi: TIPTEKNO.2019.8895041.
Toy M, Vatandaslar B, Kerman B. Refractive index tomography of myelinating glial cells. Quantitative Phase Imaging V. 2019; 10887:97-101.
Yetiş S, Ekinci D, Çakir E, Ekşioğlu E, Ayten U, Çapar A, Töreyin B, Kerman B. Myelin segmentation in fluorescence microscopy images. 2019 Medical Technologies Congress (TIPTEKNO). 2019; :1-4.
Marchetto MC, Hrvoj-Mihic B, Kerman BE, Yu DX, Vadodaria KC, Linker SB, Narvaiza I, Santos R, Denli AM, Mendes AP, Oefner R, Cook J, McHenry L, Grasmick JM, Heard K, Fredlender C, Randolph-Moore L, Kshirsagar R, Xenitopoulos R, Chou G, Hah N, Muotri AR, Padmanabhan K, Semendeferi K, Gage FH. Species-specific maturation profiles of human, chimpanzee and bonobo neural cells. Elife. 2019 Feb 7;8. doi: 10.7554/eLife.37527. PubMed PMID: 30730291; PubMed Central PMCID: PMC6366899.
Toy MF, Kurt Vatandaslar B, Kerman BE. Refractive index tomography of myelinating glial cells. International Society for Optics and Photonics (SPIE) Proceedings Quantitative Phase Imaging V. 2019 March; :1088713. doi: 10.1117/12.2512706.
Kumar B, Jensen MM, Strielkowski W, Johnston JT, Sharma V, Dandara C, Shehata MM, Struett MM, Nikolaou A, Szymanski DW, Abdul-Ghani R, Cao B, Varzinczak LH, Kerman BE, Arthur PK, Oda FS, Bohon W, Ellwanger JH, Tyner S, Jordan EJ, Murphy C. NextGen Voices: Science-inspired sustainable behavior. Science. 2019 May 31;364(6443):822-824. doi: 10.1126/science.aax8945. PubMed PMID: 31147504.
Kerman BE, Genoud S, Kurt Vatandaslar B, Denli AM, Georges Ghosh S, Xu X, Yeo GW, Aimone JB, Gage FH. Motoneuron expression profiling identifies an association between an axonal splice variant of HDGF-related protein 3 and peripheral myelination. J Biol Chem. 2020 Aug 21;295(34):12233-12246. doi: 10.1074/jbc.RA120.014329. Epub 2020 Jul 9. PubMed PMID: 32647008; PubMed Central PMCID: PMC7443494.
Çimen Yetiş S, Çapar A, Ekinci DA, Ayten UE, Kerman BE, Töreyin BU. Myelin detection in fluorescence microscopy images using machine learning. J Neurosci Methods. 2020 Dec 1;346:108946. doi: 10.1016/j.jneumeth.2020.108946. Epub 2020 Sep 12. PubMed PMID: 32931810.
Yurduseven K, Babal YK, Celik E, Kerman BE, Kurnaz IA. Multiple Sclerosis Biomarker Candidates Revealed by Cell-Type-Specific Interactome Analysis. OMICS. 2022 May;26(5):305-317. doi: 10.1089/omi.2022.0023. Epub 2022 Apr 27. PubMed PMID: 35483054.
Noveir SD, Kerman BE, Xian H, Meuret C, Smadi S, Martinez AE, Johansson J, Zetterberg H, Parks BA, Kuklenyik Z, Mack WJ, Johansson JO, Yassine HN. Effect of the ABCA1 agonist CS-6253 on amyloid-β and lipoprotein metabolism in cynomolgus monkeys. Alzheimers Res Ther. 2022 Jun 24;14(1):87. doi: 10.1186/s13195-022-01028-1. PubMed PMID: 35751102; PubMed Central PMCID: PMC9229758.
Van Valkenburgh J, Duro MVV, Burnham E, Chen Q, Wang S, Tran J, Kerman BE, Hwang SH, Liu X, Sta Maria NS, Zanderigo F, Croteau E, Rapoport SI, Cunnane SC, Jacobs RE, Yassine HN, Chen K. Radiosynthesis of 20-[(18)F]fluoroarachidonic acid for PET-MR imaging: Biological evaluation in ApoE4-TR mice. Prostaglandins Leukot Essent Fatty Acids. 2022 Nov;186:102510. doi: 10.1016/j.plefa.2022.102510. Epub 2022 Oct 20. PubMed PMID: 36341886; PubMed Central PMCID: PMC9888757.
Aydınlı Fİ, Er S, Kerman BE. Two phases of macrophages: Inducing maturation and death of oligodendrocytes in vitro co-culture. J Neurosci Methods. 2022 Dec 1;382:109723. doi: 10.1016/j.jneumeth.2022.109723. Epub 2022 Oct 4. PubMed PMID: 36207003.
Dursun G, Bijelić D, Ayşit N, Kurt Vatandaşlar B, Radenović L, Çapar A, Kerman BE, Andjus PR, Korenić A, Özkaya U. Combined segmentation and classification-based approach to automated analysis of biomedical signals obtained from calcium imaging. PLoS One. 2023;18(2):e0281236. doi: 10.1371/journal.pone.0281236. eCollection 2023. PubMed PMID: 36745648; PubMed Central PMCID: PMC9901747.
Yassine HN, Self W, Kerman BE, Santoni G, Navalpur Shanmugam N, Abdullah L, Golden LR, Fonteh AN, Harrington MG, Gräff J, Gibson GE, Kalaria R, Luchsinger JA, Feldman HH, Swerdlow RH, Johnson LA, Albensi BC, Zlokovic BV, Tanzi R, Cunnane S, Samieri C, Scarmeas N, Bowman GL. Nutritional metabolism and cerebral bioenergetics in Alzheimer's disease and related dementias. Alzheimers Dement. 2023 Mar;19(3):1041-1066. doi: 10.1002/alz.12845. Epub 2022 Dec 8. Review. PubMed PMID: 36479795; PubMed Central PMCID: PMC10576546.
Yazıcı G, Kurt Vatandaslar B, Aydin Canturk I, Aydinli FI, Arici Duz O, Karakoc E, Kerman BE, Alkan C. Identification of protein-protein interaction bridges for multiple sclerosis. Bioinformatics. 2023 Apr 3;39(4). doi: 10.1093/bioinformatics/btad175. PubMed PMID: 37018152; PubMed Central PMCID: PMC10115466.
Bantugan MA, Xian H, Solomon V, Lee M, Cai Z, Wang S, Duro MV, Kerman BE, Fonteh A, Meuret C, Li M, Braskie MN, McIntire LBJ, Jurin L, Oberlin S, Evans J, Davis R, Mack WJ, Abdullah L, Yassine HN. Associations of ApoE4 status and DHA supplementation on plasma and CSF lipid profiles and entorhinal cortex thickness. J Lipid Res. 2023 Jun;64(6):100354. doi: 10.1016/j.jlr.2023.100354. Epub 2023 Mar 22. PubMed PMID: 36958720; PubMed Central PMCID: PMC10230261.
Çapar A, Çimen S, Aladağ Z, Ekinci DA, Ayten UE, Kerman BE, Töreyin BU. A multi-spectral myelin annotation tool for machine learning based myelin quantification. F1000Res. 2020;9:1492. doi: 10.12688/f1000research.27139.4. eCollection 2020. PubMed PMID: 37990695; PubMed Central PMCID: PMC10660289.
Duro MVV, Van Valkenburgh J, Ingles DE, Tran J, Cai Z, Ebright B, Wang S, Kerman BE, Galvan J, Hwang SH, Sta Maria NS, Zanderigo F, Croteau E, Cunnane SC, Rapoport SI, Louie SG, Jacobs RE, Yassine HN, Chen K. Synthesis and Preclinical Evaluation of 22-[(18)F]Fluorodocosahexaenoic Acid as a Positron Emission Tomography Probe for Monitoring Brain Docosahexaenoic Acid Uptake Kinetics. ACS Chem Neurosci. 2023 Dec 20;14(24):4409-4418. doi: 10.1021/acschemneuro.3c00681. Epub 2023 Dec 4. PubMed PMID: 38048230; PubMed Central PMCID: PMC10739598.
Kerman BE, Self W, Yassine HN. Can the gut microbiome inform the effects of omega-3 fatty acid supplementation trials on cognition?. Curr Opin Clin Nutr Metab Care. 2024 Mar 1;27(2):116-124. doi: 10.1097/MCO.0000000000001007. Epub 2023 Dec 22. Review. PubMed PMID: 38170690; PubMed Central PMCID: PMC10872319.
Wang S, Li B, Cai Z, Hugo C, Li J, Sun Y, Qian L, Remaley AT, Tcw J, Chui HC, Bennett DA, Arvanitakis Z, Kerman B, Yassine H. Cellular senescence induced by cholesterol accumulation is mediated by lysosomal ABCA1 in APOE4 and AD. Res Sq. 2024 May 14;. doi: 10.21203/rs.3.rs-4373201/v1. PubMed PMID: 38798644; PubMed Central PMCID: PMC11118681.
Li B, Wang S, Kerman B, Hugo C, Shwab EK, Shu C, Chiba-Falek O, Arvanitakis Z, Yassine H. Microglia States are Susceptible to Senescence and Cholesterol Dysregulation in Alzheimer's Disease. bioRxiv. 2024 Nov 18;. doi: 10.1101/2024.11.18.624141. PubMed PMID: 39605544; PubMed Central PMCID: PMC11601396.
Nedelkov D, Tsokolas ZE, Rodrigues MS, Sible I, Han SD, Kerman BE, Renteln M, Mack WJ, Pascoal TA, Yassine HN. Increased cerebrospinal fluid and plasma apoE glycosylation is associated with reduced levels of Alzheimer's disease biomarkers. bioRxiv. 2024 Dec 21;. doi: 10.1101/2024.12.20.629619. PubMed PMID: 39763949; PubMed Central PMCID: PMC11702616.
Wang S, Li B, Li J, Cai Z, Hugo C, Sun Y, Qian L, Tcw J, Chui HC, Dikeman D, Asante I, Louie SG, Bennett DA, Arvanitakis Z, Remaley AT, Kerman BE, Yassine HN. Cellular senescence induced by cholesterol accumulation is mediated by lysosomal ABCA1 in APOE4 and AD. Mol Neurodegener. 2025 Feb 4;20(1):15. doi: 10.1186/s13024-025-00802-7. PubMed PMID: 39901180; PubMed Central PMCID: PMC11792374.
Ma QL, Ebright B, Li B, Li J, Galvan J, Sanchez A, Renteln M, Dikeman D, Wang S, Kerman BE, Seidler P, Gutierrez-Grebenkova B, Hjelm BE, Hawes D, Hiniker AE, Hurth KM, Bennett DA, Louie SG, Chui HC, Limon A, Arvanitakis Z, Yassine HN. Evidence for cPLA2 activation in Alzheimer's Disease Synaptic Pathology. bioRxiv. 2025 Apr 1;. doi: 10.1101/2025.03.27.645605. PubMed PMID: 40236242; PubMed Central PMCID: PMC11996316.
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