My Bibliography

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Breen MS, Fan X, Levy T, Pollak RM, Collins B, Osman A, Tocheva AS, Sahin M, Berry-Kravis E, Soorya L, Thurm A, Powell CM, Bernstein JA, Kolevzon A, Buxbaum JD. Large 22q13.3 deletions perturb peripheral transcriptomic and metabolomic profiles in Phelan-McDermid syndrome. HGG Adv. 2023 Jan 12;4(1):100145. doi: 10.1016/j.xhgg.2022.100145. eCollection 2023 Jan 12. PubMed PMID: 36276299; PubMed Central PMCID: PMC9579712.

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Machado-Rivas F, Jaimes C, Scherrer B, Benson LA, Gorman MP, Warfield SK, Afacan O. Evaluation of white matter microstructure in pediatric onset multiple sclerosis with diffusion compartment imaging. J Neuroimaging. 2022 Nov;32(6):1098-1108. doi: 10.1111/jon.13038. Epub 2022 Aug 29. PubMed PMID: 36036739.

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Taquet M, Smith SM, Prohl AK, Peters JM, Warfield SK, Scherrer B, Harrison PJ. A structural brain network of genetic vulnerability to psychiatric illness. Mol Psychiatry. 2021 Jun;26(6):2089-2100. doi: 10.1038/s41380-020-0723-7. Epub 2020 May 6. PubMed PMID: 32372008; PubMed Central PMCID: PMC7644622.

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Reymbaut A, Caron AV, Gilbert G, Szczepankiewicz F, Nilsson M, Warfield SK, Descoteaux M, Scherrer B. Magic DIAMOND: Multi-fascicle diffusion compartment imaging with tensor distribution modeling and tensor-valued diffusion encoding. Med Image Anal. 2021 May;70:101988. doi: 10.1016/j.media.2021.101988. Epub 2021 Feb 4. PubMed PMID: 33611054.

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Cohen AL, Mulder BPF, Prohl AK, Soussand L, Davis P, Kroeck MR, McManus P, Gholipour A, Scherrer B, Bebin EM, Wu JY, Northrup H, Krueger DA, Sahin M, Warfield SK, Fox MD, Peters JM. Tuber Locations Associated with Infantile Spasms Map to a Common Brain Network. Ann Neurol. 2021 Apr;89(4):726-739. doi: 10.1002/ana.26015. Epub 2021 Jan 21. PubMed PMID: 33410532; PubMed Central PMCID: PMC7969435.

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Frazier TW, Jaini R, Busch RM, Wolf M, Sadler T, Klaas P, Hardan AY, Martinez-Agosto JA, Sahin M, Eng C. Cross-level analysis of molecular and neurobehavioral function in a prospective series of patients with germline heterozygous PTEN mutations with and without autism. Mol Autism. 2021 Jan 28;12(1):5. doi: 10.1186/s13229-020-00406-6. PubMed PMID: 33509259; PubMed Central PMCID: PMC7841880.

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Ning L, Bonet-Carne E, Grussu F, Sepehrband F, Kaden E, Veraart J, Blumberg SB, Khoo CS, Palombo M, Kokkinos I, Alexander DC, Coll-Font J, Scherrer B, Warfield SK, Karayumak SC, Rathi Y, Koppers S, Weninger L, Ebert J, Merhof D, Moyer D, Pietsch M, Christiaens D, Gomes Teixeira RA, Tournier JD, Schilling KG, Huo Y, Nath V, Hansen C, Blaber J, Landman BA, Zhylka A, Pluim JPW, Parker G, Rudrapatna U, Evans J, Charron C, Jones DK, Tax CMW. Cross-scanner and cross-protocol multi-shell diffusion MRI data harmonization: Algorithms and results. Neuroimage. 2020 Nov 1;221:117128. doi: 10.1016/j.neuroimage.2020.117128. Epub 2020 Jul 13. PubMed PMID: 32673745; PubMed Central PMCID: PMC10243465.

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Grayson LE, Peters JM, McPherson T, Krueger DA, Sahin M, Wu JY, Northrup HA, Porter B, Cutter GR, O'Kelley SE, Krefting J, Stone SS, Madsen JR, Fallah A, Blount JP, Weiner HL, Bebin EM. Pilot Study of Neurodevelopmental Impact of Early Epilepsy Surgery in Tuberous Sclerosis Complex. Pediatr Neurol. 2020 Aug;109:39-46. doi: 10.1016/j.pediatrneurol.2020.04.002. Epub 2020 Apr 14. PubMed PMID: 32418847; PubMed Central PMCID: PMC7387194.

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Campanale CM, Scherrer B, Afacan O, Majeed A, Warfield SK, Sanders SP. Myofiber organization in the failing systemic right ventricle. J Cardiovasc Magn Reson. 2020 Jun 29;22(1):49. doi: 10.1186/s12968-020-00637-9. PubMed PMID: 32600420; PubMed Central PMCID: PMC7322876.

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Bassell J, Srivastava S, Prohl AK, Scherrer B, Kapur K, Filip-Dhima R, Berry-Kravis E, Soorya L, Thurm A, Powell CM, Bernstein JA, Buxbaum JD, Kolevzon A, Warfield SK, Sahin M. Diffusion Tensor Imaging Abnormalities in the Uncinate Fasciculus and Inferior Longitudinal Fasciculus in Phelan-McDermid Syndrome. Pediatr Neurol. 2020 May;106:24-31. doi: 10.1016/j.pediatrneurol.2020.01.006. Epub 2020 Jan 31. PubMed PMID: 32107139; PubMed Central PMCID: PMC7190002.

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Scherrer B, Prohl AK, Taquet M, Kapur K, Peters JM, Tomas-Fernandez X, Davis PE, M Bebin E, Krueger DA, Northrup H, Y Wu J, Sahin M, Warfield SK. The Connectivity Fingerprint of the Fusiform Gyrus Captures the Risk of Developing Autism in Infants with Tuberous Sclerosis Complex. Cereb Cortex. 2020 Apr 14;30(4):2199-2214. doi: 10.1093/cercor/bhz233. PubMed PMID: 31812987; PubMed Central PMCID: PMC7175001.

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Peters JM, Hyde DE, Chu CJ, Boom M, Scherrer B, Madsen JR, Stone SS, Ouaalam H, Prabhu SP, Sahin M, Warfield SK. Lesion-Constrained Electrical Source Imaging: A Novel Approach in Epilepsy Surgery for Tuberous Sclerosis Complex. J Clin Neurophysiol. 2020 Jan;37(1):79-86. doi: 10.1097/WNP.0000000000000615. PubMed PMID: 31261349; PubMed Central PMCID: PMC6934937.

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Prohl AK, Scherrer B, Tomas-Fernandez X, Davis PE, Filip-Dhima R, Prabhu SP, Peters JM, Bebin EM, Krueger DA, Northrup H, Wu JY, Sahin M, Warfield SK. Early white matter development is abnormal in tuberous sclerosis complex patients who develop autism spectrum disorder. J Neurodev Disord. 2019 Dec 16;11(1):36. doi: 10.1186/s11689-019-9293-x. PubMed PMID: 31838998; PubMed Central PMCID: PMC6912944.

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Rojas-Vite G, Coronado-Leija R, Narvaez-Delgado O, Ramírez-Manzanares A, Marroquín JL, Noguez-Imm R, Aranda ML, Scherrer B, Larriva-Sahd J, Concha L. Histological validation of per-bundle water diffusion metrics within a region of fiber crossing following axonal degeneration. Neuroimage. 2019 Nov 1;201:116013. doi: 10.1016/j.neuroimage.2019.116013. Epub 2019 Jul 19. PubMed PMID: 31326575.

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Busch RM, Srivastava S, Hogue O, Frazier TW, Klaas P, Hardan A, Martinez-Agosto JA, Sahin M, Eng C. Neurobehavioral phenotype of autism spectrum disorder associated with germline heterozygous mutations in PTEN. Transl Psychiatry. 2019 Oct 8;9(1):253. doi: 10.1038/s41398-019-0588-1. PubMed PMID: 31594918; PubMed Central PMCID: PMC6783427.

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Narvaez-Delgado O, Rojas-Vite G, Coronado-Leija R, Ramírez-Manzanares A, Marroquín JL, Noguez-Imm R, Aranda ML, Scherrer B, Larriva-Sahd J, Concha L. Histological and diffusion-weighted magnetic resonance imaging data from normal and degenerated optic nerve and chiasm of the rat. Data Brief. 2019 Oct;26:104399. doi: 10.1016/j.dib.2019.104399. eCollection 2019 Oct. PubMed PMID: 31516943; PubMed Central PMCID: PMC6732409.

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Taquet M, Jankovski A, Rensonnet G, Jacobs D, des Rieux A, Macq B, Warfield SK, Scherrer B. Extra-axonal restricted diffusion as an in-vivo marker of reactive microglia. Sci Rep. 2019 Sep 25;9(1):13874. doi: 10.1038/s41598-019-50432-5. PubMed PMID: 31554896; PubMed Central PMCID: PMC6761095.

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Davis PE, Kapur K, Filip-Dhima R, Trowbridge SK, Little E, Wilson A, Leuchter A, Bebin EM, Krueger D, Northrup H, Wu JY, Sahin M, Peters JM. Increased electroencephalography connectivity precedes epileptic spasm onset in infants with tuberous sclerosis complex. Epilepsia. 2019 Aug;60(8):1721-1732. doi: 10.1111/epi.16284. Epub 2019 Jul 12. PubMed PMID: 31297797; PubMed Central PMCID: PMC6687536.

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Prohl AK, Scherrer B, Tomas-Fernandez X, Filip-Dhima R, Kapur K, Velasco-Annis C, Clancy S, Carmody E, Dean M, Valle M, Prabhu SP, Peters JM, Bebin EM, Krueger DA, Northrup H, Wu JY, Sahin M, Warfield SK. Reproducibility of Structural and Diffusion Tensor Imaging in the TACERN Multi-Center Study. Front Integr Neurosci. 2019;13:24. doi: 10.3389/fnint.2019.00024. eCollection 2019. PubMed PMID: 31417372; PubMed Central PMCID: PMC6650594.

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Peters JM, Struyven RR, Prohl AK, Vasung L, Stajduhar A, Taquet M, Bushman JJ, Lidov H, Singh JM, Scherrer B, Madsen JR, Prabhu SP, Sahin M, Afacan O, Warfield SK. White matter mean diffusivity correlates with myelination in tuberous sclerosis complex. Ann Clin Transl Neurol. 2019 Jul;6(7):1178-1190. doi: 10.1002/acn3.793. Epub 2019 Jun 23. PubMed PMID: 31353853; PubMed Central PMCID: PMC6649396.

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Farach LS, Pearson DA, Woodhouse JP, Schraw JM, Sahin M, Krueger DA, Wu JY, Bebin EM, Lupo PJ, Au KS, Northrup H. Tuberous Sclerosis Complex Genotypes and Developmental Phenotype. Pediatr Neurol. 2019 Jul;96:58-63. doi: 10.1016/j.pediatrneurol.2019.03.003. Epub 2019 Mar 13. PubMed PMID: 31005478; PubMed Central PMCID: PMC6837240.

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Marami B, Scherrer B, Khan S, Afacan O, Prabhu SP, Sahin M, Warfield SK, Gholipour A. Motion-robust diffusion compartment imaging using simultaneous multi-slice acquisition. Magn Reson Med. 2019 May;81(5):3314-3329. doi: 10.1002/mrm.27613. Epub 2018 Nov 16. PubMed PMID: 30443929; PubMed Central PMCID: PMC6414287.

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Srivastava S, Scherrer B, Prohl AK, Filip-Dhima R, Kapur K, Kolevzon A, Buxbaum JD, Berry-Kravis E, Soorya L, Thurm A, Powell CM, Bernstein JA, Warfield SK, Sahin M. Volumetric Analysis of the Basal Ganglia and Cerebellar Structures in Patients with Phelan-McDermid Syndrome. Pediatr Neurol. 2019 Jan;90:37-43. doi: 10.1016/j.pediatrneurol.2018.09.008. Epub 2018 Sep 21. PubMed PMID: 30396833; PubMed Central PMCID: PMC6309632.

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Rensonnet G, Scherrer B, Girard G, Jankovski A, Warfield SK, Macq B, Thiran JP, Taquet M. Towards microstructure fingerprinting: Estimation of tissue properties from a dictionary of Monte Carlo diffusion MRI simulations. Neuroimage. 2019 Jan 1;184:964-980. doi: 10.1016/j.neuroimage.2018.09.076. Epub 2018 Sep 30. PubMed PMID: 30282007; PubMed Central PMCID: PMC6230496.

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Peters JM, Prohl A, Kapur K, Nath A, Scherrer B, Clancy S, Prabhu SP, Sahin M, Franz DN, Warfield SK, Krueger DA. Longitudinal Effects of Everolimus on White Matter Diffusion in Tuberous Sclerosis Complex. Pediatr Neurol. 2019 Jan;90:24-30. doi: 10.1016/j.pediatrneurol.2018.10.005. Epub 2018 Oct 18. PubMed PMID: 30424962; PubMed Central PMCID: PMC6314307.

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Hussain SA, Schmid E, Peters JM, Goyal M, Bebin EM, Northrup H, Sahin M, Krueger DA, Wu JY. High vigabatrin dosage is associated with lower risk of infantile spasms relapse among children with tuberous sclerosis complex. Epilepsy Res. 2018 Dec;148:1-7. doi: 10.1016/j.eplepsyres.2018.09.016. Epub 2018 Oct 2. PubMed PMID: 30296632; PubMed Central PMCID: PMC6347124.

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Baumer FM, Peters JM, Clancy S, Prohl AK, Prabhu SP, Scherrer B, Jansen FE, Braun KPJ, Sahin M, Stamm A, Warfield SK. Corpus Callosum White Matter Diffusivity Reflects Cumulative Neurological Comorbidity in Tuberous Sclerosis Complex. Cereb Cortex. 2018 Oct 1;28(10):3665-3672. doi: 10.1093/cercor/bhx247. PubMed PMID: 29939236; PubMed Central PMCID: PMC6132277.

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Srivastava S, Prohl AK, Scherrer B, Kapur K, Krueger DA, Warfield SK, Sahin M. Cerebellar volume as an imaging marker of development in infants with tuberous sclerosis complex. Neurology. 2018 Apr 24;90(17):e1493-e1500. doi: 10.1212/WNL.0000000000005352. Epub 2018 Mar 23. PubMed PMID: 29572283; PubMed Central PMCID: PMC5921037.

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Rensonnet G, Scherrer B, Warfield SK, Macq B, Taquet M. Assessing the validity of the approximation of diffusion-weighted-MRI signals from crossing fascicles by sums of signals from single fascicles. Magn Reson Med. 2018 Apr;79(4):2332-2345. doi: 10.1002/mrm.26832. Epub 2017 Jul 16. PubMed PMID: 28714064; PubMed Central PMCID: PMC5770244.

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MacDougall RD, Scherrer B, Don S. Development of a tool to aid the radiologic technologist using augmented reality and computer vision. Pediatr Radiol. 2018 Jan;48(1):141-145. doi: 10.1007/s00247-017-3968-9. Epub 2017 Sep 2. Review. PubMed PMID: 28866805.

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Eaton-Rosen Z, Scherrer B, Melbourne A, Ourselin S, Neil JJ, Warfield SK. Investigating the maturation of microstructure and radial orientation in the preterm human cortex with diffusion MRI. Neuroimage. 2017 Nov 15;162:65-72. doi: 10.1016/j.neuroimage.2017.08.013. Epub 2017 Aug 8. PubMed PMID: 28801253.

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Marami B, Mohseni Salehi SS, Afacan O, Scherrer B, Rollins CK, Yang E, Estroff JA, Warfield SK, Gholipour A. Temporal slice registration and robust diffusion-tensor reconstruction for improved fetal brain structural connectivity analysis. Neuroimage. 2017 Aug 1;156:475-488. doi: 10.1016/j.neuroimage.2017.04.033. Epub 2017 Apr 19. PubMed PMID: 28433624; PubMed Central PMCID: PMC5548611.

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Hedouin R, Commowick O, Bannier E, Scherrer B, Taquet M, Warfield SK, Barillot C. Block-Matching Distortion Correction of Echo-Planar Images With Opposite Phase Encoding Directions. IEEE Trans Med Imaging. 2017 May;36(5):1106-1115. doi: 10.1109/TMI.2016.2646920. Epub 2017 Jan 9. PubMed PMID: 28092527.

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Chamberland M, Scherrer B, Prabhu SP, Madsen J, Fortin D, Whittingstall K, Descoteaux M, Warfield SK. Active delineation of Meyer's loop using oriented priors through MAGNEtic tractography (MAGNET). Hum Brain Mapp. 2017 Jan;38(1):509-527. doi: 10.1002/hbm.23399. Epub 2016 Sep 20. PubMed PMID: 27647682; PubMed Central PMCID: PMC5333642.

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Marami B, Scherrer B, Afacan O, Warfield SK, Gholipour A. Motion-Robust Reconstruction based on Simultaneous Multi-Slice Registration for Diffusion-Weighted MRI of Moving Subjects. Med Image Comput Comput Assist Interv. 2016 Oct;9902:544-552. doi: 10.1007/978-3-319-46726-9_63. Epub 2016 Oct 2. PubMed PMID: 28127590; PubMed Central PMCID: PMC5257341.

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Marami B, Scherrer B, Afacan O, Erem B, Warfield SK, Gholipour A. Motion-Robust Diffusion-Weighted Brain MRI Reconstruction Through Slice-Level Registration-Based Motion Tracking. IEEE Trans Med Imaging. 2016 Oct;35(10):2258-2269. doi: 10.1109/TMI.2016.2555244. PubMed PMID: 27834639; PubMed Central PMCID: PMC5108524.

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Scherrer B, Schwartzman A, Taquet M, Sahin M, Prabhu SP, Warfield SK. Characterizing brain tissue by assessment of the distribution of anisotropic microstructural environments in diffusion-compartment imaging (DIAMOND). Magn Reson Med. 2016 Sep;76(3):963-77. doi: 10.1002/mrm.25912. Epub 2015 Sep 12. PubMed PMID: 26362832; PubMed Central PMCID: PMC4788987.

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Gholipour A, Afacan O, Aganj I, Scherrer B, Prabhu SP, Sahin M, Warfield SK. Super-resolution reconstruction in frequency, image, and wavelet domains to reduce through-plane partial voluming in MRI. Med Phys. 2015 Dec;42(12):6919-32. doi: 10.1118/1.4935149. PubMed PMID: 26632048; PubMed Central PMCID: PMC4644155.

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Taquet M, Scherrer B, Boumal N, Peters JM, Macq B, Warfield SK. Improved fidelity of brain microstructure mapping from single-shell diffusion MRI. Med Image Anal. 2015 Dec;26(1):268-86. doi: 10.1016/j.media.2015.10.004. Epub 2015 Oct 22. PubMed PMID: 26529580; PubMed Central PMCID: PMC4679640.

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Peters JM, Prohl AK, Tomas-Fernandez XK, Taquet M, Scherrer B, Prabhu SP, Lidov HG, Singh JM, Jansen FE, Braun KP, Sahin M, Warfield SK, Stamm A. Tubers are neither static nor discrete: Evidence from serial diffusion tensor imaging. Neurology. 2015 Nov 3;85(18):1536-45. doi: 10.1212/WNL.0000000000002055. Epub 2015 Oct 2. PubMed PMID: 26432846; PubMed Central PMCID: PMC4642145.

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Scherrer B, Afacan O, Taquet M, Prabhu SP, Gholipour A, Warfield SK. Accelerated High Spatial Resolution Diffusion-Weighted Imaging. Inf Process Med Imaging. 2015;24:69-81. doi: 10.1007/978-3-319-19992-4_6. PubMed PMID: 26167096; PubMed Central PMCID: PMC4495974.

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Taquet M, Scherrer B, Commowick O, Peters JM, Sahin M, Macq B, Warfield SK. A mathematical framework for the registration and analysis of multi-fascicle models for population studies of the brain microstructure. IEEE Trans Med Imaging. 2014 Feb;33(2):504-17. doi: 10.1109/TMI.2013.2289381. Epub 2013 Nov 6. PubMed PMID: 24235301; PubMed Central PMCID: PMC3984609.

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Taquet M, Scherrer B, Peters JM, Prabhu SP, Warfield SK. A fully Bayesian inference framework for population studies of the brain microstructure. Med Image Comput Comput Assist Interv. 2014;17(Pt 1):25-32. doi: 10.1007/978-3-319-10404-1_4. PubMed PMID: 25333097; PubMed Central PMCID: PMC4209905.

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Hammond DK, Scherrer B, Warfield SK. Cortical graph smoothing: a novel method for exploiting DWI-derived anatomical brain connectivity to improve EEG source estimation. IEEE Trans Med Imaging. 2013 Oct;32(10):1952-63. doi: 10.1109/TMI.2013.2271486. Epub 2013 Jun 27. PubMed PMID: 23807436; PubMed Central PMCID: PMC3901841.

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Peters JM, Taquet M, Prohl AK, Scherrer B, van Eeghen AM, Prabhu SP, Sahin M, Warfield SK. Diffusion tensor imaging and related techniques in tuberous sclerosis complex: review and future directions. Future Neurol. 2013 Sep;8(5):583-597. doi: 10.2217/fnl.13.37. PubMed PMID: 24489482; PubMed Central PMCID: PMC3904372.

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Lewis WW, Sahin M, Scherrer B, Peters JM, Suarez RO, Vogel-Farley VK, Jeste SS, Gregas MC, Prabhu SP, Nelson CA 3rd, Warfield SK. Impaired language pathways in tuberous sclerosis complex patients with autism spectrum disorders. Cereb Cortex. 2013 Jul;23(7):1526-32. doi: 10.1093/cercor/bhs135. Epub 2012 Jun 1. PubMed PMID: 22661408; PubMed Central PMCID: PMC3673171.

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Scherrer B, Taquet M, Warfield SK. Reliable selection of the number of fascicles in diffusion images by estimation of the generalization error. Inf Process Med Imaging. 2013;23:742-53. doi: 10.1007/978-3-642-38868-2_62. PubMed PMID: 24684014; PubMed Central PMCID: PMC4138217.

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Taquet M, Scherrer B, Boumal N, Macq B, Warfield SK. Estimation of a multi-fascicle model from single B-value data with a population-informed prior. Med Image Comput Comput Assist Interv. 2013;16(Pt 1):695-702. doi: 10.1007/978-3-642-40811-3_87. PubMed PMID: 24505728; PubMed Central PMCID: PMC4029842.

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Scherrer B, Schwartzman A, Taquet M, Prabhu SP, Sahin M, Akhondi-Asl A, Warfield SK. Characterizing the distribution of anisotropic micro-structural environments with diffusion-weighted imaging (DIAMOND). Med Image Comput Comput Assist Interv. 2013;16(Pt 3):518-26. doi: 10.1007/978-3-642-40760-4_65. PubMed PMID: 24505801; PubMed Central PMCID: PMC4029840.

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Scherrer B, Warfield SK. Parametric representation of multiple white matter fascicles from cube and sphere diffusion MRI. PLoS One. 2012;7(11):e48232. doi: 10.1371/journal.pone.0048232. Epub 2012 Nov 26. PubMed PMID: 23189128; PubMed Central PMCID: PMC3506641.