My Bibliography

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Nalawade SS, Yu FF, Yogananda CGB, Murugesan GK, Shah BR, Pinho MC, Wagner BC, Xi Y, Mickey B, Patel TR, Fei B, Madhuranthakam AJ, Maldjian JA. Errata: Brain tumor IDH, 1p/19q, and MGMT molecular classification using MRI-based deep learning: an initial study on the effect of motion and motion correction. J Med Imaging (Bellingham). 2023 Jan;10(1):019801. doi: 10.1117/1.JMI.10.1.019801. Epub 2023 Jan 31. PubMed PMID: 36761698; PubMed Central PMCID: PMC9888547.

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Kono T, Onohara D, Amedi A, Corporan D, Padala M. Effect of early versus late onset mitral regurgitation on left ventricular remodeling in ischemic cardiomyopathy in an animal model. J Thorac Cardiovasc Surg. 2022 Dec;164(6):e333-e347. doi: 10.1016/j.jtcvs.2021.11.024. Epub 2021 Nov 16. PubMed PMID: 34903384; PubMed Central PMCID: PMC9108127.

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Nayar NU, Qi R, Desai JP. Towards the Design and Development of a Robotic Transcatheter Delivery System for Mitral Valve Implant. IEEE Trans Med Robot Bionics. 2022 Nov;4(4):922-934. doi: 10.1109/tmrb.2022.3215522. Epub 2022 Oct 19. PubMed PMID: 37214350; PubMed Central PMCID: PMC10198124.

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Xu D, McBride E, Kalra K, Wong K, Guyton RA, Sarin EL, Padala M. Undersizing mitral annuloplasty alters left ventricular mechanics in a swine model of ischemic mitral regurgitation. J Thorac Cardiovasc Surg. 2022 Sep;164(3):850-861.e8. doi: 10.1016/j.jtcvs.2020.09.141. Epub 2020 Nov 6. PubMed PMID: 33288234; PubMed Central PMCID: PMC8099928.

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Reilly CM, Higgins M, Butler J, Esiashvili N, Fei B, Flynn T, Dormer JD, Schreibmann E. The Contribution of Thoracic Radiation Dose Volumes to Subsequent Development of Cardiovascular Disease in Cancer Survivors. J Cardiovasc Nurs. 2022 Sep-Oct 01;37(5):E129-E138. doi: 10.1097/JCN.0000000000000834. PubMed PMID: 34238842; PubMed Central PMCID: PMC8733046.

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Amedi A, Onohara D, Xu D, Suresh KS, Padala M. Hemodynamic outcomes after undersizing ring annuloplasty and focal suture annuloplasty for surgical repair of functional tricuspid regurgitation. J Thorac Cardiovasc Surg. 2022 Jul;164(1):76-87.e1. doi: 10.1016/j.jtcvs.2020.08.085. Epub 2020 Sep 2. PubMed PMID: 33041065; PubMed Central PMCID: PMC7921216.

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Onohara D, Corporan DM, Kono T, Kumar S, Guyton RA, Padala M. Ventricular reshaping with a beating heart implant improves pump function in experimental heart failure. J Thorac Cardiovasc Surg. 2022 May;163(5):e343-e355. doi: 10.1016/j.jtcvs.2020.08.097. Epub 2020 Sep 3. PubMed PMID: 33046233; PubMed Central PMCID: PMC7925703.

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Ma L, Rathgeb A, Mubarak H, Tran M, Fei B. Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging. J Biomed Opt. 2022 May;27(5). doi: 10.1117/1.JBO.27.5.056502. PubMed PMID: 35578386; PubMed Central PMCID: PMC9110022.

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Ma L, Rathgeb A, Mubarak H, Tran M, Fei B. Unsupervised super-resolution reconstruction of hyperspectral histology images for whole-slide imaging (Errata). J Biomed Opt. 2022 May;27(5). doi: 10.1117/1.JBO.27.5.059801. PubMed PMID: 35606899; PubMed Central PMCID: PMC9125328.

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Ma L, Little JV, Chen AY, Myers L, Sumer BD, Fei B. Automatic detection of head and neck squamous cell carcinoma on histologic slides using hyperspectral microscopic imaging (Erratum). J Biomed Opt. 2022 May;27(5). doi: 10.1117/1.JBO.27.5.059802. PubMed PMID: 35643935; PubMed Central PMCID: PMC9142838.

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Young J, Shahedi M, Dormer JD, Johnson B, Gahan J, Fei B. A low-cost PVC-based dual-modality kidney phantom. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12034. doi: 10.1117/12.2611592. Epub 2022 Apr 4. PubMed PMID: 36793656; PubMed Central PMCID: PMC9928528.

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Shi T, Shahedi M, Caughlin K, Dormer JD, Ma L, Fei B. Semi-automated three-dimensional segmentation for cardiac CT images using deep learning and randomly distributed points. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12034. doi: 10.1117/12.2611594. Epub 2022 Apr 4. PubMed PMID: 36793655; PubMed Central PMCID: PMC9928521.

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Huang J, Guo J, Pedrosa I, Fei B. Deep Learning-based Deformable Registration of Dynamic Contrast-Enhanced MR Images of the Kidney. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12034. doi: 10.1117/12.2611768. Epub 2022 Apr 4. PubMed PMID: 36793654; PubMed Central PMCID: PMC9928502.

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Tran MH, Ma L, Litter JV, Chen AY, Fei B. Thyroid Carcinoma Detection on Whole Histologic Slides Using Hyperspectral Imaging and Deep Learning. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12039. doi: 10.1117/12.2612963. Epub 2022 Apr 4. PubMed PMID: 36798939; PubMed Central PMCID: PMC9929647.

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Dormer JD, Villordon M, Shahedi M, Leitch K, Do QN, Xi Y, Lewis MA, Madhuranthakam AJ, Herrera CL, Spong CY, Twickler DM, Fei B. CascadeNet for hysterectomy prediction in pregnant women due to placenta accreta spectrum. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12032. doi: 10.1117/12.2611580. Epub 2022 Apr 4. PubMed PMID: 36798853; PubMed Central PMCID: PMC9929645.

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Ma L, Rathgeb A, Tran M, Fei B. Unsupervised Super Resolution Network for Hyperspectral Histologic Imaging. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12039. doi: 10.1117/12.2611889. Epub 2022 Apr 4. PubMed PMID: 36793770; PubMed Central PMCID: PMC9928529.

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Shahedi M, Dormer JD, Do QN, Xi Y, Lewis MA, Herrera CL, Spong CY, Madhuranthakam AJ, Twickler DM, Fei B. Automatic Segmentation of Uterine Cavity and Placenta on MR Images Using Deep Learning. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12036. doi: 10.1117/12.2613286. Epub 2022 Apr 4. PubMed PMID: 36798450; PubMed Central PMCID: PMC9929634.

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Pathour T, Akter N, Dormer JD, Chaudhary S, Fei B, Sirsi S. Identifying Unique Acoustic Signatures from Chemically-Crosslinked Microbubble Clusters Using Deep Learning. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12038. doi: 10.1117/12.2611572. Epub 2022 Apr 4. PubMed PMID: 36793945; PubMed Central PMCID: PMC9928530.

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Bettati P, Dormer JD, Shahedi M, Fei B. An Augmented Reality-Assisted Visualization System for Potential Applications in Prostate Biopsy. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12034. doi: 10.1117/12.2611590. Epub 2022 Apr 4. PubMed PMID: 36793657; PubMed Central PMCID: PMC9928501.

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Zhou X, Ma L, Mubarak HK, Little JV, Chen AY, Myers LL, Sumer BD, Fei B. Automatic detection of head and neck squamous cell carcinoma on pathologic slides using polarized hyperspectral imaging and deep learning. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12039. doi: 10.1117/12.2614624. Epub 2022 Apr 4. PubMed PMID: 36798940; PubMed Central PMCID: PMC9930132.

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Leitch K, Halicek M, Shahedi M, Little JV, Chen AY, Fei B. Detecting Aggressive Papillary Thyroid Carcinoma Using Hyperspectral Imaging and Radiomic Features. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12033. doi: 10.1117/12.2611842. Epub 2022 Apr 4. PubMed PMID: 36798628; PubMed Central PMCID: PMC9929637.

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Leitch K, Shahedi M, Dormer JD, Do QN, Xi Y, Lewis MA, Herrera CL, Spong CY, Madhuranthakam AJ, Twickler DM, Fei B. Placenta Accreta Spectrum and Hysterectomy Prediction Using MRI Radiomic Features. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12033. doi: 10.1117/12.2611587. Epub 2022 Apr 4. PubMed PMID: 36844110; PubMed Central PMCID: PMC9956938.

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Chaudhary U, Leitch KN, Chhabra A, Kohli A, Fei B. Deep Learning-Based Abdominal Muscle Segmentation on CT Images of Surgical Patient Populations. Proc SPIE Int Soc Opt Eng. 2022 Feb-Mar;12036. doi: 10.1117/12.2611773. Epub 2022 Apr 4. PubMed PMID: 36845411; PubMed Central PMCID: PMC9956918.

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Ma L, Little JV, Chen AY, Myers L, Sumer BD, Fei B. Automatic detection of head and neck squamous cell carcinoma on histologic slides using hyperspectral microscopic imaging. J Biomed Opt. 2022 Apr;27(4). doi: 10.1117/1.JBO.27.4.046501. PubMed PMID: 35484692; PubMed Central PMCID: PMC9050479.

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Modir N, Shahedi M, Dormer J, Ma L, Ghaderi M, Sirsi S, Cheng YL, Fei B. LED-based Hyperspectral Endoscopic Imaging. Proc SPIE Int Soc Opt Eng. 2022 Jan-Feb;11954. doi: 10.1117/12.2609023. Epub 2022 Mar 2. PubMed PMID: 36794092; PubMed Central PMCID: PMC9928531.

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Ayala L, Isensee F, Wirkert SJ, Vemuri AS, Maier-Hein KH, Fei B, Maier-Hein L. Band selection for oxygenation estimation with multispectral/hyperspectral imaging. Biomed Opt Express. 2022 Mar 1;13(3):1224-1242. doi: 10.1364/BOE.441214. eCollection 2022 Mar 1. PubMed PMID: 35414995; PubMed Central PMCID: PMC8973188.

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Selim M, Zhang J, Fei B, Zhang GQ, Ge GY, Chen J. Cross-Vendor CT Image Data Harmonization Using CVH-CT. AMIA Annu Symp Proc. 2021;2021:1099-1108. eCollection 2021. PubMed PMID: 35308983; PubMed Central PMCID: PMC8861670.

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Shahedi M, Dormer JD, Halicek M, Fei B. Technical note: The effect of image annotation with minimal manual interaction for semiautomatic prostate segmentation in CT images using fully convolutional neural networks. Med Phys. 2022 Feb;49(2):1153-1160. doi: 10.1002/mp.15404. Epub 2021 Dec 22. PubMed PMID: 34902166; PubMed Central PMCID: PMC10014149.

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Nalawade SS, Yu FF, Bangalore Yogananda CG, Murugesan GK, Shah BR, Pinho MC, Wagner BC, Xi Y, Mickey B, Patel TR, Fei B, Madhuranthakam AJ, Maldjian JA. Brain tumor IDH, 1p/19q, and MGMT molecular classification using MRI-based deep learning: an initial study on the effect of motion and motion correction. J Med Imaging (Bellingham). 2022 Jan;9(1):016001. doi: 10.1117/1.JMI.9.1.016001. Epub 2022 Jan 27. PubMed PMID: 35118164; PubMed Central PMCID: PMC8794036.

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Ravigopal SR, Nayar NU, Desai JP. Towards Real-time pose estimation of the Mitral Valve Robot under C-arm X-ray Fluoroscopy. IEEE Trans Med Robot Bionics. 2021 Nov;3(4):928-935. doi: 10.1109/tmrb.2021.3122351. Epub 2021 Oct 22. PubMed PMID: 35756715; PubMed Central PMCID: PMC9232099.

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Shahedi M, Spong CY, Dormer JD, Do QN, Xi Y, Lewis MA, Herrera C, Madhuranthakam AJ, Twickler DM, Fei B. Deep learning-based segmentation of the placenta and uterus on MR images. J Med Imaging (Bellingham). 2021 Sep;8(5):054001. doi: 10.1117/1.JMI.8.5.054001. Epub 2021 Sep 25. PubMed PMID: 34589556; PubMed Central PMCID: PMC8463933.

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Shahedi M, Spong C, Dormer J, Do Q, Xi Y, Lewis M, Herrera C, Madhuranthakam A, Twickler D, Fei B. Deep learning-based segmentation of the placenta and uterus on MR images. Journal of Medical Imaging. 2021-9-; 8(05):-. doi: 10.1117/1.JMI.8.5.054001.

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Zhan-Moodie S, Xu D, Suresh KS, He Q, Onohara D, Kalra K, Guyton RA, Sarin EL, Padala M. Papillary Muscle Approximation Reduces Systolic Tethering Forces and Improves Mitral Valve Closure in the Repair of Functional Mitral Regurgitation. JTCVS Open. 2021 Sep;7:91-104. doi: 10.1016/j.xjon.2021.04.008. Epub 2021 Apr 28. PubMed PMID: 35299626; PubMed Central PMCID: PMC8924981.

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Shabestri B, Anastasio M, Fei B, Leblond F. Special Series Guest Editorial: Artificial Intelligence and Machine Learning in Biomedical Optics. Journal of Biomedical Optics. 2021-5-; 26(05):-. doi: 10.1117/1.JBO.26.5.052901.

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Shabestri B, Anastasio MA, Fei B, Leblond F. Special Series Guest Editorial: Artificial Intelligence and Machine Learning in Biomedical Optics. J Biomed Opt. 2021 May;26(5). doi: 10.1117/1.JBO.26.5.052901. PubMed PMID: 33973425; PubMed Central PMCID: PMC8109026.

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Yogananda CGB, Shah BR, Nalawade SS, Murugesan GK, Yu FF, Pinho MC, Wagner BC, Mickey B, Patel TR, Fei B, Madhuranthakam AJ, Maldjian JA. MRI-Based Deep-Learning Method for Determining Glioma MGMT Promoter Methylation Status. AJNR Am J Neuroradiol. 2021 May;42(5):845-852. doi: 10.3174/ajnr.A7029. Epub 2021 Mar 4. PubMed PMID: 33664111; PubMed Central PMCID: PMC8115363.

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Ma L, Shahedi M, Shi T, Halicek M, Little J, Chen A, Myers L, Sumer B, Fei B. Pixel-level tumor margin assessment of surgical specimen in hyperspectral imaging and deep learning classification. In: Linte C, Siewerdsen J, editors. Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling. Image-Guided Procedures, Robotic Interventions, and Modeling; ; Online Only, United States. SPIE; c2021.

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Xi Y, Shahedi M, Do Q, Dormer J, Lewis M, Fei B, Spong C, Madhuranthakam A, Twickler D. Assessing reproducibility in magnetic resonance (MR) radiomics features between deep-learning segmented and expert manual segmented data and evaluating their diagnostic performance in pregnant women with suspected placenta accreta spectrum (PAS). In: Drukker K, Mazurowski M, editors. Medical Imaging 2021: Computer-Aided Diagnosis. Computer-Aided Diagnosis; ; Online Only, United States. SPIE; c2021.

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Wan C, Ma L, Liu X, Fei B. Computer-aided classification of lung nodules on CT images with expert knowledge. In: Linte C, Siewerdsen J, editors. Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling. Image-Guided Procedures, Robotic Interventions, and Modeling; ; Online Only, United States. SPIE; c2021.

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Tao L, Ma L, Xie M, Liu X, Tian Z, Fei B. Automatic segmentation of the prostate on MR images based on anatomy and deep learning. In: Linte C, Siewerdsen J, editors. Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling. Image-Guided Procedures, Robotic Interventions, and Modeling; ; Online Only, United States. SPIE; c2021.

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Yociss M, Fei B. GPU-based simulation of plane wave echocardiography with view-dependent speckle using optical ray tracing. In: Ruiter N, Byram B, editors. Medical Imaging 2021: Ultrasonic Imaging and Tomography. Ultrasonic Imaging and Tomography; ; Online Only, United States. SPIE; c2021.

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Caughlin K, Shahedi M, Shoag J, Barbieri C, Margolis D, Fei B. Three-dimensional prostate CT segmentation through fine-tuning of a pre-trained neural network using no reference labeling. In: Linte C, Siewerdsen J, editors. Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling. Image-Guided Procedures, Robotic Interventions, and Modeling; ; Online Only, United States. SPIE; c2021.

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Ma L, Zhou X, Little J, Chen A, Myers L, Sumer B, Fei B. Hyperspectral microscopic imaging for head and neck squamous cell carcinoma detection in histologic images. In: Tomaszewski J, Ward A, editors. Medical Imaging 2021: Digital Pathology. Digital and Computational Pathology; ; Online Only, United States. SPIE; c2021.

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Bettati P, Dormer J, Young J, Shahedi M, Fei B. Virtual reality assisted cardiac catheterization. In: Linte C, Siewerdsen J, editors. Medical Imaging 2021: Image-Guided Procedures, Robotic Interventions, and Modeling. Image-Guided Procedures, Robotic Interventions, and Modeling; ; Online Only, United States. SPIE; c2021.

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Edwards K, Halicek M, Little J, Chen A, Fei B. Multiparametric radiomics for predicting the aggressiveness of papillary thyroid carcinoma using hyperspectral images. In: Drukker K, Mazurowski M, editors. Medical Imaging 2021: Computer-Aided Diagnosis. Computer-Aided Diagnosis; ; Online Only, United States. SPIE; c2021.

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Zhou X, Ma L, Brown W, Little J, Chen A, Myers L, Sumer B, Fei B. Automatic detection of head and neck squamous cell carcinoma on pathologic slides using polarized hyperspectral imaging and machine learning. In: Tomaszewski J, Ward A, editors. Medical Imaging 2021: Digital Pathology. Digital and Computational Pathology; ; Online Only, United States. SPIE; c2021.

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MacDonald TJ, Liu J, Yu B, Malhotra A, Munson J, Park JC, Wang K, Fei B, Bellamkonda R, Arbiser J. Liposome-Imipramine Blue Inhibits Sonic Hedgehog Medulloblastoma In Vivo. Cancers (Basel). 2021 Mar 11;13(6). doi: 10.3390/cancers13061220. PubMed PMID: 33799550; PubMed Central PMCID: PMC8001973.

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MacDonald T, Liu J, Yu B, Malhotra A, Munson J, Park J, Wang K, Fei B, Bellamkonda R, Arbiser J. Liposome-Imipramine Blue Inhibits Sonic Hedgehog Medulloblastoma In Vivo. Cancers. 2021 March; 13(6):1220-. doi: 10.3390/cancers13061220.

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Modir N, Shahedi M, Dormer J, Fei B. Development of a real-time spectral imaging system using in-site micro-LED-based illumination and high-speed micro-camera for endoscopic applications. Proc SPIE Int Soc Opt Eng. 2021 Mar;11654. doi: 10.1117/12.2579097. Epub 2021 Mar 5. PubMed PMID: 35784009; PubMed Central PMCID: PMC9248909.

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Corporan D, Onohara D, Amedi A, Saadeh M, Guyton RA, Kumar S, Padala M. Hemodynamic and transcriptomic studies suggest early left ventricular dysfunction in a preclinical model of severe mitral regurgitation. J Thorac Cardiovasc Surg. 2021 Mar;161(3):961-976.e22. doi: 10.1016/j.jtcvs.2020.08.119. Epub 2020 Oct 8. PubMed PMID: 33277035; PubMed Central PMCID: PMC7889661.