My Bibliography

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Keizer VIP, Grosse-Holz S, Woringer M, Zambon L, Aizel K, Bongaerts M, Delille F, Kolar-Znika L, Scolari VF, Hoffmann S, Banigan EJ, Mirny LA, Dahan M, Fachinetti D, Coulon A. Live-cell micromanipulation of a genomic locus reveals interphase chromatin mechanics. Science. 2022 Jul 29;377(6605):489-495. doi: 10.1126/science.abi9810. Epub 2022 Jul 28. PubMed PMID: 35901134.

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Vibert J, Saulnier O, Collin C, Petit F, Borgman KJE, Vigneau J, Gautier M, Zaidi S, Pierron G, Watson S, Gruel N, Hénon C, Postel-Vinay S, Deloger M, Raynal V, Baulande S, Laud-Duval K, Hill V, Grossetête S, Dingli F, Loew D, Torrejon J, Ayrault O, Orth MF, Grünewald TGP, Surdez D, Coulon A, Waterfall JJ, Delattre O. Oncogenic chimeric transcription factors drive tumor-specific transcription, processing, and translation of silent genomic regions. Mol Cell. 2022 Jul 7;82(13):2458-2471.e9. doi: 10.1016/j.molcel.2022.04.019. Epub 2022 May 11. PubMed PMID: 35550257.

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Nora EP, Caccianini L, Fudenberg G, So K, Kameswaran V, Nagle A, Uebersohn A, Hajj B, Saux AL, Coulon A, Mirny LA, Pollard KS, Dahan M, Bruneau BG. Molecular basis of CTCF binding polarity in genome folding. Nat Commun. 2020 Nov 5;11(1):5612. doi: 10.1038/s41467-020-19283-x. PubMed PMID: 33154377; PubMed Central PMCID: PMC7645679.

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Torné J, Ray-Gallet D, Boyarchuk E, Garnier M, Le Baccon P, Coulon A, Orsi GA, Almouzni G. Two HIRA-dependent pathways mediate H3.3 de novo deposition and recycling during transcription. Nat Struct Mol Biol. 2020 Nov;27(11):1057-1068. doi: 10.1038/s41594-020-0492-7. Epub 2020 Sep 7. PubMed PMID: 32895554.

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Coulon A, Larson DR. Fluctuation Analysis: Dissecting Transcriptional Kinetics with Signal Theory. Methods Enzymol. 2016;572:159-91. doi: 10.1016/bs.mie.2016.03.017. Epub 2016 Apr 12. PubMed PMID: 27241754; PubMed Central PMCID: PMC6300985.

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Day CR, Chen H, Coulon A, Meier JL, Larson DR. High-throughput single-molecule screen for small-molecule perturbation of splicing and transcription kinetics. Methods. 2016 Mar 1;96:59-68. doi: 10.1016/j.ymeth.2015.11.025. Epub 2015 Nov 30. PubMed PMID: 26655523; PubMed Central PMCID: PMC4766052.

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Lenstra TL, Coulon A, Chow CC, Larson DR. Single-Molecule Imaging Reveals a Switch between Spurious and Functional ncRNA Transcription. Mol Cell. 2015 Nov 19;60(4):597-610. doi: 10.1016/j.molcel.2015.09.028. Epub 2015 Nov 5. PubMed PMID: 26549684; PubMed Central PMCID: PMC4656089.

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Stavreva DA, Coulon A, Baek S, Sung MH, John S, Stixova L, Tesikova M, Hakim O, Miranda T, Hawkins M, Stamatoyannopoulos JA, Chow CC, Hager GL. Dynamics of chromatin accessibility and long-range interactions in response to glucocorticoid pulsing. Genome Res. 2015 Jun;25(6):845-57. doi: 10.1101/gr.184168.114. Epub 2015 Feb 12. PubMed PMID: 25677181; PubMed Central PMCID: PMC4448681.

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Coulon A, Ferguson ML, de Turris V, Palangat M, Chow CC, Larson DR. Kinetic competition during the transcription cycle results in stochastic RNA processing. Elife. 2014 Oct 1;3. doi: 10.7554/eLife.03939. PubMed PMID: 25271374; PubMed Central PMCID: PMC4210818.

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Coulon A, Chow CC, Singer RH, Larson DR. Eukaryotic transcriptional dynamics: from single molecules to cell populations. Nat Rev Genet. 2013 Aug;14(8):572-84. doi: 10.1038/nrg3484. Epub 2013 Jul 9. Review. PubMed PMID: 23835438; PubMed Central PMCID: PMC3807637.

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Viñuelas J, Kaneko G, Coulon A, Vallin E, Morin V, Mejia-Pous C, Kupiec JJ, Beslon G, Gandrillon O. Quantifying the contribution of chromatin dynamics to stochastic gene expression reveals long, locus-dependent periods between transcriptional bursts. BMC Biol. 2013 Feb 25;11:15. doi: 10.1186/1741-7007-11-15. PubMed PMID: 23442824; PubMed Central PMCID: PMC3635915.

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Viñuelas J, Kaneko G, Coulon A, Beslon G, Gandrillon O. Towards experimental manipulation of stochasticity in gene expression. Prog Biophys Mol Biol. 2012 Sep;110(1):44-53. doi: 10.1016/j.pbiomolbio.2012.04.010. Epub 2012 May 16. PubMed PMID: 22609563.

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Soula HA, Coulon A, Beslon G. Membrane microdomains emergence through non-homogeneous diffusion. BMC Biophys. 2012 Apr 30;5:6. doi: 10.1186/2046-1682-5-6. PubMed PMID: 22546236; PubMed Central PMCID: PMC3528627.

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Coulon A, Beslon G, Soula HA. Enhanced stimulus encoding capabilities with spectral selectivity in inhibitory circuits by STDP. Neural Comput. 2011 Apr;23(4):882-908. doi: 10.1162/NECO_a_00100. Epub 2011 Jan 11. PubMed PMID: 21222530.

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Coulon A, Gandrillon O, Beslon G. On the spontaneous stochastic dynamics of a single gene: complexity of the molecular interplay at the promoter. BMC Syst Biol. 2010 Jan 8;4:2. doi: 10.1186/1752-0509-4-2. PubMed PMID: 20064204; PubMed Central PMCID: PMC2832887.

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Coulon A, Beslon G, Gandrillon O. Large multiprotein structures modeling and simulation: the need for mesoscopic models. Methods Mol Biol. 2008;484:537-58. doi: 10.1007/978-1-59745-398-1_32. PubMed PMID: 18592200.

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Knibbe C, Coulon A, Mazet O, Fayard JM, Beslon G. A long-term evolutionary pressure on the amount of noncoding DNA. Mol Biol Evol. 2007 Oct;24(10):2344-53. doi: 10.1093/molbev/msm165. Epub 2007 Aug 19. PubMed PMID: 17709335.