My Bibliography

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Rowley PA, Smith MC, Younger E, Smith MC. A motif in the C-terminal domain of phiC31 integrase controls the directionality of recombination. Nucleic Acids Res. 2008 Jul;36(12):3879-91. doi: 10.1093/nar/gkn269. Epub 2008 May 23. PubMed PMID: 18502775; PubMed Central PMCID: PMC2475636.

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Rowley PA, Smith MC. Role of the N-terminal domain of phiC31 integrase in attB-attP synapsis. J Bacteriol. 2008 Oct;190(20):6918-21. doi: 10.1128/JB.00612-08. Epub 2008 Aug 8. PubMed PMID: 18689475; PubMed Central PMCID: PMC2566186.

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Ma CH, Rowley PA, Macieszak A, Guga P, Jayaram M. Active site electrostatics protect genome integrity by blocking abortive hydrolysis during DNA recombination. EMBO J. 2009 Jun 17;28(12):1745-56. doi: 10.1038/emboj.2009.131. Epub 2009 May 14. PubMed PMID: 19440204; PubMed Central PMCID: PMC2699359.

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Kachroo AH, Jayaram M, Rowley PA. Metabolic engineering without plasmids. Nat Biotechnol. 2009 Aug;27(8):729-31. doi: 10.1038/nbt0809-729. PubMed PMID: 19668179.

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McEwan AR, Rowley PA, Smith MC. DNA binding and synapsis by the large C-terminal domain of phiC31 integrase. Nucleic Acids Res. 2009 Aug;37(14):4764-73. doi: 10.1093/nar/gkp485. Epub 2009 Jun 10. PubMed PMID: 19515935; PubMed Central PMCID: PMC2724291.

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Smith MC, Brown WR, McEwan AR, Rowley PA. Site-specific recombination by phiC31 integrase and other large serine recombinases. Biochem Soc Trans. 2010 Apr;38(2):388-94. doi: 10.1042/BST0380388. Review. PubMed PMID: 20298189.

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Rowley PA, Kachroo AH, Ma CH, Maciaszek AD, Guga P, Jayaram M. Electrostatic suppression allows tyrosine site-specific recombination in the absence of a conserved catalytic arginine. J Biol Chem. 2010 Jul 23;285(30):22976-85. doi: 10.1074/jbc.M110.112292. Epub 2010 May 6. PubMed PMID: 20448041; PubMed Central PMCID: PMC2906291.

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Kachroo AH, Ma CH, Rowley PA, Maciaszek AD, Guga P, Jayaram M. Restoration of catalytic functions in Cre recombinase mutants by electrostatic compensation between active site and DNA substrate. Nucleic Acids Res. 2010 Oct;38(19):6589-601. doi: 10.1093/nar/gkq466. Epub 2010 May 28. PubMed PMID: 20511594; PubMed Central PMCID: PMC2965224.

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Ma CH, Cui H, Hajra S, Rowley PA, Fekete C, Sarkeshik A, Ghosh SK, Yates JR 3rd, Jayaram M. Temporal sequence and cell cycle cues in the assembly of host factors at the yeast 2 micron plasmid partitioning locus. Nucleic Acids Res. 2013 Feb 1;41(4):2340-53. doi: 10.1093/nar/gks1338. Epub 2012 Dec 28. PubMed PMID: 23275556; PubMed Central PMCID: PMC3575823.

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Ma CH, Liu YT, Savva CG, Rowley PA, Cannon B, Fan HF, Russell R, Holzenburg A, Jayaram M. Organization of DNA partners and strand exchange mechanisms during Flp site-specific recombination analyzed by difference topology, single molecule FRET and single molecule TPM. J Mol Biol. 2014 Feb 20;426(4):793-815. doi: 10.1016/j.jmb.2013.11.017. Epub 2013 Nov 25. PubMed PMID: 24286749.

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Meyerson NR, Rowley PA, Swan CH, Le DT, Wilkerson GK, Sawyer SL. Positive selection of primate genes that promote HIV-1 replication. Virology. 2014 Apr;454-455:291-8. doi: 10.1016/j.virol.2014.02.029. Epub 2014 Mar 21. PubMed PMID: 24725956; PubMed Central PMCID: PMC4028154.

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Liu YT, Sau S, Ma CH, Kachroo AH, Rowley PA, Chang KM, Fan HF, Jayaram M. The partitioning and copy number control systems of the selfish yeast plasmid: an optimized molecular design for stable persistence in host cells. Microbiol Spectr. 2014 Oct;2(5). doi: 10.1128/microbiolspec.PLAS-0003-2013. Review. PubMed PMID: 25541598; PubMed Central PMCID: PMC4274994.

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McBee RM, Rozmiarek SA, Meyerson NR, Rowley PA, Sawyer SL. The effect of species representation on the detection of positive selection in primate gene data sets. Mol Biol Evol. 2015 Apr;32(4):1091-6. doi: 10.1093/molbev/msu399. Epub 2015 Jan 2. PubMed PMID: 25556235; PubMed Central PMCID: PMC4379402.

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Rowley PA, Kachroo AH, Ma CH, Maciaszek AD, Guga P, Jayaram M. Stereospecific suppression of active site mutants by methylphosphonate substituted substrates reveals the stereochemical course of site-specific DNA recombination. Nucleic Acids Res. 2015 Jul 13;43(12):6023-37. doi: 10.1093/nar/gkv513. Epub 2015 May 20. PubMed PMID: 25999343; PubMed Central PMCID: PMC4499138.

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Jayaram M, Ma CH, Kachroo AH, Rowley PA, Guga P, Fan HF, Voziyanov Y. An Overview of Tyrosine Site-specific Recombination: From an Flp Perspective. Microbiol Spectr. 2015 Aug;3(4). doi: 10.1128/microbiolspec.MDNA3-0021-2014. Review. PubMed PMID: 26350308.

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Rowley, P.A.. The hidden viruses of the fungal kingdom. Microbiology Today. 2016; 43(1):26-29.

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Rowley PA, Ho B, Bushong S, Johnson A, Sawyer SL. XRN1 Is a Species-Specific Virus Restriction Factor in Yeasts. PLoS Pathog. 2016 Oct;12(10):e1005890. doi: 10.1371/journal.ppat.1005890. eCollection 2016 Oct. PubMed PMID: 27711183; PubMed Central PMCID: PMC5053509.

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Rowley PA. The frenemies within: viruses, retrotransposons and plasmids that naturally infect Saccharomyces yeasts. Yeast. 2017 Jul;34(7):279-292. doi: 10.1002/yea.3234. Epub 2017 Jun 7. Review. PubMed PMID: 28387035.

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Rowley PA, Patterson K, Sandmeyer SB, Sawyer SL. Control of yeast retrotransposons mediated through nucleoporin evolution. PLoS Genet. 2018 Apr;14(4):e1007325. doi: 10.1371/journal.pgen.1007325. eCollection 2018 Apr. PubMed PMID: 29694349; PubMed Central PMCID: PMC5918913.

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Crabtree AM, Kizer EA, Hunter SS, Van Leuven JT, New DD, Fagnan MW, Rowley PA. A Rapid Method for Sequencing Double-Stranded RNAs Purified from Yeasts and the Identification of a Potent K1 Killer Toxin Isolated from Saccharomyces cerevisiae. Viruses. 2019 Jan 16;11(1). doi: 10.3390/v11010070. PubMed PMID: 30654470; PubMed Central PMCID: PMC6356530.

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Gibbons JM, Marno KM, Pike R, Lee WJ, Jones CE, Ogunkolade BW, Pardieu C, Bryan A, Fu RM, Warnes G, Rowley PA, Sloan RD, McKnight Á. HIV-1 Accessory Protein Vpr Interacts with REAF/RPRD2 To Mitigate Its Antiviral Activity. J Virol. 2020 Jan 31;94(4). doi: 10.1128/JVI.01591-19. Print 2020 Jan 31. PubMed PMID: 31776272; PubMed Central PMCID: PMC6997760.

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Fan HF, Su BY, Ma CH, Rowley PA, Jayaram M. A bipartite thermodynamic-kinetic contribution by an activating mutation to RDF-independent excision by a phage serine integrase. Nucleic Acids Res. 2020 Jul 9;48(12):6413-6430. doi: 10.1093/nar/gkaa401. PubMed PMID: 32479633; PubMed Central PMCID: PMC7337939.

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Fredericks LR, Lee MD, Roslund CR, Crabtree AM, Allen PB, Rowley PA. The design and implementation of restraint devices for the injection of pathogenic microorganisms into Galleria mellonella. PLoS One. 2020;15(7):e0230767. doi: 10.1371/journal.pone.0230767. eCollection 2020. PubMed PMID: 32730254; PubMed Central PMCID: PMC7392296.

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Fredericks LR, Lee MD, Crabtree AM, Boyer JM, Kizer EA, Taggart NT, Roslund CR, Hunter SS, Kennedy CB, Willmore CG, Tebbe NM, Harris JS, Brocke SN, Rowley PA. The Species-Specific Acquisition and Diversification of a K1-like Family of Killer Toxins in Budding Yeasts of the Saccharomycotina. PLoS Genet. 2021 Feb;17(2):e1009341. doi: 10.1371/journal.pgen.1009341. eCollection 2021 Feb. PubMed PMID: 33539346; PubMed Central PMCID: PMC7888664.

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Fredericks LR, Lee MD, Eckert HR, Li S, Shipley MA, Roslund CR, Boikov DA, Kizer EA, Sobel JD, Rowley PA. Vaginal Isolates of Candida glabrata Are Uniquely Susceptible to Ionophoric Killer Toxins Produced by Saccharomyces cerevisiae. Antimicrob Agents Chemother. 2021 Jun 17;65(7):e0245020. doi: 10.1128/AAC.02450-20. Epub 2021 Jun 17. PubMed PMID: 33972245; PubMed Central PMCID: PMC8218651.

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Rowley PA, Ellahi A, Han K, Patel JS, Van Leuven JT, Sawyer SL. Nuku, a family of primate retrocopies derived from KU70. G3 (Bethesda). 2021 Aug 7;11(8). doi: 10.1093/g3journal/jkab163. PubMed PMID: 34849803; PubMed Central PMCID: PMC8496227.

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Lee MD, Creagh JW, Fredericks LR, Crabtree AM, Patel JS, Rowley PA. The Characterization of a Novel Virus Discovered in the Yeast Pichia membranifaciens. Viruses. 2022 Mar 13;14(3). doi: 10.3390/v14030594. PubMed PMID: 35337001; PubMed Central PMCID: PMC8951182.

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Zhong V. Killer Toxins for the Control of Diastatic Yeasts in Brewing. bioRxIV. 2022 October. doi: 10.1101/2022.10.17.512474.

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Li S, Patel JS, Yang J, Crabtree AM, Rubenstein BM, Lund-Andersen PK, Ytreberg FM, Rowley PA. Defining the HIV Capsid Binding Site of Nucleoporin 153. mSphere. 2022 Oct 26;7(5):e0031022. doi: 10.1128/msphere.00310-22. Epub 2022 Aug 30. PubMed PMID: 36040047; PubMed Central PMCID: PMC9599535.

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Taylor MB, Skophammer R, Warwick AR, Geck RC, Boyer JM, Walson M, Large CRL, Hickey AS, Rowley PA, Dunham MJ. yEvo: experimental evolution in high school classrooms selects for novel mutations that impact clotrimazole resistance in Saccharomyces cerevisiae. G3 (Bethesda). 2022 Nov 4;12(11). doi: 10.1093/g3journal/jkac246. PubMed PMID: 36173330; PubMed Central PMCID: PMC9635649.

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Crabtree AM, Taggart NT, Lee MD, Boyer JM, Rowley PA. The prevalence of killer yeasts and double-stranded RNAs in the budding yeast Saccharomyces cerevisiae. FEMS Yeast Res. 2023 Jan 4;23. doi: 10.1093/femsyr/foad046. PubMed PMID: 37935474; PubMed Central PMCID: PMC10664976.

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Ellis JR, Bull JJ, Rowley PA. Fungal Glycoside Hydrolases Display Unique Specificities for Polysaccharides and Staphylococcus aureus Biofilms. Microorganisms. 2023 Jan 23;11(2). doi: 10.3390/microorganisms11020293. PubMed PMID: 36838258; PubMed Central PMCID: PMC9964650.

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Taggart NT, Crabtree AM, Creagh JW, Bizarria R Jr, Li S, de la Higuera I, Barnes JE, Shipley MA, Boyer JM, Stedman KM, Ytreberg FM, Rowley PA. Novel viruses of the family Partitiviridae discovered in Saccharomyces cerevisiae. PLoS Pathog. 2023 Jun;19(6):e1011418. doi: 10.1371/journal.ppat.1011418. eCollection 2023 Jun. PubMed PMID: 37285383; PubMed Central PMCID: PMC10281585.

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Taylor MB, Warwick AR, Skophammer R, Boyer JM, Geck RC, Gunkelman K, Walson M, Rowley PA, Dunham MJ. yEvo: A modular eukaryotic genetics and evolution research experience for high school students. Ecol Evol. 2024 Jan;14(1):e10811. doi: 10.1002/ece3.10811. eCollection 2024 Jan. PubMed PMID: 38192907; PubMed Central PMCID: PMC10771926.

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Ellis JR, Rowley PA. An apparent lack of synergy between degradative enzymes against Staphylococcus aureus biofilms. MicroPubl Biol. 2024;2024. doi: 10.17912/micropub.biology.001119. eCollection 2024. PubMed PMID: 38596361; PubMed Central PMCID: PMC11002645.

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Zhong V, Ketchum N, Mackenzie JK, Garcia X, Rowley PA. Inhibition of diastatic yeasts by Saccharomyces killer toxins to prevent hyperattenuation during brewing. Appl Environ Microbiol. 2024 Oct 23;90(10):e0107224. doi: 10.1128/aem.01072-24. Epub 2024 Sep 12. PubMed PMID: 39264169; PubMed Central PMCID: PMC11497815.