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Rowley PA, Smith MC, Younger E, Smith MC. A motif in the C-terminal domain of phiC31 integrase controls the directionality of recombination. Nucleic Acids Res. 2008 Jul;36(12):3879-91. doi: 10.1093/nar/gkn269. Epub 2008 May 23. PubMed PMID: 18502775; PubMed Central PMCID: PMC2475636.
Rowley PA, Smith MC. Role of the N-terminal domain of phiC31 integrase in attB-attP synapsis. J Bacteriol. 2008 Oct;190(20):6918-21. doi: 10.1128/JB.00612-08. Epub 2008 Aug 8. PubMed PMID: 18689475; PubMed Central PMCID: PMC2566186.
Ma CH, Rowley PA, Macieszak A, Guga P, Jayaram M. Active site electrostatics protect genome integrity by blocking abortive hydrolysis during DNA recombination. EMBO J. 2009 Jun 17;28(12):1745-56. doi: 10.1038/emboj.2009.131. Epub 2009 May 14. PubMed PMID: 19440204; PubMed Central PMCID: PMC2699359.
Kachroo AH, Jayaram M, Rowley PA. Metabolic engineering without plasmids. Nat Biotechnol. 2009 Aug;27(8):729-31. doi: 10.1038/nbt0809-729. PubMed PMID: 19668179.
McEwan AR, Rowley PA, Smith MC. DNA binding and synapsis by the large C-terminal domain of phiC31 integrase. Nucleic Acids Res. 2009 Aug;37(14):4764-73. doi: 10.1093/nar/gkp485. Epub 2009 Jun 10. PubMed PMID: 19515935; PubMed Central PMCID: PMC2724291.
Smith MC, Brown WR, McEwan AR, Rowley PA. Site-specific recombination by phiC31 integrase and other large serine recombinases. Biochem Soc Trans. 2010 Apr;38(2):388-94. doi: 10.1042/BST0380388. Review. PubMed PMID: 20298189.
Rowley PA, Kachroo AH, Ma CH, Maciaszek AD, Guga P, Jayaram M. Electrostatic suppression allows tyrosine site-specific recombination in the absence of a conserved catalytic arginine. J Biol Chem. 2010 Jul 23;285(30):22976-85. doi: 10.1074/jbc.M110.112292. Epub 2010 May 6. PubMed PMID: 20448041; PubMed Central PMCID: PMC2906291.
Kachroo AH, Ma CH, Rowley PA, Maciaszek AD, Guga P, Jayaram M. Restoration of catalytic functions in Cre recombinase mutants by electrostatic compensation between active site and DNA substrate. Nucleic Acids Res. 2010 Oct;38(19):6589-601. doi: 10.1093/nar/gkq466. Epub 2010 May 28. PubMed PMID: 20511594; PubMed Central PMCID: PMC2965224.
Ma CH, Cui H, Hajra S, Rowley PA, Fekete C, Sarkeshik A, Ghosh SK, Yates JR 3rd, Jayaram M. Temporal sequence and cell cycle cues in the assembly of host factors at the yeast 2 micron plasmid partitioning locus. Nucleic Acids Res. 2013 Feb 1;41(4):2340-53. doi: 10.1093/nar/gks1338. Epub 2012 Dec 28. PubMed PMID: 23275556; PubMed Central PMCID: PMC3575823.
Ma CH, Liu YT, Savva CG, Rowley PA, Cannon B, Fan HF, Russell R, Holzenburg A, Jayaram M. Organization of DNA partners and strand exchange mechanisms during Flp site-specific recombination analyzed by difference topology, single molecule FRET and single molecule TPM. J Mol Biol. 2014 Feb 20;426(4):793-815. doi: 10.1016/j.jmb.2013.11.017. Epub 2013 Nov 25. PubMed PMID: 24286749.
Meyerson NR, Rowley PA, Swan CH, Le DT, Wilkerson GK, Sawyer SL. Positive selection of primate genes that promote HIV-1 replication. Virology. 2014 Apr;454-455:291-8. doi: 10.1016/j.virol.2014.02.029. Epub 2014 Mar 21. PubMed PMID: 24725956; PubMed Central PMCID: PMC4028154.
Liu YT, Sau S, Ma CH, Kachroo AH, Rowley PA, Chang KM, Fan HF, Jayaram M. The partitioning and copy number control systems of the selfish yeast plasmid: an optimized molecular design for stable persistence in host cells. Microbiol Spectr. 2014 Oct;2(5). doi: 10.1128/microbiolspec.PLAS-0003-2013. Review. PubMed PMID: 25541598; PubMed Central PMCID: PMC4274994.
McBee RM, Rozmiarek SA, Meyerson NR, Rowley PA, Sawyer SL. The effect of species representation on the detection of positive selection in primate gene data sets. Mol Biol Evol. 2015 Apr;32(4):1091-6. doi: 10.1093/molbev/msu399. Epub 2015 Jan 2. PubMed PMID: 25556235; PubMed Central PMCID: PMC4379402.
Rowley PA, Kachroo AH, Ma CH, Maciaszek AD, Guga P, Jayaram M. Stereospecific suppression of active site mutants by methylphosphonate substituted substrates reveals the stereochemical course of site-specific DNA recombination. Nucleic Acids Res. 2015 Jul 13;43(12):6023-37. doi: 10.1093/nar/gkv513. Epub 2015 May 20. PubMed PMID: 25999343; PubMed Central PMCID: PMC4499138.
Jayaram M, Ma CH, Kachroo AH, Rowley PA, Guga P, Fan HF, Voziyanov Y. An Overview of Tyrosine Site-specific Recombination: From an Flp Perspective. Microbiol Spectr. 2015 Aug;3(4). doi: 10.1128/microbiolspec.MDNA3-0021-2014. Review. PubMed PMID: 26350308.
Rowley PA, Ho B, Bushong S, Johnson A, Sawyer SL. XRN1 Is a Species-Specific Virus Restriction Factor in Yeasts. PLoS Pathog. 2016 Oct;12(10):e1005890. doi: 10.1371/journal.ppat.1005890. eCollection 2016 Oct. PubMed PMID: 27711183; PubMed Central PMCID: PMC5053509.
Rowley PA. The frenemies within: viruses, retrotransposons and plasmids that naturally infect Saccharomyces yeasts. Yeast. 2017 Jul;34(7):279-292. doi: 10.1002/yea.3234. Epub 2017 Jun 7. Review. PubMed PMID: 28387035.
Rowley PA, Patterson K, Sandmeyer SB, Sawyer SL. Control of yeast retrotransposons mediated through nucleoporin evolution. PLoS Genet. 2018 Apr;14(4):e1007325. doi: 10.1371/journal.pgen.1007325. eCollection 2018 Apr. PubMed PMID: 29694349; PubMed Central PMCID: PMC5918913.
Crabtree AM, Kizer EA, Hunter SS, Van Leuven JT, New DD, Fagnan MW, Rowley PA. A Rapid Method for Sequencing Double-Stranded RNAs Purified from Yeasts and the Identification of a Potent K1 Killer Toxin Isolated from Saccharomyces cerevisiae. Viruses. 2019 Jan 16;11(1). doi: 10.3390/v11010070. PubMed PMID: 30654470; PubMed Central PMCID: PMC6356530.
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