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  1. Seiler KM, Waye SE, Kong W, Kamimoto K, Bajinting A, Goo WH, Onufer EJ, Courtney C, Guo J, Warner BW, Morris SA. Single-Cell Analysis Reveals Regional Reprogramming during Adaptation to Massive Small Bowel Resection in Mice. Cell Mol Gastroenterol Hepatol. 2019 Jun 10;. doi: 10.1016/j.jcmgh.2019.06.001. [Epub ahead of print] PubMed PMID: 31195149.
  2. Guo C, Kong W, Kamimoto K, Rivera-Gonzalez GC, Yang X, Kirita Y, Morris SA. CellTag Indexing: genetic barcode-based sample multiplexing for single-cell genomics. Genome Biol. 2019 May 9;20(1):90. doi: 10.1186/s13059-019-1699-y. PubMed PMID: 31072405; PubMed Central PMCID: PMC6509836.
  3. Morris SA. Pinpointing a spatial address for RNA profiles in tissues. Nature. 2019 May;569(7755):197-199. doi: 10.1038/d41586-019-01405-1. PubMed PMID: 31053836.
  4. Wu H, Uchimura K, Donnelly EL, Kirita Y, Morris SA, Humphreys BD. Comparative Analysis and Refinement of Human PSC-Derived Kidney Organoid Differentiation with Single-Cell Transcriptomics. Cell Stem Cell. 2018 Dec 6;23(6):869-881.e8. doi: 10.1016/j.stem.2018.10.010. Epub 2018 Nov 15. PubMed PMID: 30449713; PubMed Central PMCID: PMC6324730.
  5. Biddy BA, Kong W, Kamimoto K, Guo C, Waye SE, Sun T, Morris SA. Single-cell mapping of lineage and identity in direct reprogramming. Nature. 2018 Dec;564(7735):219-224. doi: 10.1038/s41586-018-0744-4. Epub 2018 Dec 5. PubMed PMID: 30518857.
  6. Kamimoto K, Morris SA. Breaking New Ground in the Landscape of Single-Cell Analysis. Cell Syst. 2018 Jan 24;6(1):5-7. doi: 10.1016/j.cels.2017.12.015. PubMed PMID: 29401450.
  7. Guo C, Morris SA. Engineering cell identity: establishing new gene regulatory and chromatin landscapes. Curr Opin Genet Dev. 2017 Oct;46:50-57. doi: 10.1016/j.gde.2017.06.011. Epub 2017 Jun 28. Review. PubMed PMID: 28667865.
  8. Morris SA. Direct lineage reprogramming via pioneer factors; a detour through developmental gene regulatory networks. Development. 2016 Aug 1;143(15):2696-705. doi: 10.1242/dev.138263. Review. PubMed PMID: 27486230; PubMed Central PMCID: PMC5004913.
  9. Morris SA. Single-Cell RNA-Seq Steps Up to the Growth Plate. Trends Biotechnol. 2016 Jul;34(7):525-527. doi: 10.1016/j.tibtech.2016.05.007. Epub 2016 May 31. PubMed PMID: 27260936.
  10. Diaz MF, Li N, Lee HJ, Adamo L, Evans SM, Willey HE, Arora N, Torisawa YS, Vickers DA, Morris SA, Naveiras O, Murthy SK, Ingber DE, Daley GQ, García-Cardeña G, Wenzel PL. Biomechanical forces promote blood development through prostaglandin E2 and the cAMP-PKA signaling axis. J Exp Med. 2015 May 4;212(5):665-80. doi: 10.1084/jem.20142235. Epub 2015 Apr 13. PubMed PMID: 25870199; PubMed Central PMCID: PMC4419354.
  11. Morris SA, Cahan P, Li H, Zhao AM, San Roman AK, Shivdasani RA, Collins JJ, Daley GQ. Dissecting engineered cell types and enhancing cell fate conversion via CellNet. Cell. 2014 Aug 14;158(4):889-902. doi: 10.1016/j.cell.2014.07.021. PubMed PMID: 25126792; PubMed Central PMCID: PMC4291075.
  12. Cahan P, Li H, Morris SA, Lummertz da Rocha E, Daley GQ, Collins JJ. CellNet: network biology applied to stem cell engineering. Cell. 2014 Aug 14;158(4):903-915. doi: 10.1016/j.cell.2014.07.020. PubMed PMID: 25126793; PubMed Central PMCID: PMC4233680.
  13. Cahan P, Morris SA, Collins JJ, Daley GQ. Defining cellular identity through network biology. Cell Cycle. 2014;13(21):3313-4. doi: 10.4161/15384101.2014.972918. PubMed PMID: 25485572; PubMed Central PMCID: PMC5242225.
  14. Morris SA, Graham SJ, Jedrusik A, Zernicka-Goetz M. The differential response to Fgf signalling in cells internalized at different times influences lineage segregation in preimplantation mouse embryos. Open Biol. 2013 Nov 20;3(11):130104. doi: 10.1098/rsob.130104. PubMed PMID: 24258274; PubMed Central PMCID: PMC3843820.
  15. Morris SA, Daley GQ. A blueprint for engineering cell fate: current technologies to reprogram cell identity. Cell Res. 2013 Jan;23(1):33-48. doi: 10.1038/cr.2013.1. Epub 2013 Jan 1. Review. PubMed PMID: 23277278; PubMed Central PMCID: PMC3541663.
  16. Jones MR, Blahna MT, Kozlowski E, Matsuura KY, Ferrari JD, Morris SA, Powers JT, Daley GQ, Quinton LJ, Mizgerd JP. Zcchc11 uridylates mature miRNAs to enhance neonatal IGF-1 expression, growth, and survival. PLoS Genet. 2012;8(11):e1003105. doi: 10.1371/journal.pgen.1003105. Epub 2012 Nov 29. PubMed PMID: 23209448; PubMed Central PMCID: PMC3510031.
  17. Morris SA, Guo Y, Zernicka-Goetz M. Developmental plasticity is bound by pluripotency and the Fgf and Wnt signaling pathways. Cell Rep. 2012 Oct 25;2(4):756-65. doi: 10.1016/j.celrep.2012.08.029. Epub 2012 Oct 4. PubMed PMID: 23041313; PubMed Central PMCID: PMC3607220.
  18. Morris SA, Grewal S, Barrios F, Patankar SN, Strauss B, Buttery L, Alexander M, Shakesheff KM, Zernicka-Goetz M. Dynamics of anterior-posterior axis formation in the developing mouse embryo. Nat Commun. 2012 Feb 14;3:673. doi: 10.1038/ncomms1671. PubMed PMID: 22334076; PubMed Central PMCID: PMC3293425.
  19. Morris SA, Zernicka-Goetz M. Formation of distinct cell types in the mouse blastocyst. Results Probl Cell Differ. 2012;55:203-17. doi: 10.1007/978-3-642-30406-4_11. Review. PubMed PMID: 22918808.
  20. Morris SA. Cell fate in the early mouse embryo: sorting out the influence of developmental history on lineage choice. Reprod Biomed Online. 2011 Jun;22(6):521-4. doi: 10.1016/j.rbmo.2011.02.009. Epub 2011 Feb 19. PubMed PMID: 21493152.
  21. Morris SA, Teo RT, Li H, Robson P, Glover DM, Zernicka-Goetz M. Origin and formation of the first two distinct cell types of the inner cell mass in the mouse embryo. Proc Natl Acad Sci U S A. 2010 Apr 6;107(14):6364-9. doi: 10.1073/pnas.0915063107. Epub 2010 Mar 22. PubMed PMID: 20308546; PubMed Central PMCID: PMC2852013.
  22. Meilhac SM, Adams RJ, Morris SA, Danckaert A, Le Garrec JF, Zernicka-Goetz M. Active cell movements coupled to positional induction are involved in lineage segregation in the mouse blastocyst. Dev Biol. 2009 Jul 15;331(2):210-21. doi: 10.1016/j.ydbio.2009.04.036. Epub 2009 May 5. PubMed PMID: 19422818; PubMed Central PMCID: PMC3353123.
  23. Zernicka-Goetz M, Morris SA, Bruce AW. Making a firm decision: multifaceted regulation of cell fate in the early mouse embryo. Nat Rev Genet. 2009 Jul;10(7):467-77. doi: 10.1038/nrg2564. Review. PubMed PMID: 19536196.
  24. Morris SA, Almeida AD, Tanaka H, Ohta K, Ohnuma S. Tsukushi modulates Xnr2, FGF and BMP signaling: regulation of Xenopus germ layer formation. PLoS One. 2007 Oct 10;2(10):e1004. doi: 10.1371/journal.pone.0001004. PubMed PMID: 17925852; PubMed Central PMCID: PMC1994590.
  25. Harrington AE, Morris-Triggs SA, Ruotolo BT, Robinson CV, Ohnuma S, Hyvönen M. Structural basis for the inhibition of activin signalling by follistatin. EMBO J. 2006 Mar 8;25(5):1035-45. doi: 10.1038/sj.emboj.7601000. Epub 2006 Feb 16. PubMed PMID: 16482217; PubMed Central PMCID: PMC1409725.
  26. Anderson AA, Kendal CE, Garcia-Maya M, Kenny AV, Morris-Triggs SA, Wu T, Reynolds R, Hohenester E, Saffell JL. A peptide from the first fibronectin domain of NCAM acts as an inverse agonist and stimulates FGF receptor activation, neurite outgrowth and survival. J Neurochem. 2005 Oct;95(2):570-83. doi: 10.1111/j.1471-4159.2005.03417.x. Epub 2005 Aug 31. PubMed PMID: 16135080.
  27. Single-cell mapping of lineage and identity in direct reprogramming. Nature. NIHMSID: NIHMS1508803.
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