My Bibliography

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Chinmoy Sarkar, Yi Chen, Dexter PH Nguyen, Mehari M Weldemariam, Yulemni Morel, Amir Mehrabani-Tabari, Nikki Gorny, Olivia Pettyjohn-Robin, Nivedita Hegdekar, Sagarina Thapa, Sazia Arefin Kachi, Sabrina Bustos, Stephanie Zalesak-Kravec, Christina Williams, Nicholas Leahy, Renee Ti Chou, Shilpa D Kumar, Carrie McCracken, Thomas A Blanpied, Mariusz Karbowski, Jace W Jones, Maureen A Kane, Michael P Cummings, Marta M. Lipinski. Lysosomal multi-omics reveals altered sphingolipid catabolism as driver of lysosomal dysfunction in the aging brain. 2025 September. DOI: 10.1101/2025.09.10.675421.

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Brandon Molina, Jesse Jacob Rojas, Nadja El-Mecharrafie, Eric P Ratliff, Marta Lipinski, Kim Diane Finley. Genetic Modifiers Influencing the Acute and Long-Term Responses to Traumatic Brain Injury in Drosophila. 2025 February. DOI: 10.1101/2025.02.10.637558.

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Marta Lipinski, Amir Mehrabani-Tabari, Nivedita Hegdekar, Brian R. Herb, Sazia Arefin Kachi, Chinmoy Sarkar, Sagarina Thapa, Dexter Nguyen, Yulemni Morel, Mehari Weldemariam, Ludovic Muller, W Andrews, Marcia Cortes-Gutierrez, Xiaoxuan Fan, Natarajan Ayithan, Olivia Pettyjohn-Robin, Sabrina Bustos, Lacey Greer, Jessica Gore, Maureen Kane, Seth Ament, Jace Jones. Inhibition of autophagy-lysosomal function exacerbates microglial and monocyte lipid metabolism reprograming and dysfunction after brain injury. 2025 October. DOI: 10.21203/rs.3.rs-7682363/v1.

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Wang Z, Li Y, Lee H, Lei Z, Wu LJ, Wu J. Hv1 Upregulation Worsens Spinal, Spleen, and Lung Molecular Pathology and Impairs Locomotion after Spinal Cord Injury in Aged Male Mice. Aging Dis. 2025 Dec 15;. doi: 10.14336/AD.2025.1122. [Epub ahead of print] PubMed PMID: 41400580.

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Lei Z, Li Y, Li H, Wu J. Autophagy activation by the Becn1(F121A) mutation reprograms neuroinflammation and promotes neurological recovery after spinal cord injury. Brain Behav Immun. 2026 Jan;131:106191. doi: 10.1016/j.bbi.2025.106191. Epub 2025 Nov 19. PubMed PMID: 41271189; PubMed Central PMCID: PMC12821155.

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Fadon-Padilla L, Chu C, Liang Y, Sarkar C, Lipinski MM, Janowski M, Walczak P. A Modified Repetitive Closed Head Injury Model Inducing Persistent Neuroinflammation and Functional Deficits Without Extensive Cortical Tissue Destruction. J Neurotrauma. 2026 Mar;43(5-6):485-500. doi: 10.1177/08977151251387679. Epub 2025 Oct 23. PubMed PMID: 41173520.

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Hwang H, Sarkar C, Piskoun B, Zhang N, Borcar A, Robertson CL, Lipinski MM, Yadava N, Goodfellow MJ, Polster BM. Idebenone Mitigates Traumatic-Brain-Injury-Triggered Gene Expression Changes to Ephrin-A and Dopamine Signaling Pathways While Increasing Microglial Genes. Cells. 2025 Jun 1;14(11). doi: 10.3390/cells14110824. PubMed PMID: 40498000; PubMed Central PMCID: PMC12154110.

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Mehrabani-Tabari AA, Hegdekar N, Bustos S, Morel Y, Ji Y, Kachi SA, Pettyjohn-Robin O, Thapa S, Bhattiprolu M, Lipinski MM, Jones JW, Sarkar C. Peroxisomal ether-glycerophospholipid synthesis is dysregulated after TBI. J Lipid Res. 2025 Jun;66(6):100821. doi: 10.1016/j.jlr.2025.100821. Epub 2025 May 7. PubMed PMID: 40345661; PubMed Central PMCID: PMC12255425.

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Xin Chen, Andrey S Tsvetkov, Han-Ming Shen, Ciro Isidoro, Nicholas T Ktistakis, Andreas Linkermann, Werner J H Koopman, Hans-Uwe Simon, Lorenzo Galluzzi, Shouqing Luo, Daqian Xu, Wei Gu, Olivier Peulen, Qian Cai, David C Rubinsztein, Jen-Tsan Chi, Donna D Zhang, Changfeng Li, Shinya Toyokuni, Jinbao Liu, Jong-Lyel Roh, Enyong Dai, Gabor Juhasz, Wei Liu, Jianhua Zhang, Minghua Yang, Jiao Liu, Ling-Qiang Zhu, Weiping Zou, Mauro Piacentini, Wen-Xing Ding, Zhenyu Yue, Yangchun Xie, Morten Petersen, David A Gewirtz, Michael A Mandell, Charleen T Chu, Debasish Sinha, Eftekhar Eftekharpour, Boris Zhivotovsky, Sébastien Besteiro, Dmitry I Gabrilovich, Do-Hyung Kim, Valerian E Kagan, Hülya Bayir, Guang-Chao Chen, Scott Ayton, Jan D Lünemann, Masaaki Komatsu, Stefan Krautwald, Ben Loos, Eric H Baehrecke, Jiayi Wang, Jon D Lane, Junichi Sadoshima, Wan Seok Yang, Minghui Gao, Christian Münz, Michael Thumm, Martin Kampmann, Di Yu, Marta M Lipinski, Jace W Jones, Xuejun Jiang, Herbert J Zeh, Rui Kang, Daniel J Klionsky, Guido Kroemer, Daolin Tang. International consensus guidelines for the definition, detection, and interpretation of autophagy-dependent ferroptosis. Taylor & Francis. 2024. doi: 10.48350/193887.

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Sarkar C, Lipinski MM. Role and Function of Peroxisomes in Neuroinflammation. Cells. 2024 Oct 5;13(19). doi: 10.3390/cells13191655. Review. PubMed PMID: 39404418; PubMed Central PMCID: PMC11476013.

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Li Y, Lei Z, Ritzel RM, He J, Liu S, Zhang L, Wu J. Ablation of the Integrin CD11b Mac-1 Limits Deleterious Responses to Traumatic Spinal Cord Injury and Improves Functional Recovery in Mice. Cells. 2024 Sep 20;13(18). doi: 10.3390/cells13181584. PubMed PMID: 39329765; PubMed Central PMCID: PMC11430243.

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Lei Z, Krishnamachary B, Khan NZ, Ji Y, Li Y, Li H, Brunner K, Faden AI, Jones JW, Wu J. Spinal cord injury disrupts plasma extracellular vesicles cargoes leading to neuroinflammation in the brain and neurological dysfunction in aged male mice. Brain Behav Immun. 2024 Aug;120:584-603. doi: 10.1016/j.bbi.2024.07.005. Epub 2024 Jul 8. PubMed PMID: 38986724; PubMed Central PMCID: PMC11269008.

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Lei Z, Ritzel RM, Li Y, Li H, Faden AI, Wu J. Old age alters inflammation and autophagy signaling in the brain, leading to exacerbated neurological outcomes after spinal cord injury in male mice. Brain Behav Immun. 2024 Aug;120:439-451. doi: 10.1016/j.bbi.2024.06.023. Epub 2024 Jun 24. PubMed PMID: 38925420; PubMed Central PMCID: PMC11269014.

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Ji Y, Morel Y, Tran AQ, Lipinski MM, Sarkar C, Jones JW. Development and evaluation of a liquid chromatography-tandem mass spectrometry method for simultaneous measurement of toxic aldehydes from brain tissue. J Chromatogr B Analyt Technol Biomed Life Sci. 2024 Jul 15;1242:124208. doi: 10.1016/j.jchromb.2024.124208. Epub 2024 Jun 13. PubMed PMID: 38880056; PubMed Central PMCID: PMC11227393.

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Li Y, Wu J. Sex-dependent alterations in extracellular vesicles linking chronic spinal cord injury to brain neuroinflammation and neurodegeneration. Neural Regen Res. 2025 Feb 1;20(2):483-484. doi: 10.4103/NRR.NRR-D-24-00189. Epub 2024 May 13. PubMed PMID: 38819058; PubMed Central PMCID: PMC11317934.

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Sarkar C, Lipinski MM. Autophagy in neuroinflammation after traumatic brain injury. Neural Regen Res. 2024 May;19(5):951-952. doi: 10.4103/1673-5374.382247. PubMed PMID: 37862184; PubMed Central PMCID: PMC10749619.

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Sarkar C, Lipinski MM. Glycerophospholipid dysregulation after traumatic brain injury. Neurochem Int. 2024 May;175:105701. doi: 10.1016/j.neuint.2024.105701. Epub 2024 Feb 28. Review. PubMed PMID: 38428503; PubMed Central PMCID: PMC11040658.

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Li Y, Khan N, Ritzel RM, Lei Z, Allen S, Faden AI, Wu J. Sexually dimorphic extracellular vesicle responses after chronic spinal cord injury are associated with neuroinflammation and neurodegeneration in the aged brain. J Neuroinflammation. 2023 Aug 31;20(1):197. doi: 10.1186/s12974-023-02881-z. PubMed PMID: 37653491; PubMed Central PMCID: PMC10469550.

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Liu X, Lei Z, Gilhooly D, He J, Li Y, Ritzel RM, Li H, Wu LJ, Liu S, Wu J. Traumatic brain injury-induced inflammatory changes in the olfactory bulb disrupt neuronal networks leading to olfactory dysfunction. Brain Behav Immun. 2023 Nov;114:22-45. doi: 10.1016/j.bbi.2023.08.004. Epub 2023 Aug 7. PubMed PMID: 37557959; PubMed Central PMCID: PMC10910858.

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Mubariz F, Saadin A, Lingenfelter N, Sarkar C, Banerjee A, Lipinski MM, Awad O. Deregulation of mTORC1-TFEB axis in human iPSC model of GBA1-associated Parkinson's disease. Front Neurosci. 2023;17:1152503. doi: 10.3389/fnins.2023.1152503. eCollection 2023. PubMed PMID: 37332877; PubMed Central PMCID: PMC10272450.

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Lei Z, Krishnamachary B, Ritzel RM, Khan NZ, Li Y, Li H, Brunner K, Faden AI, Wu J. Age-related changes in plasma extracellular vesicles influence neuroinflammation in the brain and neurological outcome after traumatic spinal cord injury. Res Sq. 2023 Apr 17;. doi: 10.21203/rs.3.rs-2821858/v1. PubMed PMID: 37131758; PubMed Central PMCID: PMC10153385.

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Ritzel RM, Wu J. Functional phenotyping of microglia highlights the dark relationship between chronic traumatic brain injury and normal age-related pathology. Neural Regen Res. 2023 Apr;18(4):811-813. doi: 10.4103/1673-5374.353487. PubMed PMID: 36204847; PubMed Central PMCID: PMC9700114.

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Ritzel RM, Li Y, Jiao Y, Lei Z, Doran SJ, He J, Shahror RA, Henry RJ, Khan R, Tan C, Liu S, Stoica BA, Faden AI, Szeto G, Loane DJ, Wu J. Brain injury accelerates the onset of a reversible age-related microglial phenotype associated with inflammatory neurodegeneration. Sci Adv. 2023 Mar 10;9(10):eadd1101. doi: 10.1126/sciadv.add1101. Epub 2023 Mar 8. PubMed PMID: 36888713; PubMed Central PMCID: PMC9995070.

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Hegdekar N, Sarkar C, Bustos S, Ritzel RM, Hanscom M, Ravishankar P, Philkana D, Wu J, Loane DJ, Lipinski MM. Inhibition of autophagy in microglia and macrophages exacerbates innate immune responses and worsens brain injury outcomes. Autophagy. 2023 Jul;19(7):2026-2044. doi: 10.1080/15548627.2023.2167689. Epub 2023 Jan 18. PubMed PMID: 36652438; PubMed Central PMCID: PMC10283445.

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Choi HMC, Li Y, Suraj D, Hsia RC, Sarkar C, Wu J, Lipinski MM. Autophagy protein ULK1 interacts with and regulates SARM1 during axonal injury. Proc Natl Acad Sci U S A. 2022 Nov 22;119(47):e2203824119. doi: 10.1073/pnas.2203824119. Epub 2022 Nov 14. PubMed PMID: 36375051; PubMed Central PMCID: PMC9704737.

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Sarkar C, Lipinski MM. N-acetyl-L-leucine: a promising treatment option for traumatic brain injury. Neural Regen Res. 2022 Sep;17(9):1957-1958. doi: 10.4103/1673-5374.335146. PubMed PMID: 35142673; PubMed Central PMCID: PMC8848596.

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Li Y, Lei Z, Ritzel RM, He J, Li H, Choi HMC, Lipinski MM, Wu J. Impairment of autophagy after spinal cord injury potentiates neuroinflammation and motor function deficit in mice. Theranostics. 2022;12(12):5364-5388. doi: 10.7150/thno.72713. eCollection 2022. PubMed PMID: 35910787; PubMed Central PMCID: PMC9330534.

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Ritzel RM, Li Y, Lei Z, Carter J, He J, Choi HMC, Khan N, Li H, Allen S, Lipinski MM, Faden AI, Wu J. Functional and transcriptional profiling of microglial activation during the chronic phase of TBI identifies an age-related driver of poor outcome in old mice. Geroscience. 2022 Jun;44(3):1407-1440. doi: 10.1007/s11357-022-00562-y. Epub 2022 Apr 22. PubMed PMID: 35451674; PubMed Central PMCID: PMC9213636.

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Li Y, Ritzel RM, Lei Z, Cao T, He J, Faden AI, Wu J. Sexual dimorphism in neurological function after SCI is associated with disrupted neuroinflammation in both injured spinal cord and brain. Brain Behav Immun. 2022 Mar;101:1-22. doi: 10.1016/j.bbi.2021.12.017. Epub 2021 Dec 23. PubMed PMID: 34954073; PubMed Central PMCID: PMC8885910.

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Zou L, He J, Gu L, Shahror RA, Li Y, Cao T, Wang S, Zhu J, Huang H, Chen F, Fan X, Wu J, Chao W. Brain innate immune response via miRNA-TLR7 sensing in polymicrobial sepsis. Brain Behav Immun. 2022 Feb;100:10-24. doi: 10.1016/j.bbi.2021.11.007. Epub 2021 Nov 19. PubMed PMID: 34808293; PubMed Central PMCID: PMC8766937.

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Morel Y, Hegdekar N, Sarkar C, Lipinski MM, Kane MA, Jones JW. Structure-specific, accurate quantitation of plasmalogen glycerophosphoethanolamine. Anal Chim Acta. 2021 Nov 22;1186:339088. doi: 10.1016/j.aca.2021.339088. Epub 2021 Sep 22. PubMed PMID: 34756256; PubMed Central PMCID: PMC8581249.

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Hegdekar N, Lipinski MM, Sarkar C. N-Acetyl-L-leucine improves functional recovery and attenuates cortical cell death and neuroinflammation after traumatic brain injury in mice. Sci Rep. 2021 Apr 29;11(1):9249. doi: 10.1038/s41598-021-88693-8. PubMed PMID: 33927281; PubMed Central PMCID: PMC8084982.

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He J, Ritzel RM, Wu J. Functions and Mechanisms of the Voltage-Gated Proton Channel Hv1 in Brain and Spinal Cord Injury. Front Cell Neurosci. 2021;15:662971. doi: 10.3389/fncel.2021.662971. eCollection 2021. Review. PubMed PMID: 33897377; PubMed Central PMCID: PMC8063047.

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Dutta D, Khan N, Wu J, Jay SM. Extracellular Vesicles as an Emerging Frontier in Spinal Cord Injury Pathobiology and Therapy. Trends Neurosci. 2021 Jun;44(6):492-506. doi: 10.1016/j.tins.2021.01.003. Epub 2021 Feb 11. Review. PubMed PMID: 33581883; PubMed Central PMCID: PMC8159852.

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Klionsky DJ, Abdel-Aziz AK, Abdelfatah S, Abdellatif M, Abdoli A, Abel S, Abeliovich H, Abildgaard MH, Abudu YP, Acevedo-Arozena A, Adamopoulos IE, Adeli K, Adolph TE, Adornetto A, Aflaki E, Agam G, Agarwal A, Aggarwal BB, Agnello M, Agostinis P, Agrewala JN, Agrotis A, Aguilar PV, Ahmad ST, Ahmed ZM, Ahumada-Castro U, Aits S, Aizawa S, Akkoc Y, Akoumianaki T, Akpinar HA, Al-Abd AM, Al-Akra L, Al-Gharaibeh A, Alaoui-Jamali MA, Alberti S, Alcocer-Gómez E, Alessandri C, Ali M, Alim Al-Bari MA, Aliwaini S, Alizadeh J, Almacellas E, Almasan A, Alonso A, Alonso GD, Altan-Bonnet N, Altieri DC, Álvarez ÉMC, Alves S, Alves da Costa C, Alzaharna MM, Amadio M, Amantini C, Amaral C, Ambrosio S, Amer AO, Ammanathan V, An Z, Andersen SU, Andrabi SA, Andrade-Silva M, Andres AM, Angelini S, Ann D, Anozie UC, Ansari MY, Antas P, Antebi A, Antón Z, Anwar T, Apetoh L, Apostolova N, Araki T, Araki Y, Arasaki K, Araújo WL, Araya J, Arden C, Arévalo MA, Arguelles S, Arias E, Arikkath J, Arimoto H, Ariosa AR, Armstrong-James D, Arnauné-Pelloquin L, Aroca A, Arroyo DS, Arsov I, Artero R, Asaro DML, Aschner M, Ashrafizadeh M, Ashur-Fabian O, Atanasov AG, Au AK, Auberger P, Auner HW, Aurelian L, Autelli R, Avagliano L, Ávalos Y, Aveic S, Aveleira CA, Avin-Wittenberg T, Aydin Y, Ayton S, Ayyadevara S, Azzopardi M, Baba M, Backer JM, Backues SK, Bae DH, Bae ON, Bae SH, Baehrecke EH, Baek A, Baek SH, Baek SH, Bagetta G, Bagniewska-Zadworna A, Bai H, Bai J, Bai X, Bai Y, Bairagi N, Baksi S, Balbi T, Baldari CT, Balduini W, Ballabio A, Ballester M, Balazadeh S, Balzan R, Bandopadhyay R, Banerjee S, Banerjee S, Bánréti Á, Bao Y, Baptista MS, Baracca A, Barbati C, Bargiela A, Barilà D, Barlow PG, Barmada SJ, Barreiro E, Barreto GE, Bartek J, Bartel B, Bartolome A, Barve GR, Basagoudanavar SH, Bassham DC, Bast RC Jr, Basu A, Batoko H, Batten I, Baulieu EE, Baumgarner BL, Bayry J, Beale R, Beau I, Beaumatin F, Bechara LRG, Beck GR Jr, Beers MF, Begun J, Behrends C, Behrens GMN, Bei R, Bejarano E, Bel S, Behl C, Belaid A, Belgareh-Touzé N, Bellarosa C, Belleudi F, Belló Pérez M, Bello-Morales R, Beltran JSO, Beltran S, Benbrook DM, Bendorius M, Benitez BA, Benito-Cuesta I, Bensalem J, Berchtold MW, Berezowska S, Bergamaschi D, Bergami M, Bergmann A, Berliocchi L, Berlioz-Torrent C, Bernard A, Berthoux L, Besirli CG, Besteiro S, Betin VM, Beyaert R, Bezbradica JS, Bhaskar K, Bhatia-Kissova I, Bhattacharya R, Bhattacharya S, Bhattacharyya S, Bhuiyan MS, Bhutia SK, Bi L, Bi X, Biden TJ, Bijian K, Billes VA, Binart N, Bincoletto C, Birgisdottir AB, Bjorkoy G, Blanco G, Blas-Garcia A, Blasiak J, Blomgran R, Blomgren K, Blum JS, Boada-Romero E, Boban M, Boesze-Battaglia K, Boeuf P, Boland B, Bomont P, Bonaldo P, Bonam SR, Bonfili L, Bonifacino JS, Boone BA, Bootman MD, Bordi M, Borner C, Bornhauser BC, Borthakur G, Bosch J, Bose S, Botana LM, Botas J, Boulanger CM, Boulton ME, Bourdenx M, Bourgeois B, Bourke NM, Bousquet G, Boya P, Bozhkov PV, Bozi LHM, Bozkurt TO, Brackney DE, Brandts CH, Braun RJ, Braus GH, Bravo-Sagua R, Bravo-San Pedro JM, Brest P, Bringer MA, Briones-Herrera A, Broaddus VC, Brodersen P, Brodsky JL, Brody SL, Bronson PG, Bronstein JM, Brown CN, Brown RE, Brum PC, Brumell JH, Brunetti-Pierri N, Bruno D, Bryson-Richardson RJ, Bucci C, Buchrieser C, Bueno M, Buitrago-Molina LE, Buraschi S, Buch S, Buchan JR, Buckingham EM, Budak H, Budini M, Bultynck G, Burada F, Burgoyne JR, Burón MI, Bustos V, Büttner S, Butturini E, Byrd A, Cabas I, Cabrera-Benitez S, Cadwell K, Cai J, Cai L, Cai Q, Cairó M, Calbet JA, Caldwell GA, Caldwell KA, Call JA, Calvani R, Calvo AC, Calvo-Rubio Barrera M, Camara NO, Camonis JH, Camougrand N, Campanella M, Campbell EM, Campbell-Valois FX, Campello S, Campesi I, Campos JC, Camuzard O, Cancino J, Candido de Almeida D, Canesi L, Caniggia I, Canonico B, Cantí C, Cao B, Caraglia M, Caramés B, Carchman EH, Cardenal-Muñoz E, Cardenas C, Cardenas L, Cardoso SM, Carew JS, Carle GF, Carleton G, Carloni S, Carmona-Gutierrez D, Carneiro LA, Carnevali O, Carosi JM, Carra S, Carrier A, Carrier L, Carroll B, Carter AB, Carvalho AN, Casanova M, Casas C, Casas J, Cassioli C, Castillo EF, Castillo K, Castillo-Lluva S, Castoldi F, Castori M, Castro AF, Castro-Caldas M, Castro-Hernandez J, Castro-Obregon S, Catz SD, Cavadas C, Cavaliere F, Cavallini G, Cavinato M, Cayuela ML, Cebollada Rica P, Cecarini V, Cecconi F, Cechowska-Pasko M, Cenci S, Ceperuelo-Mallafré V, Cerqueira JJ, Cerutti JM, Cervia D, Cetintas VB, Cetrullo S, Chae HJ, Chagin AS, Chai CY, Chakrabarti G, Chakrabarti O, Chakraborty T, Chakraborty T, Chami M, Chamilos G, Chan DW, Chan EYW, Chan ED, Chan HYE, Chan HH, Chan H, Chan MTV, Chan YS, Chandra PK, Chang CP, Chang C, Chang HC, Chang K, Chao J, Chapman T, Charlet-Berguerand N, Chatterjee S, Chaube SK, Chaudhary A, Chauhan S, Chaum E, Checler F, Cheetham ME, Chen CS, Chen GC, Chen JF, Chen LL, Chen L, Chen L, Chen M, Chen MK, Chen N, Chen Q, Chen RH, Chen S, Chen W, Chen W, Chen XM, Chen XW, Chen X, Chen Y, Chen YG, Chen Y, Chen Y, Chen YJ, Chen YQ, Chen ZS, Chen Z, Chen ZH, Chen ZJ, Chen Z, Cheng H, Cheng J, Cheng SY, Cheng W, Cheng X, Cheng XT, Cheng Y, Cheng Z, Chen Z, Cheong H, Cheong JK, Chernyak BV, Cherry S, Cheung CFR, Cheung CHA, Cheung KH, Chevet E, Chi RJ, Chiang AKS, Chiaradonna F, Chiarelli R, Chiariello M, Chica N, Chiocca S, Chiong M, Chiou SH, Chiramel AI, Chiurchiù V, Cho DH, Choe SK, Choi AMK, Choi ME, Choudhury KR, Chow NS, Chu CT, Chua JP, Chua JJE, Chung H, Chung KP, Chung S, Chung SH, Chung YL, Cianfanelli V, Ciechomska IA, Cifuentes M, Cinque L, Cirak S, Cirone M, Clague MJ, Clarke R, Clementi E, Coccia EM, Codogno P, Cohen E, Cohen MM, Colasanti T, Colasuonno F, Colbert RA, Colell A, Čolić M, Coll NS, Collins MO, Colombo MI, Colón-Ramos DA, Combaret L, Comincini S, Cominetti MR, Consiglio A, Conte A, Conti F, Contu VR, Cookson MR, Coombs KM, Coppens I, Corasaniti MT, Corkery DP, Cordes N, Cortese K, Costa MDC, Costantino S, Costelli P, Coto-Montes A, Crack PJ, Crespo JL, Criollo A, Crippa V, Cristofani R, Csizmadia T, Cuadrado A, Cui B, Cui J, Cui Y, Cui Y, Culetto E, Cumino AC, Cybulsky AV, Czaja MJ, Czuczwar SJ, D'Adamo S, D'Amelio M, D'Arcangelo D, D'Lugos AC, D'Orazi G, da Silva JA, Dafsari HS, Dagda RK, Dagdas Y, Daglia M, Dai X, Dai Y, Dai Y, Dal Col J, Dalhaimer P, Dalla Valle L, Dallenga T, Dalmasso G, Damme M, Dando I, Dantuma NP, Darling AL, Das H, Dasarathy S, Dasari SK, Dash S, Daumke O, Dauphinee AN, Davies JS, Dávila VA, Davis RJ, Davis T, Dayalan Naidu S, De Amicis F, De Bosscher K, De Felice F, De Franceschi L, De Leonibus C, de Mattos Barbosa MG, De Meyer GRY, De Milito A, De Nunzio C, De Palma C, De Santi M, De Virgilio C, De Zio D, Debnath J, DeBosch BJ, Decuypere JP, Deehan MA, Deflorian G, DeGregori J, Dehay B, Del Rio G, Delaney JR, Delbridge LMD, Delorme-Axford E, Delpino MV, Demarchi F, Dembitz V, Demers ND, Deng H, Deng Z, Dengjel J, Dent P, Denton D, DePamphilis ML, Der CJ, Deretic V, Descoteaux A, Devis L, Devkota S, Devuyst O, Dewson G, Dharmasivam M, Dhiman R, di Bernardo D, Di Cristina M, Di Domenico F, Di Fazio P, Di Fonzo A, Di Guardo G, Di Guglielmo GM, Di Leo L, Di Malta C, Di Nardo A, Di Rienzo M, Di Sano F, Diallinas G, Diao J, Diaz-Araya G, Díaz-Laviada I, Dickinson JM, Diederich M, Dieudé M, Dikic I, Ding S, Ding WX, Dini L, Dinić J, Dinic M, Dinkova-Kostova AT, Dionne MS, Distler JHW, Diwan A, Dixon IMC, Djavaheri-Mergny M, Dobrinski I, Dobrovinskaya O, Dobrowolski R, Dobson RCJ, Đokić J, Dokmeci Emre S, Donadelli M, Dong B, Dong X, Dong Z, Dorn Ii GW, Dotsch V, Dou H, Dou J, Dowaidar M, Dridi S, Drucker L, Du A, Du C, Du G, Du HN, Du LL, du Toit A, Duan SB, Duan X, Duarte SP, Dubrovska A, Dunlop EA, Dupont N, Durán RV, Dwarakanath BS, Dyshlovoy SA, Ebrahimi-Fakhari D, Eckhart L, Edelstein CL, Efferth T, Eftekharpour E, Eichinger L, Eid N, Eisenberg T, Eissa NT, Eissa S, Ejarque M, El Andaloussi A, El-Hage N, El-Naggar S, Eleuteri AM, El-Shafey ES, Elgendy M, Eliopoulos AG, Elizalde MM, Elks PM, Elsasser HP, Elsherbiny ES, Emerling BM, Emre NCT, Eng CH, Engedal N, Engelbrecht AM, Engelsen AST, Enserink JM, Escalante R, Esclatine A, Escobar-Henriques M, Eskelinen EL, Espert L, Eusebio MO, Fabrias G, Fabrizi C, Facchiano A, Facchiano F, Fadeel B, Fader C, Faesen AC, Fairlie WD, Falcó A, Falkenburger BH, Fan D, Fan J, Fan Y, Fang EF, Fang Y, Fang Y, Fanto M, Farfel-Becker T, Faure M, Fazeli G, Fedele AO, Feldman AM, Feng D, Feng J, Feng L, Feng Y, Feng Y, Feng W, Fenz Araujo T, Ferguson TA, Fernández ÁF, Fernandez-Checa JC, Fernández-Veledo S, Fernie AR, Ferrante AW Jr, Ferraresi A, Ferrari MF, Ferreira JCB, Ferro-Novick S, Figueras A, Filadi R, Filigheddu N, Filippi-Chiela E, Filomeni G, Fimia GM, Fineschi V, Finetti F, Finkbeiner S, Fisher EA, Fisher PB, Flamigni F, Fliesler SJ, Flo TH, Florance I, Florey O, Florio T, Fodor E, Follo C, Fon EA, Forlino A, Fornai F, Fortini P, Fracassi A, Fraldi A, Franco B, Franco R, Franconi F, Frankel LB, Friedman SL, 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Ritzel RM, He J, Li Y, Cao T, Khan N, Shim B, Sabirzhanov B, Aubrecht T, Stoica BA, Faden AI, Wu LJ, Wu J. Proton extrusion during oxidative burst in microglia exacerbates pathological acidosis following traumatic brain injury. Glia. 2021 Mar;69(3):746-764. doi: 10.1002/glia.23926. Epub 2020 Oct 22. PubMed PMID: 33090575; PubMed Central PMCID: PMC7819364.

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Li Y, Ritzel RM, He J, Cao T, Sabirzhanov B, Li H, Liu S, Wu LJ, Wu J. The voltage-gated proton channel Hv1 plays a detrimental role in contusion spinal cord injury via extracellular acidosis-mediated neuroinflammation. Brain Behav Immun. 2021 Jan;91:267-283. doi: 10.1016/j.bbi.2020.10.005. Epub 2020 Oct 8. PubMed PMID: 33039662; PubMed Central PMCID: PMC7749852.

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Li Y, Ritzel RM, Khan N, Cao T, He J, Lei Z, Matyas JJ, Sabirzhanov B, Liu S, Li H, Stoica BA, Loane DJ, Faden AI, Wu J. Delayed microglial depletion after spinal cord injury reduces chronic inflammation and neurodegeneration in the brain and improves neurological recovery in male mice. Theranostics. 2020;10(25):11376-11403. doi: 10.7150/thno.49199. eCollection 2020. PubMed PMID: 33052221; PubMed Central PMCID: PMC7545988.

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Li Y, Cao T, Ritzel RM, He J, Faden AI, Wu J. Dementia, Depression, and Associated Brain Inflammatory Mechanisms after Spinal Cord Injury. Cells. 2020 Jun 8;9(6). doi: 10.3390/cells9061420. Review. PubMed PMID: 32521597; PubMed Central PMCID: PMC7349379.

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Cao T, Matyas JJ, Renn CL, Faden AI, Dorsey SG, Wu J. Function and Mechanisms of Truncated BDNF Receptor TrkB.T1 in Neuropathic Pain. Cells. 2020 May 11;9(5). doi: 10.3390/cells9051194. Review. PubMed PMID: 32403409; PubMed Central PMCID: PMC7290366.

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Ritzel RM, Li Y, He J, Khan N, Doran SJ, Faden AI, Wu J. Sustained neuronal and microglial alterations are associated with diverse neurobehavioral dysfunction long after experimental brain injury. Neurobiol Dis. 2020 Mar;136:104713. doi: 10.1016/j.nbd.2019.104713. Epub 2019 Dec 13. PubMed PMID: 31843705; PubMed Central PMCID: PMC7155942.

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Sabirzhanov B, Matyas J, Coll-Miro M, Yu LL, Faden AI, Stoica BA, Wu J. Inhibition of microRNA-711 limits angiopoietin-1 and Akt changes, tissue damage, and motor dysfunction after contusive spinal cord injury in mice. Cell Death Dis. 2019 Nov 4;10(11):839. doi: 10.1038/s41419-019-2079-y. PubMed PMID: 31685802; PubMed Central PMCID: PMC6828685.

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Brown RA, Voit A, Srikanth MP, Thayer JA, Kingsbury TJ, Jacobson MA, Lipinski MM, Feldman RA, Awad O. mTOR hyperactivity mediates lysosomal dysfunction in Gaucher's disease iPSC-neuronal cells. Dis Model Mech. 2019 Oct 16;12(10). doi: 10.1242/dmm.038596. PubMed PMID: 31519738; PubMed Central PMCID: PMC6826018.

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Li Y, Jones JW, M C Choi H, Sarkar C, Kane MA, Koh EY, Lipinski MM, Wu J. cPLA2 activation contributes to lysosomal defects leading to impairment of autophagy after spinal cord injury. Cell Death Dis. 2019 Jul 11;10(7):531. doi: 10.1038/s41419-019-1764-1. PubMed PMID: 31296844; PubMed Central PMCID: PMC6624263.

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Wu J, Lipinski MM. Autophagy in Neurotrauma: Good, Bad, or Dysregulated. Cells. 2019 Jul 10;8(7). doi: 10.3390/cells8070693. Review. PubMed PMID: 31295858; PubMed Central PMCID: PMC6678153.

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Sarkar C, Jones JW, Hegdekar N, Thayer JA, Kumar A, Faden AI, Kane MA, Lipinski MM. PLA2G4A/cPLA2-mediated lysosomal membrane damage leads to inhibition of autophagy and neurodegeneration after brain trauma. Autophagy. 2020 Mar;16(3):466-485. doi: 10.1080/15548627.2019.1628538. Epub 2019 Jun 25. PubMed PMID: 31238788; PubMed Central PMCID: PMC6999646.

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Thayer JA, Awad O, Hegdekar N, Sarkar C, Tesfay H, Burt C, Zeng X, Feldman RA, Lipinski MM. The PARK10 gene USP24 is a negative regulator of autophagy and ULK1 protein stability. Autophagy. 2020 Jan;16(1):140-153. doi: 10.1080/15548627.2019.1598754. Epub 2019 Apr 7. PubMed PMID: 30957634; PubMed Central PMCID: PMC6984603.

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Jones JW, Sarkar C, Lipinski MM, Kane MA. Detection and Structural Characterization of Ether Glycerophosphoethanolamine from Cortical Lysosomes Following Traumatic Brain Injury Using UPLC-HDMS(E). Proteomics. 2019 Sep;19(18):e1800297. doi: 10.1002/pmic.201800297. Epub 2019 Mar 19. PubMed PMID: 30790445; PubMed Central PMCID: PMC7565256.

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Sabirzhanov B, Li Y, Coll-Miro M, Matyas JJ, He J, Kumar A, Ward N, Yu J, Faden AI, Wu J. Inhibition of NOX2 signaling limits pain-related behavior and improves motor function in male mice after spinal cord injury: Participation of IL-10/miR-155 pathways. Brain Behav Immun. 2019 Aug;80:73-87. doi: 10.1016/j.bbi.2019.02.024. Epub 2019 Feb 23. PubMed PMID: 30807841; PubMed Central PMCID: PMC6660361.

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Liu S, Li Y, Choi HMC, Sarkar C, Koh EY, Wu J, Lipinski MM. Lysosomal damage after spinal cord injury causes accumulation of RIPK1 and RIPK3 proteins and potentiation of necroptosis. Cell Death Dis. 2018 May 1;9(5):476. doi: 10.1038/s41419-018-0469-1. PubMed PMID: 29686269; PubMed Central PMCID: PMC5913300.