My Bibliography

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Stevanovic M, Carvalho JP, Bittihn P, Schultz D. Dynamical model of antibiotic responses linking expression of resistance to metabolism explains emergence of heterogeneity during drug exposures. bioRxiv : the preprint server for biology. 2023 September.

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Schultz D. mSphere of Influence: Learning Biology from the Radio. mSphere. 2023 Feb 21;8(1):e0002623. doi: 10.1128/msphere.00026-23. Epub 2023 Feb 2. PubMed PMID: 36728432; PubMed Central PMCID: PMC9942574.

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Robitaille S, Simmons EL, Verster AJ, McClure EA, Royce DB, Trus E, Swartz K, Schultz D, Nadell CD, Ross BD. Community composition and the environment modulate the population dynamics of type VI secretion in human gut bacteria. bioRxiv. 2023 Feb 21;. doi: 10.1101/2023.02.20.529031. PubMed PMID: 36865186; PubMed Central PMCID: PMC9980007.

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Jean-Pierre F, Hampton TH, Schultz D, Hogan DA, Groleau MC, Déziel E, O'Toole GA. Community composition shapes microbial-specific phenotypes in a cystic fibrosis polymicrobial model system. Elife. 2023 Jan 20;12. doi: 10.7554/eLife.81604. PubMed PMID: 36661299; PubMed Central PMCID: PMC9897730.

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Schultz D, Stevanovic M, Tsimring LS. Optimal transcriptional regulation of dynamic bacterial responses to sudden drug exposures. Biophys J. 2022 Nov 1;121(21):4137-4152. doi: 10.1016/j.bpj.2022.09.028. Epub 2022 Sep 26. PubMed PMID: 36168291; PubMed Central PMCID: PMC9675034.

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Mould DL, Stevanovic M, Ashare A, Schultz D, Hogan DA. Metabolic basis for the evolution of a common pathogenic Pseudomonas aeruginosa variant. Elife. 2022 May 3;11. doi: 10.7554/eLife.76555. PubMed PMID: 35502894; PubMed Central PMCID: PMC9224983.

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Stevanovic M, Boukéké-Lesplulier T, Hupe L, Hasty J, Bittihn P, Schultz D. Nutrient Gradients Mediate Complex Colony-Level Antibiotic Responses in Structured Microbial Populations. Front Microbiol. 2022;13:740259. doi: 10.3389/fmicb.2022.740259. eCollection 2022. PubMed PMID: 35572643; PubMed Central PMCID: PMC9093743.

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Webster SS, Mathelié-Guinlet M, Verissimo AF, Schultz D, Viljoen A, Lee CK, Schmidt WC, Wong GCL, Dufrêne YF, O'Toole GA. Force-Induced Changes of PilY1 Drive Surface Sensing by Pseudomonas aeruginosa. mBio. 2021 Feb 22;13(1):e0375421. doi: 10.1128/mbio.03754-21. Epub 2022 Feb 1. PubMed PMID: 35100866; PubMed Central PMCID: PMC8806160.

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O'Toole GA, Crabbé A, Kümmerli R, LiPuma JJ, Bomberger JM, Davies JC, Limoli D, Phelan VV, Bliska JB, DePas WH, Dietrich LE, Hampton TH, Hunter R, Khursigara CM, Price-Whelan A, Ashare A, Cramer RA, Goldberg JB, Harrison F, Hogan DA, Henson MA, Madden DR, Mayers JR, Nadell C, Newman D, Prince A, Rivett DW, Schwartzman JD, Schultz D, Sheppard DC, Smyth AR, Spero MA, Stanton BA, Turner PE, van der Gast C, Whelan FJ, Whitaker R, Whiteson K. Model Systems to Study the Chronic, Polymicrobial Infections in Cystic Fibrosis: Current Approaches and Exploring Future Directions. mBio. 2021 Oct 26;12(5):e0176321. doi: 10.1128/mBio.01763-21. Epub 2021 Sep 21. PubMed PMID: 34544277; PubMed Central PMCID: PMC8546538.

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Kowalski CH, Morelli KA, Schultz D, Nadell CD, Cramer RA. Fungal biofilm architecture produces hypoxic microenvironments that drive antifungal resistance. Proc Natl Acad Sci U S A. 2020 Sep 8;117(36):22473-22483. doi: 10.1073/pnas.2003700117. Epub 2020 Aug 26. PubMed PMID: 32848055; PubMed Central PMCID: PMC7486789.

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Kaminski Strauss S, Schirman D, Jona G, Brooks AN, Kunjapur AM, Nguyen Ba AN, Flint A, Solt A, Mershin A, Dixit A, Yona AH, Csörgő B, Busby BP, Hennig BP, Pál C, Schraivogel D, Schultz D, Wernick DG, Agashe D, Levi D, Zabezhinsky D, Russ D, Sass E, Tamar E, Herz E, Levy ED, Church GM, Yelin I, Nachman I, Gerst JE, Georgeson JM, Adamala KP, Steinmetz LM, Rübsam M, Ralser M, Klutstein M, Desai MM, Walunjkar N, Yin N, Aharon Hefetz N, Jakimo N, Snitser O, Adini O, Kumar P, Soo Hoo Smith R, Zeidan R, Hazan R, Rak R, Kishony R, Johnson S, Nouriel S, Vonesch SC, Foster S, Dagan T, Wein T, Karydis T, Wannier TM, Stiles T, Olin-Sandoval V, Mueller WF, Bar-On YM, Dahan O, Pilpel Y. Evolthon: A community endeavor to evolve lab evolution. PLoS Biol. 2019 Mar;17(3):e3000182. doi: 10.1371/journal.pbio.3000182. eCollection 2019 Mar. PubMed PMID: 30925180; PubMed Central PMCID: PMC6440615.

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Wehrens M, Ershov D, Rozendaal R, Walker N, Schultz D, Kishony R, Levin PA, Tans SJ. Size Laws and Division Ring Dynamics in Filamentous Escherichia coli cells. Curr Biol. 2018 Mar 19;28(6):972-979.e5. doi: 10.1016/j.cub.2018.02.006. Epub 2018 Mar 1. PubMed PMID: 29502951.

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Schultz D, Palmer AC, Kishony R. Regulatory Dynamics Determine Cell Fate following Abrupt Antibiotic Exposure. Cell Syst. 2017 Nov 22;5(5):509-517.e3. doi: 10.1016/j.cels.2017.10.002. Epub 2017 Nov 1. PubMed PMID: 29102611; PubMed Central PMCID: PMC5857293.

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Schultz D. Coordination of cell decisions and promotion of phenotypic diversity in B. subtilis via pulsed behavior of the phosphorelay. Bioessays. 2016 May;38(5):440-5. doi: 10.1002/bies.201500199. Epub 2016 Mar 4. Review. PubMed PMID: 26941227.

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Ben-Jacob E, Lu M, Schultz D, Onuchic JN. The physics of bacterial decision making. Front Cell Infect Microbiol. 2014;4:154. doi: 10.3389/fcimb.2014.00154. eCollection 2014. Review. PubMed PMID: 25401094; PubMed Central PMCID: PMC4214203.

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Schultz D, Kishony R. Optimization and control in bacterial lag phase. BMC Biol. 2013 Dec 16;11:120. doi: 10.1186/1741-7007-11-120. PubMed PMID: 24377387; PubMed Central PMCID: PMC3877865.

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Schultz D, Lu M, Stavropoulos T, Onuchic J, Ben-Jacob E. Turning oscillations into opportunities: lessons from a bacterial decision gate. Sci Rep. 2013;3:1668. doi: 10.1038/srep01668. PubMed PMID: 23591544; PubMed Central PMCID: PMC3627974.

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Schultz D, Onuchic JN, Ben-Jacob E. Turning death into creative force during biofilm engineering. Proc Natl Acad Sci U S A. 2012 Nov 13;109(46):18633-4. doi: 10.1073/pnas.1215227109. Epub 2012 Nov 1. PubMed PMID: 23118336; PubMed Central PMCID: PMC3503156.

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Ben-Jacob E, Schultz D. Bacteria determine fate by playing dice with controlled odds. Proc Natl Acad Sci U S A. 2010 Jul 27;107(30):13197-8. doi: 10.1073/pnas.1008254107. Epub 2010 Jul 21. PubMed PMID: 20660309; PubMed Central PMCID: PMC2922178.

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Schultz D, Wolynes PG, Ben Jacob E, Onuchic JN. Deciding fate in adverse times: sporulation and competence in Bacillus subtilis. Proc Natl Acad Sci U S A. 2009 Dec 15;106(50):21027-34. doi: 10.1073/pnas.0912185106. Epub 2009 Dec 7. PubMed PMID: 19995980; PubMed Central PMCID: PMC2795487.

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Schultz D, Walczak AM, Onuchic JN, Wolynes PG. Extinction and resurrection in gene networks. Proc Natl Acad Sci U S A. 2008 Dec 9;105(49):19165-70. doi: 10.1073/pnas.0810366105. Epub 2008 Nov 25. PubMed PMID: 19033463; PubMed Central PMCID: PMC2614733.

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Schultz D, Ben Jacob E, Onuchic JN, Wolynes PG. Molecular level stochastic model for competence cycles in Bacillus subtilis. Proc Natl Acad Sci U S A. 2007 Nov 6;104(45):17582-7. doi: 10.1073/pnas.0707965104. Epub 2007 Oct 25. PubMed PMID: 17962411; PubMed Central PMCID: PMC2077070.

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Schultz D, Onuchic JN, Wolynes PG. Understanding stochastic simulations of the smallest genetic networks. J Chem Phys. 2007 Jun 28;126(24):245102. doi: 10.1063/1.2741544. PubMed PMID: 17614590.

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Hornos JE, Schultz D, Innocentini GC, Wang J, Walczak AM, Onuchic JN, Wolynes PG. Self-regulating gene: an exact solution. Phys Rev E Stat Nonlin Soft Matter Phys. 2005 Nov;72(5 Pt 1):051907. doi: 10.1103/PhysRevE.72.051907. Epub 2005 Nov 4. PubMed PMID: 16383645.

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Schultz D, Droppa R Jr, Alvarez F, dos Santos MC. Stability of small carbon-nitride heterofullerenes. Phys Rev Lett. 2003 Jan 10;90(1):015501. doi: 10.1103/PhysRevLett.90.015501. Epub 2003 Jan 2. PubMed PMID: 12570622.