My Bibliography

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Gilliland A, Chan JJ, De Wolfe TJ, Yang H, Vallance BA. Pathobionts in Inflammatory Bowel Disease: Origins, Underlying Mechanisms, and Implications for Clinical Care. Gastroenterology. 2024 Jan;166(1):44-58. doi: 10.1053/j.gastro.2023.09.019. Epub 2023 Sep 20. Review. PubMed PMID: 37734419.

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De Wolfe TJ, Wright ES. Multi-factorial examination of amplicon sequencing workflows from sample preparation to bioinformatic analysis. BMC Microbiol. 2023 Apr 19;23(1):107. doi: 10.1186/s12866-023-02851-8. PubMed PMID: 37076812; PubMed Central PMCID: PMC10114302.

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Donnelly AE, Narayanan N, Birer-Williams CMC, DeWolfe TJ, Chu RK, Anderton CR, Wright ES. Balancing Trade-Offs Imposed by Growth Media and Mass Spectrometry for Bacterial Exometabolomics. Appl Environ Microbiol. 2022 Oct 26;88(20):e0092222. doi: 10.1128/aem.00922-22. Epub 2022 Oct 5. PubMed PMID: 36197102; PubMed Central PMCID: PMC9599359.

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De Wolfe TJ, Arefin MR, Benezra A, Rebolleda Gómez M. Chasing Ghosts: Race, Racism, and the Future of Microbiome Research. mSystems. 2021 Oct 26;6(5):e0060421. doi: 10.1128/mSystems.00604-21. Epub 2021 Oct 12. PubMed PMID: 34636673; PubMed Central PMCID: PMC8510520.

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Kates AE, Gaulke I, De Wolfe T, Zimbric M, Haight K, Watson L, Suen G, Kim K, Safdar N. Fecal microbiota transplantation for patients on antibiotic treatment with C. difficile infection history (GRAFT): Study protocol for a phase II, randomized, double-blind, placebo-controlled trial to prevent recurrent C. difficile infections. Contemp Clin Trials Commun. 2020 Jun;18:100576. doi: 10.1016/j.conctc.2020.100576. eCollection 2020 Jun. PubMed PMID: 32518854; PubMed Central PMCID: PMC7270544.

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De Wolfe TJ, Safdar N, Meller M, Marx J Jr, Pfau PR, Nelsen EM, Benson ME, Soni A, Reichelderfer M, Duster M, Gopal DV. A Prospective, Randomized Comparison of Duodenoscope Reprocessing Surveillance Methods. Can J Gastroenterol Hepatol. 2019;2019:1959141. doi: 10.1155/2019/1959141. eCollection 2019. PubMed PMID: 31828050; PubMed Central PMCID: PMC6885784.

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De Wolfe TJ, Kates AE, Barko L, Darien BJ, Safdar N. Modified Mouse Model of Clostridioides difficile Infection as a Platform for Probiotic Efficacy Studies. Antimicrob Agents Chemother. 2019 Jul;63(7). doi: 10.1128/AAC.00111-19. Print 2019 Jul. PubMed PMID: 30988143; PubMed Central PMCID: PMC6591643.

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De Wolfe TJ, Eggers S, Barker AK, Kates AE, Dill-McFarland KA, Suen G, Safdar N. Oral probiotic combination of Lactobacillus and Bifidobacterium alters the gastrointestinal microbiota during antibiotic treatment for Clostridium difficile infection. PLoS One. 2018;13(9):e0204253. doi: 10.1371/journal.pone.0204253. eCollection 2018. PubMed PMID: 30265691; PubMed Central PMCID: PMC6161886.

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Wyche TP, Alvarenga RFR, Piotrowski JS, Duster MN, Warrack SR, Cornilescu G, De Wolfe TJ, Hou Y, Braun DR, Ellis GA, Simpkins SW, Nelson J, Myers CL, Steele J, Mori H, Safdar N, Markley JL, Rajski SR, Bugni TS. Chemical Genomics, Structure Elucidation, and in Vivo Studies of the Marine-Derived Anticlostridial Ecteinamycin. ACS Chem Biol. 2017 Sep 15;12(9):2287-2295. doi: 10.1021/acschembio.7b00388. Epub 2017 Jul 26. PubMed PMID: 28708379; PubMed Central PMCID: PMC5697710.

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Julliard W, De Wolfe TJ, Fechner JH, Safdar N, Agni R, Mezrich JD. Amelioration of Clostridium difficile Infection in Mice by Dietary Supplementation With Indole-3-carbinol. Ann Surg. 2017 Jun;265(6):1183-1191. doi: 10.1097/SLA.0000000000001830. PubMed PMID: 27280500; PubMed Central PMCID: PMC5743052.

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Zellmer C, De Wolfe TJ, Van Hoof S, Blakney R, Safdar N. Patient Perspectives on Fecal Microbiota Transplantation for Clostridium Difficile Infection. Infect Dis Ther. 2016 Jun;5(2):155-64. doi: 10.1007/s40121-016-0106-1. Epub 2016 Apr 5. PubMed PMID: 27048199; PubMed Central PMCID: PMC4929085.

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Aktas B, De Wolfe TJ, Safdar N, Darien BJ, Steele JL. The Impact of Lactobacillus casei on the Composition of the Cecal Microbiota and Innate Immune System Is Strain Specific. PLoS One. 2016;11(5):e0156374. doi: 10.1371/journal.pone.0156374. eCollection 2016. PubMed PMID: 27244133; PubMed Central PMCID: PMC4887021.

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Aktas B, De Wolfe TJ, Tandee K, Safdar N, Darien BJ, Steele JL. The Effect of Lactobacillus casei 32G on the Mouse Cecum Microbiota and Innate Immune Response Is Dose and Time Dependent. PLoS One. 2015;10(12):e0145784. doi: 10.1371/journal.pone.0145784. eCollection 2015. PubMed PMID: 26714177; PubMed Central PMCID: PMC4705108.

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Sawin EA, De Wolfe TJ, Aktas B, Stroup BM, Murali SG, Steele JL, Ney DM. Glycomacropeptide is a prebiotic that reduces Desulfovibrio bacteria, increases cecal short-chain fatty acids, and is anti-inflammatory in mice. Am J Physiol Gastrointest Liver Physiol. 2015 Oct 1;309(7):G590-601. doi: 10.1152/ajpgi.00211.2015. Epub 2015 Aug 6. PubMed PMID: 26251473; PubMed Central PMCID: PMC4593820.

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Brooks VJ, De Wolfe TJ, Paulus TJ, Xu J, Cai J, Keuler NS, Godbee RG, Peek SF, McGuirk SM, Darien BJ. Ethnoveterinary application of Morinda citrifolia fruit puree on a commercial heifer rearing facility with endemic salmonellosis. Afr J Tradit Complement Altern Med. 2012;10(1):1-8. doi: 10.4314/ajtcam.v10i1.1. eCollection 2012. PubMed PMID: 24082318; PubMed Central PMCID: PMC3746350.