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Käfer J, Talianová M, Bigot T, Michu E, Guéguen L, Widmer A, Žlůvová J, Glémin S, Marais GA. Patterns of molecular evolution in dioecious and non-dioecious Silene. J Evol Biol. 2013 Feb;26(2):335-46. doi: 10.1111/jeb.12052. Epub 2012 Dec 3. PubMed PMID: 23206219.
Bigot T, Daubin V, Lassalle F, Perrière G. TPMS: a set of utilities for querying collections of gene trees. BMC Bioinformatics. 2013 Mar 27;14:109. doi: 10.1186/1471-2105-14-109. PubMed PMID: 23530580; PubMed Central PMCID: PMC3655882.
Guéguen L, Gaillard S, Boussau B, Gouy M, Groussin M, Rochette NC, Bigot T, Fournier D, Pouyet F, Cahais V, Bernard A, Scornavacca C, Nabholz B, Haudry A, Dachary L, Galtier N, Belkhir K, Dutheil JY. Bio++: efficient extensible libraries and tools for computational molecular evolution. Mol Biol Evol. 2013 Aug;30(8):1745-50. doi: 10.1093/molbev/mst097. Epub 2013 May 21. PubMed PMID: 23699471.
Ferrandiz-Rovira M, Bigot T, Allainé D, Callait-Cardinal MP, Cohas A. Large-scale genotyping of highly polymorphic loci by next-generation sequencing: how to overcome the challenges to reliably genotype individuals?. Heredity (Edinb). 2015 May;114(5):485-93. doi: 10.1038/hdy.2015.13. Epub 2015 Mar 11. PubMed PMID: 25757407; PubMed Central PMCID: PMC4815514.
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