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Andrew Longhini's Bibliography

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Berlin K, Longhini A, Dayie TK, Fushman D. Deriving quantitative dynamics information for proteins and RNAs using ROTDIF with a graphical user interface. J Biomol NMR. 2013 Dec;57(4):333-52. doi: 10.1007/s10858-013-9791-1. Epub 2013 Oct 30. PubMed PMID: 24170368; PubMed Central PMCID: PMC3939081.

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Alvarado LJ, LeBlanc RM, Longhini AP, Keane SC, Jain N, Yildiz ZF, Tolbert BS, D'Souza VM, Summers MF, Kreutz C, Dayie TK. Regio-selective chemical-enzymatic synthesis of pyrimidine nucleotides facilitates RNA structure and dynamics studies. Chembiochem. 2014 Jul 21;15(11):1573-7. doi: 10.1002/cbic.201402130. Epub 2014 Jun 20. PubMed PMID: 24954297; PubMed Central PMCID: PMC4127085.

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Alvarado LJ, Longhini AP, LeBlanc RM, Chen B, Kreutz C, Dayie TK. Chemo-enzymatic synthesis of selectively ¹³C/¹⁵N-labeled RNA for NMR structural and dynamics studies. Methods Enzymol. 2014;549:133-62. doi: 10.1016/B978-0-12-801122-5.00007-6. PubMed PMID: 25432748; PubMed Central PMCID: PMC5879494.

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Wunderlich CH, Juen MA, LeBlanc RM, Longhini AP, Dayie TK, Kreutz C. Stable isotope-labeled RNA phosphoramidites to facilitate dynamics by NMR. Methods Enzymol. 2015;565:461-94. doi: 10.1016/bs.mie.2015.06.013. Epub 2015 Jul 9. PubMed PMID: 26577742.

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Longhini AP, LeBlanc RM, Becette O, Salguero C, Wunderlich CH, Johnson BA, D'Souza VM, Kreutz C, Dayie TK. Chemo-enzymatic synthesis of site-specific isotopically labeled nucleotides for use in NMR resonance assignment, dynamics and structural characterizations. Nucleic Acids Res. 2016 Apr 7;44(6):e52. doi: 10.1093/nar/gkv1333. Epub 2015 Dec 10. PubMed PMID: 26657632; PubMed Central PMCID: PMC4824079.

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Longhini AP, LeBlanc RM, Dayie TK. Chemo-enzymatic labeling for rapid assignment of RNA molecules. Methods. 2016 Jul 1;103:11-7. doi: 10.1016/j.ymeth.2016.03.015. Epub 2016 Apr 18. Review. PubMed PMID: 27090003.

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LeBlanc RM, Longhini AP, Le Grice SFJ, Johnson BA, Dayie TK. Combining asymmetric 13C-labeling and isotopic filter/edit NOESY: a novel strategy for rapid and logical RNA resonance assignment. Nucleic Acids Res. 2017 Sep 19;45(16):e146. doi: 10.1093/nar/gkx591. PubMed PMID: 28934505; PubMed Central PMCID: PMC5766159.

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Chen B, Longhini AP, Nußbaumer F, Kreutz C, Dinman JD, Dayie TK. CCR5 RNA Pseudoknots: Residue and Site-Specific Labeling correlate Internal Motions with microRNA Binding. Chemistry. 2018 Apr 11;24(21):5462-5468. doi: 10.1002/chem.201705948. Epub 2018 Mar 25. PubMed PMID: 29412477; PubMed Central PMCID: PMC7640883.

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LeBlanc RM, Longhini AP, Tugarinov V, Dayie TK. NMR probing of invisible excited states using selectively labeled RNAs. J Biomol NMR. 2018 Jul;71(3):165-172. doi: 10.1007/s10858-018-0184-3. Epub 2018 Jun 1. PubMed PMID: 29858959.

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Lin Y, Fichou Y, Longhini AP, Llanes LC, Yin P, Bazan GC, Kosik KS, Han S. Liquid-Liquid Phase Separation of Tau Driven by Hydrophobic Interaction Facilitates Fibrillization of Tau. J Mol Biol. 2021 Jan 22;433(2):166731. doi: 10.1016/j.jmb.2020.166731. Epub 2020 Dec 3. PubMed PMID: 33279579; PubMed Central PMCID: PMC7855949.

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Najafi S, Lin Y, Longhini AP, Zhang X, Delaney KT, Kosik KS, Fredrickson GH, Shea JE, Han S. Liquid-liquid phase separation of Tau by self and complex coacervation. Protein Sci. 2021 Jul;30(7):1393-1407. doi: 10.1002/pro.4101. Epub 2021 May 19. PubMed PMID: 33955104; PubMed Central PMCID: PMC8197434.

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LeBlanc RM, Kasprzak WK, Longhini AP, Olenginski LT, Abulwerdi F, Ginocchio S, Shields B, Nyman J, Svirydava M, Del Vecchio C, Ivanic J, Schneekloth JS Jr, Shapiro BA, Dayie TK, Le Grice SFJ. Structural insights of the conserved "priming loop" of hepatitis B virus pre-genomic RNA. J Biomol Struct Dyn. 2022;40(20):9761-9773. doi: 10.1080/07391102.2021.1934544. Epub 2021 Jun 22. PubMed PMID: 34155954; PubMed Central PMCID: PMC10167916.

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Han D, Longhini AP, Zhang X, Hoang V, Wilson MZ, Kosik KS. Dynamic assembly of the mRNA m6A methyltransferase complex is regulated by METTL3 phase separation. PLoS Biol. 2022 Feb;20(2):e3001535. doi: 10.1371/journal.pbio.3001535. eCollection 2022 Feb. PubMed PMID: 35143475; PubMed Central PMCID: PMC8865655.

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Carrettiero DC, Almeida MC, Longhini AP, Rauch JN, Han D, Zhang X, Najafi S, Gestwicki JE, Kosik KS. Stress routes clients to the proteasome via a BAG2 ubiquitin-independent degradation condensate. Nat Commun. 2022 Jun 2;13(1):3074. doi: 10.1038/s41467-022-30751-4. PubMed PMID: 35654899; PubMed Central PMCID: PMC9163039.

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Taiwo KM, Nam H, LeBlanc RM, Longhini AP, Dayie TK. Cross-correlated relaxation rates provide facile exchange signature in selectively labeled RNA. J Magn Reson. 2022 Sep;342:107245. doi: 10.1016/j.jmr.2022.107245. Epub 2022 Jun 3. PubMed PMID: 35908529.

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Olenginski LT, Attionu SK, Henninger EN, LeBlanc RM, Longhini AP, Dayie TK. Hepatitis B Virus Epsilon (ε) RNA Element: Dynamic Regulator of Viral Replication and Attractive Therapeutic Target. Viruses. 2023 Sep 12;15(9). doi: 10.3390/v15091913. Review. PubMed PMID: 37766319; PubMed Central PMCID: PMC10534774.

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Vigers MP, Lobo S, Najafi S, Dubose A, Tsay K, Ganguly P, Longhini AP, Jin Y, Buratto SK, Kosik KS, Shell MS, Shea JE, Han S. Tau P301L mutation promotes core 4R tauopathy fibril fold through near-surface water structuring and conformational rearrangement. bioRxiv. 2023 Nov 28;. doi: 10.1101/2023.11.28.568818. PubMed PMID: 38077065; PubMed Central PMCID: PMC10705247.

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Longhini AP, DuBose A, Lobo S, Vijayan V, Bai Y, Rivera EK, Sala-Jarque J, Nikitina A, Carrettiero DC, Unger M, Sclafani O, Fu V, Vigers M, Buee L, Landrieu I, Shell S, Shea JE, Han S, Kosik KS. Precision Proteoform Design for 4R Tau Isoform Selective Templated Aggregation. bioRxiv. 2023 Nov 28;. doi: 10.1101/2023.08.31.555649. PubMed PMID: 37693456; PubMed Central PMCID: PMC10491155.

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Bai Y, Camargo CM, Glasauer SMK, Gifford R, Tian X, Longhini AP, Kosik KS. Single-cell mapping of lipid metabolites using an infrared probe in human-derived model systems. Nat Commun. 2024 Jan 8;15(1):350. doi: 10.1038/s41467-023-44675-0. PubMed PMID: 38191490; PubMed Central PMCID: PMC10774263.

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