My Bibliography

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Martins DM, Manda JM, Goard MJ, Parker PRL. Building egocentric models of local space from retinal input. Curr Biol. 2024 Dec 2;34(23):R1185-R1202. doi: 10.1016/j.cub.2024.10.057. Review. PubMed PMID: 39626632; PubMed Central PMCID: PMC11620475.

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Yoon IHR, Henselman-Petrusek G, Yu Y, Ghrist R, Smith SL, Giusti C. Tracking the topology of neural manifolds across populations. Proc Natl Acad Sci U S A. 2024 Nov 12;121(46):e2407997121. doi: 10.1073/pnas.2407997121. Epub 2024 Nov 8. PubMed PMID: 39514312; PubMed Central PMCID: PMC11573501.

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Skyberg RJ, Niell CM. Natural visual behavior and active sensing in the mouse. Curr Opin Neurobiol. 2024 Jun;86:102882. doi: 10.1016/j.conb.2024.102882. Epub 2024 May 4. Review. PubMed PMID: 38704868; PubMed Central PMCID: PMC11254345.

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Yu CH, Yu Y, Adsit LM, Chang JT, Barchini J, Moberly AH, Benisty H, Kim J, Young BK, Heng K, Farinella DM, Leikvoll A, Pavan R, Vistein R, Nanfito BR, Hildebrand DGC, Otero-Coronel S, Vaziri A, Goldberg JL, Ricci AJ, Fitzpatrick D, Cardin JA, Higley MJ, Smith GB, Kara P, Nielsen KJ, Smith IT, Smith SL. The Cousa objective: a long-working distance air objective for multiphoton imaging in vivo. Nat Methods. 2024 Jan;21(1):132-141. doi: 10.1038/s41592-023-02098-1. Epub 2023 Dec 21. PubMed PMID: 38129618; PubMed Central PMCID: PMC10776402.

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Parker PRL, Martins DM, Leonard ESP, Casey NM, Sharp SL, Abe ETT, Smear MC, Yates JL, Mitchell JF, Niell CM. A dynamic sequence of visual processing initiated by gaze shifts. Nat Neurosci. 2023 Dec;26(12):2192-2202. doi: 10.1038/s41593-023-01481-7. Epub 2023 Nov 23. PubMed PMID: 37996524; PubMed Central PMCID: PMC11270614.

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Xu A, Hou Y, Niell CM, Beyeler M. Multimodal Deep Learning Model Unveils Behavioral Dynamics of V1 Activity in Freely Moving Mice. Adv Neural Inf Process Syst. 2023 Dec;36:15341-15357. PubMed PMID: 39005944; PubMed Central PMCID: PMC11242920.

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Xu A, Hou Y, Niell CM, Beyeler M. Multimodal Deep Learning Model Unveils Behavioral Dynamics of V1 Activity in Freely Moving Mice. bioRxiv. 2023 May 30;. doi: 10.1101/2023.05.30.542912. PubMed PMID: 37398256; PubMed Central PMCID: PMC10312557.

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Parker PRL, Abe ETT, Leonard ESP, Martins DM, Niell CM. Joint coding of visual input and eye/head position in V1 of freely moving mice. Neuron. 2022 Dec 7;110(23):3897-3906.e5. doi: 10.1016/j.neuron.2022.08.029. Epub 2022 Sep 21. PubMed PMID: 36137549; PubMed Central PMCID: PMC9742335.

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Parker PRL, Abe ETT, Beatie NT, Leonard ESP, Martins DM, Sharp SL, Wyrick DG, Mazzucato L, Niell CM. Distance estimation from monocular cues in an ethological visuomotor task. Elife. 2022 Sep 20;11. doi: 10.7554/eLife.74708. PubMed PMID: 36125119; PubMed Central PMCID: PMC9489205.

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Yu Y, Stirman JN, Dorsett CR, Smith SL. Selective representations of texture and motion in mouse higher visual areas. Curr Biol. 2022 Jul 11;32(13):2810-2820.e5. doi: 10.1016/j.cub.2022.04.091. Epub 2022 May 23. PubMed PMID: 35609609; PubMed Central PMCID: PMC9283294.

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Redman WT, Wolcott NS, Montelisciani L, Luna G, Marks TD, Sit KK, Yu CH, Smith S, Goard MJ. Long-term transverse imaging of the hippocampus with glass microperiscopes. Elife. 2022 Jul 1;11. doi: 10.7554/eLife.75391. PubMed PMID: 35775393; PubMed Central PMCID: PMC9249394.

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Yu CH, Stirman JN, Yu Y, Hira R, Smith SL. Diesel2p mesoscope with dual independent scan engines for flexible capture of dynamics in distributed neural circuitry. Nat Commun. 2021 Nov 17;12(1):6639. doi: 10.1038/s41467-021-26736-4. PubMed PMID: 34789723; PubMed Central PMCID: PMC8599518.

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Clough M, Chen IA, Park SW, Ahrens AM, Stirman JN, Smith SL, Chen JL. Flexible simultaneous mesoscale two-photon imaging of neural activity at high speeds. Nat Commun. 2021 Nov 17;12(1):6638. doi: 10.1038/s41467-021-26737-3. PubMed PMID: 34789730; PubMed Central PMCID: PMC8599611.

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Townsend LB, Jones KA, Dorsett CR, Philpot BD, Smith SL. Deficits in higher visual area representations in a mouse model of Angelman syndrome. J Neurodev Disord. 2020 Oct 19;12(1):28. doi: 10.1186/s11689-020-09329-y. PubMed PMID: 33076843; PubMed Central PMCID: PMC7574469.

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Yu Y, Hira R, Stirman JN, Yu W, Smith IT, Smith SL. Mice use robust and common strategies to discriminate natural scenes. Sci Rep. 2018 Jan 22;8(1):1379. doi: 10.1038/s41598-017-19108-w. PubMed PMID: 29358739; PubMed Central PMCID: PMC5778028.

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Wallace ML, van Woerden GM, Elgersma Y, Smith SL, Philpot BD. Ube3a loss increases excitability and blunts orientation tuning in the visual cortex of Angelman syndrome model mice. J Neurophysiol. 2017 Jul 1;118(1):634-646. doi: 10.1152/jn.00618.2016. Epub 2017 May 3. PubMed PMID: 28468997; PubMed Central PMCID: PMC5511875.

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Smith IT, Townsend LB, Huh R, Zhu H, Smith SL. Stream-dependent development of higher visual cortical areas. Nat Neurosci. 2017 Feb;20(2):200-208. doi: 10.1038/nn.4469. Epub 2017 Jan 9. PubMed PMID: 28067905; PubMed Central PMCID: PMC5272868.

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Townsend LB, Smith SL. Genotype- and sex-dependent effects of altered Cntnap2 expression on the function of visual cortical areas. J Neurodev Disord. 2017;9:2. doi: 10.1186/s11689-016-9182-5. eCollection 2017. PubMed PMID: 28115996; PubMed Central PMCID: PMC5244519.

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Stirman J, Townsend LB, Smith S. A touchscreen based global motion perception task for mice. Vision Res. 2016 Oct;127:74-83. doi: 10.1016/j.visres.2016.07.006. Epub 2016 Aug 9. PubMed PMID: 27497283; PubMed Central PMCID: PMC5035629.

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Harris KD, Quiroga RQ, Freeman J, Smith SL. Improving data quality in neuronal population recordings. Nat Neurosci. 2016 Aug 26;19(9):1165-74. doi: 10.1038/nn.4365. Review. PubMed PMID: 27571195; PubMed Central PMCID: PMC5244825.

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Ji N, Freeman J, Smith SL. Technologies for imaging neural activity in large volumes. Nat Neurosci. 2016 Aug 26;19(9):1154-64. doi: 10.1038/nn.4358. Review. PubMed PMID: 27571194; PubMed Central PMCID: PMC5244827.

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Stirman JN, Smith IT, Kudenov MW, Smith SL. Wide field-of-view, multi-region, two-photon imaging of neuronal activity in the mammalian brain. Nat Biotechnol. 2016 Aug;34(8):857-62. doi: 10.1038/nbt.3594. Epub 2016 Jun 27. PubMed PMID: 27347754; PubMed Central PMCID: PMC4980167.

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Nakamura A, Swahari V, Plestant C, Smith I, McCoy E, Smith S, Moy SS, Anton ES, Deshmukh M. Bcl-xL Is Essential for the Survival and Function of Differentiated Neurons in the Cortex That Control Complex Behaviors. J Neurosci. 2016 May 18;36(20):5448-61. doi: 10.1523/JNEUROSCI.4247-15.2016. PubMed PMID: 27194326; PubMed Central PMCID: PMC4871982.

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Kim H, Kunz PA, Mooney R, Philpot BD, Smith SL. Maternal Loss of Ube3a Impairs Experience-Driven Dendritic Spine Maintenance in the Developing Visual Cortex. J Neurosci. 2016 Apr 27;36(17):4888-94. doi: 10.1523/JNEUROSCI.4204-15.2016. PubMed PMID: 27122043; PubMed Central PMCID: PMC4846678.

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Larsen RS, Smith IT, Miriyala J, Han JE, Corlew RJ, Smith SL, Philpot BD. Synapse-specific control of experience-dependent plasticity by presynaptic NMDA receptors. Neuron. 2014 Aug 20;83(4):879-93. doi: 10.1016/j.neuron.2014.07.039. PubMed PMID: 25144876; PubMed Central PMCID: PMC4181612.

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Smith IT, Smith SL. Getting it through your thick skull. Nat Neurosci. 2014 Aug;17(8):1018-9. doi: 10.1038/nn.3766. PubMed PMID: 25065436.

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Cottam JC, Smith SL, Häusser M. Target-specific effects of somatostatin-expressing interneurons on neocortical visual processing. J Neurosci. 2013 Dec 11;33(50):19567-78. doi: 10.1523/JNEUROSCI.2624-13.2013. PubMed PMID: 24336721; PubMed Central PMCID: PMC3858626.

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Smith SL, Smith IT, Branco T, Häusser M. Dendritic spikes enhance stimulus selectivity in cortical neurons in vivo. Nature. 2013 Nov 7;503(7474):115-20. doi: 10.1038/nature12600. Epub 2013 Oct 27. PubMed PMID: 24162850; PubMed Central PMCID: PMC6319606.

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Marra V, Burden JJ, Thorpe JR, Smith IT, Smith SL, Häusser M, Branco T, Staras K. A preferentially segregated recycling vesicle pool of limited size supports neurotransmission in native central synapses. Neuron. 2012 Nov 8;76(3):579-89. doi: 10.1016/j.neuron.2012.08.042. PubMed PMID: 23141069; PubMed Central PMCID: PMC3526798.

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Smith SL, Smith IT. Life imitates op art. Nat Neurosci. 2011 Jun 27;14(7):803-4. doi: 10.1038/nn.2865. PubMed PMID: 21709673.

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Smith SL, Häusser M. Parallel processing of visual space by neighboring neurons in mouse visual cortex. Nat Neurosci. 2010 Sep;13(9):1144-9. doi: 10.1038/nn.2620. Epub 2010 Aug 15. PubMed PMID: 20711183; PubMed Central PMCID: PMC2999824.

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Smith SL, Trachtenberg JT. The refinement of ipsilateral eye retinotopic maps is increased by removing the dominant contralateral eye in adult mice. PLoS One. 2010 Mar 29;5(3):e9925. doi: 10.1371/journal.pone.0009925. PubMed PMID: 20369001; PubMed Central PMCID: PMC2848025.

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Faguet J, Maranhao B, Smith SL, Trachtenberg JT. Ipsilateral eye cortical maps are uniquely sensitive to binocular plasticity. J Neurophysiol. 2009 Feb;101(2):855-61. doi: 10.1152/jn.90893.2008. Epub 2008 Dec 3. PubMed PMID: 19052109; PubMed Central PMCID: PMC2657065.

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Häusser M, Smith SL. Neuroscience: controlling neural circuits with light. Nature. 2007 Apr 5;446(7136):617-9. doi: 10.1038/446617a. PubMed PMID: 17410162.

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Smith SL, Trachtenberg JT. Experience-dependent binocular competition in the visual cortex begins at eye opening. Nat Neurosci. 2007 Mar;10(3):370-5. doi: 10.1038/nn1844. Epub 2007 Feb 11. PubMed PMID: 17293862.

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Smith SL, Otis TS. Pattern-dependent, simultaneous plasticity differentially transforms the input-output relationship of a feedforward circuit. Proc Natl Acad Sci U S A. 2005 Oct 11;102(41):14901-6. doi: 10.1073/pnas.0505028102. Epub 2005 Sep 30. PubMed PMID: 16199519; PubMed Central PMCID: PMC1253560.

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Häusser M, Raman IM, Otis T, Smith SL, Nelson A, du Lac S, Loewenstein Y, Mahon S, Pennartz C, Cohen I, Yarom Y. The beat goes on: spontaneous firing in mammalian neuronal microcircuits. J Neurosci. 2004 Oct 20;24(42):9215-9. doi: 10.1523/JNEUROSCI.3375-04.2004. Review. PubMed PMID: 15496653; PubMed Central PMCID: PMC6730100.

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Smith SL, Judy JW, Otis TS. An ultra small array of electrodes for stimulating multiple inputs into a single neuron. J Neurosci Methods. 2004 Feb 15;133(1-2):109-14. doi: 10.1016/j.jneumeth.2003.10.001. PubMed PMID: 14757351.

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Smith SL, Otis TS. Persistent changes in spontaneous firing of Purkinje neurons triggered by the nitric oxide signaling cascade. J Neurosci. 2003 Jan 15;23(2):367-72. doi: 10.1523/JNEUROSCI.23-02-00367.2003. PubMed PMID: 12533595; PubMed Central PMCID: PMC6741890.