My Bibliography

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Bart R, Ronald P, Hake S. Fertility versus disease resistance, a hard choice. Genes Dev. 2006 May 15;20(10):1215-7. doi: 10.1101/gad.1437706. Review. PubMed PMID: 16702399.

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Bart R, Chern M, Park CJ, Bartley L, Ronald PC. A novel system for gene silencing using siRNAs in rice leaf and stem-derived protoplasts. Plant Methods. 2006 Jun 29;2:13. doi: 10.1186/1746-4811-2-13. PubMed PMID: 16808845; PubMed Central PMCID: PMC1524957.

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Park CJ, Peng Y, Chen X, Dardick C, Ruan D, Bart R, Canlas PE, Ronald PC. Rice XB15, a protein phosphatase 2C, negatively regulates cell death and XA21-mediated innate immunity. PLoS Biol. 2008 Sep 23;6(9):e231. doi: 10.1371/journal.pbio.0060231. PubMed PMID: 18817453; PubMed Central PMCID: PMC2553837.

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Ding X, Richter T, Chen M, Fujii H, Seo YS, Xie M, Zheng X, Kanrar S, Stevenson RA, Dardick C, Li Y, Jiang H, Zhang Y, Yu F, Bartley LE, Chern M, Bart R, Chen X, Zhu L, Farmerie WG, Gribskov M, Zhu JK, Fromm ME, Ronald PC, Song WY. A rice kinase-protein interaction map. Plant Physiol. 2009 Mar;149(3):1478-92. doi: 10.1104/pp.108.128298. Epub 2008 Dec 24. PubMed PMID: 19109415; PubMed Central PMCID: PMC2649385.

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Park CJ, Bart R, Chern M, Canlas PE, Bai W, Ronald PC. Overexpression of the endoplasmic reticulum chaperone BiP3 regulates XA21-mediated innate immunity in rice. PLoS One. 2010 Feb 17;5(2):e9262. doi: 10.1371/journal.pone.0009262. PubMed PMID: 20174657; PubMed Central PMCID: PMC2822859.

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Bart RS, Chern M, Vega-Sánchez ME, Canlas P, Ronald PC. Rice Snl6, a cinnamoyl-CoA reductase-like gene family member, is required for NH1-mediated immunity to Xanthomonas oryzae pv. oryzae. PLoS Genet. 2010 Sep 16;6(9):e1001123. doi: 10.1371/journal.pgen.1001123. PubMed PMID: 20862311; PubMed Central PMCID: PMC2940737.

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Bart R, Cohn M, Kassen A, McCallum EJ, Shybut M, Petriello A, Krasileva K, Dahlbeck D, Medina C, Alicai T, Kumar L, Moreira LM, Rodrigues Neto J, Verdier V, Santana MA, Kositcharoenkul N, Vanderschuren H, Gruissem W, Bernal A, Staskawicz BJ. High-throughput genomic sequencing of cassava bacterial blight strains identifies conserved effectors to target for durable resistance. Proc Natl Acad Sci U S A. 2012 Jul 10;109(28):E1972-9. doi: 10.1073/pnas.1208003109. Epub 2012 Jun 13. PubMed PMID: 22699502; PubMed Central PMCID: PMC3396514.

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Arrieta-Ortiz ML, Rodríguez-R LM, Pérez-Quintero Á, Poulin L, Díaz AC, Arias Rojas N, Trujillo C, Restrepo Benavides M, Bart R, Boch J, Boureau T, Darrasse A, David P, Dugé de Bernonville T, Fontanilla P, Gagnevin L, Guérin F, Jacques MA, Lauber E, Lefeuvre P, Medina C, Medina E, Montenegro N, Muñoz Bodnar A, Noël LD, Ortiz Quiñones JF, Osorio D, Pardo C, Patil PB, Poussier S, Pruvost O, Robène-Soustrade I, Ryan RP, Tabima J, Urrego Morales OG, Vernière C, Carrere S, Verdier V, Szurek B, Restrepo S, López C, Koebnik R, Bernal A. Genomic survey of pathogenicity determinants and VNTR markers in the cassava bacterial pathogen Xanthomonas axonopodis pv. Manihotis strain CIO151. PLoS One. 2013;8(11):e79704. doi: 10.1371/journal.pone.0079704. eCollection 2013. PubMed PMID: 24278159; PubMed Central PMCID: PMC3838355.

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Cohn M, Bart RS, Shybut M, Dahlbeck D, Gomez M, Morbitzer R, Hou BH, Frommer WB, Lahaye T, Staskawicz BJ. Xanthomonas axonopodis virulence is promoted by a transcription activator-like effector-mediated induction of a SWEET sugar transporter in cassava. Mol Plant Microbe Interact. 2014 Nov;27(11):1186-98. doi: 10.1094/MPMI-06-14-0161-R. PubMed PMID: 25083909.

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Mutka AM, Bart RS. Image-based phenotyping of plant disease symptoms. Front Plant Sci. 2014;5:734. doi: 10.3389/fpls.2014.00734. eCollection 2014. PubMed PMID: 25601871; PubMed Central PMCID: PMC4283508.

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Timilsina S, Jibrin MO, Potnis N, Minsavage GV, Kebede M, Schwartz A, Bart R, Staskawicz B, Boyer C, Vallad GE, Pruvost O, Jones JB, Goss EM. Multilocus sequence analysis of xanthomonads causing bacterial spot of tomato and pepper plants reveals strains generated by recombination among species and recent global spread of Xanthomonas gardneri. Appl Environ Microbiol. 2015 Feb;81(4):1520-9. doi: 10.1128/AEM.03000-14. PubMed PMID: 25527544; PubMed Central PMCID: PMC4309686.

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Schwessinger B, Bart R, Krasileva KV, Coaker G. Focus issue on plant immunity: from model systems to crop species. Front Plant Sci. 2015;6:195. doi: 10.3389/fpls.2015.00195. eCollection 2015. PubMed PMID: 25859255; PubMed Central PMCID: PMC4374389.

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Schwartz AR, Potnis N, Timilsina S, Wilson M, Patané J, Martins J Jr, Minsavage GV, Dahlbeck D, Akhunova A, Almeida N, Vallad GE, Barak JD, White FF, Miller SA, Ritchie D, Goss E, Bart RS, Setubal JC, Jones JB, Staskawicz BJ. Phylogenomics of Xanthomonas field strains infecting pepper and tomato reveals diversity in effector repertoires and identifies determinants of host specificity. Front Microbiol. 2015;6:535. doi: 10.3389/fmicb.2015.00535. eCollection 2015. PubMed PMID: 26089818; PubMed Central PMCID: PMC4452888.

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Wang H, Beyene G, Zhai J, Feng S, Fahlgren N, Taylor NJ, Bart R, Carrington JC, Jacobsen SE, Ausin I. CG gene body DNA methylation changes and evolution of duplicated genes in cassava. Proc Natl Acad Sci U S A. 2015 Nov 3;112(44):13729-34. doi: 10.1073/pnas.1519067112. Epub 2015 Oct 19. PubMed PMID: 26483493; PubMed Central PMCID: PMC4640745.

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Fahlgren N, Bart R, Herrera-Estrella L, Rellán-Álvarez R, Chitwood DH, Dinneny JR. Plant scientists: GM technology is safe. Science. 2016 Feb 19;351(6275):824. doi: 10.1126/science.351.6275.824-a. Epub 2016 Feb 18. PubMed PMID: 26912883.

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Bredeson JV, Lyons JB, Prochnik SE, Wu GA, Ha CM, Edsinger-Gonzales E, Grimwood J, Schmutz J, Rabbi IY, Egesi C, Nauluvula P, Lebot V, Ndunguru J, Mkamilo G, Bart RS, Setter TL, Gleadow RM, Kulakow P, Ferguson ME, Rounsley S, Rokhsar DS. Sequencing wild and cultivated cassava and related species reveals extensive interspecific hybridization and genetic diversity. Nat Biotechnol. 2016 May;34(5):562-70. doi: 10.1038/nbt.3535. Epub 2016 Apr 18. PubMed PMID: 27088722.

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Chern M, Xu Q, Bart RS, Bai W, Ruan D, Sze-To WH, Canlas PE, Jain R, Chen X, Ronald PC. A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet. 2016 May;12(5):e1006049. doi: 10.1371/journal.pgen.1006049. eCollection 2016 May. PubMed PMID: 27176732; PubMed Central PMCID: PMC4866720.

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Chern M, Xu Q, Bart RS, Bai W, Ruan D, Sze-To WH, Canlas PE, Jain R, Chen X, Ronald PC. Correction: A Genetic Screen Identifies a Requirement for Cysteine-Rich-Receptor-Like Kinases in Rice NH1 (OsNPR1)-Mediated Immunity. PLoS Genet. 2016 Jul;12(7):e1006182. doi: 10.1371/journal.pgen.1006182. eCollection 2016 Jul. PubMed PMID: 27385201; PubMed Central PMCID: PMC4934863.

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Pauli D, Chapman SC, Bart R, Topp CN, Lawrence-Dill CJ, Poland J, Gore MA. The Quest for Understanding Phenotypic Variation via Integrated Approaches in the Field Environment. Plant Physiol. 2016 Oct;172(2):622-634. doi: 10.1104/pp.16.00592. Epub 2016 Aug 1. Review. PubMed PMID: 27482076; PubMed Central PMCID: PMC5047081.

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Mutka AM, Fentress SJ, Sher JW, Berry JC, Pretz C, Nusinow DA, Bart R. Quantitative, Image-Based Phenotyping Methods Provide Insight into Spatial and Temporal Dimensions of Plant Disease. Plant Physiol. 2016 Oct;172(2):650-660. doi: 10.1104/pp.16.00984. Epub 2016 Jul 21. PubMed PMID: 27443602; PubMed Central PMCID: PMC5047107.