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Zhang Y, Yan Y, Meng J, Girotra M, Ramakrishnan S, Roy S. Immune modulation mediated by extracellular vesicles of intestinal organoids is disrupted by opioids. Mucosal Immunol. 2021 Apr 14;. doi: 10.1038/s41385-021-00392-9. [Epub ahead of print] PubMed PMID: 33854193; NIHMSID:NIHMS1673579.
Moidunny S, Benneyworth MA, Titus DJ, Beurel E, Kolli U, Meints J, Jalodia R, Ramakrishnan S, Atkins CM, Roy S. Glycogen synthase kinase-3 inhibition rescues sex-dependent contextual fear memory deficit in human immunodeficiency virus-1 transgenic mice. Br J Pharmacol. 2020 Dec;177(24):5658-5676. doi: 10.1111/bph.15288. Epub 2020 Nov 23. PubMed PMID: 33080056; PubMed Central PMCID: PMC7707089.
Sharma U, Olson RK, Erhart FN, Zhang L, Meng J, Segura B, Banerjee S, Sharma M, Saluja AK, Ramakrishnan S, Abreu MT, Roy S. Prescription Opioids induce Gut Dysbiosis and Exacerbate Colitis in a Murine Model of Inflammatory Bowel Disease. J Crohns Colitis. 2020 Jul 9;14(6):801-817. doi: 10.1093/ecco-jcc/jjz188. PubMed PMID: 31773170; PubMed Central PMCID: PMC7346895.
Wang F, Meng J, Zhang L, Roy S. Opioid use potentiates the virulence of hospital-acquired infection, increases systemic bacterial dissemination and exacerbates gut dysbiosis in a murine model of Citrobacter rodentium infection. Gut Microbes. 2020;11(2):172-190. doi: 10.1080/19490976.2019.1629237. Epub 2019 Aug 5. PubMed PMID: 31379246; PubMed Central PMCID: PMC7053978.
Singh SP, Chand HS, Banerjee S, Agarwal H, Raizada V, Roy S, Sopori M. Acetylcholinesterase Inhibitor Pyridostigmine Bromide Attenuates Gut Pathology and Bacterial Dysbiosis in a Murine Model of Ulcerative Colitis. Dig Dis Sci. 2020 Jan;65(1):141-149. doi: 10.1007/s10620-019-05838-6. Epub 2019 Oct 23. PubMed PMID: 31643033; PubMed Central PMCID: PMC6943409.
Chivero ET, Ahmad R, Thangaraj A, Periyasamy P, Kumar B, Kroeger E, Feng D, Guo ML, Roy S, Dhawan P, Singh AB, Buch S. Cocaine Induces Inflammatory Gut Milieu by Compromising the Mucosal Barrier Integrity and Altering the Gut Microbiota Colonization. Sci Rep. 2019 Aug 21;9(1):12187. doi: 10.1038/s41598-019-48428-2. PubMed PMID: 31434922; PubMed Central PMCID: PMC6704112.
Zhang L, Meng J, Ban Y, Jalodia R, Chupikova I, Fernandez I, Brito N, Sharma U, Abreu MT, Ramakrishnan S, Roy S. Morphine tolerance is attenuated in germfree mice and reversed by probiotics, implicating the role of gut microbiome. Proc Natl Acad Sci U S A. 2019 Jul 2;116(27):13523-13532. doi: 10.1073/pnas.1901182116. Epub 2019 Jun 17. PubMed PMID: 31209039; PubMed Central PMCID: PMC6613141.
Zhang Y, Meng J, Zhang L, Ramkrishnan S, Roy S. Extracellular Vesicles with Exosome-like Features Transfer TLRs between Dendritic Cells. Immunohorizons. 2019 Jun 4;3(6):186-193. doi: 10.4049/immunohorizons.1900016. PubMed PMID: 31356164; PubMed Central PMCID: PMC8011940.
Meason-Smith C, Diesel A, Patterson AP, Older CE, Johnson TJ, Mansell JM, Suchodolski JS, Rodrigues Hoffmann A. Characterization of the cutaneous mycobiota in healthy and allergic cats using next generation sequencing. Vet Dermatol. 2017 Feb;28(1):71-e17. doi: 10.1111/vde.12373. Epub 2016 Aug 23. PubMed PMID: 27553477.
Mishra HK, Johnson TJ, Seelig DM, Walcheck B. Targeting ADAM17 in leukocytes increases neutrophil recruitment and reduces bacterial spread during polymicrobial sepsis. J Leukoc Biol. 2016 Nov;100(5):999-1004. doi: 10.1189/jlb.3VMAB1115-496RR. Epub 2016 Apr 8. PubMed PMID: 27059842; PubMed Central PMCID: PMC5069091.
Clayton JB, Vangay P, Huang H, Ward T, Hillmann BM, Al-Ghalith GA, Travis DA, Long HT, Tuan BV, Minh VV, Cabana F, Nadler T, Toddes B, Murphy T, Glander KE, Johnson TJ, Knights D. Captivity humanizes the primate microbiome. Proc Natl Acad Sci U S A. 2016 Sep 13;113(37):10376-81. doi: 10.1073/pnas.1521835113. Epub 2016 Aug 29. PubMed PMID: 27573830; PubMed Central PMCID: PMC5027417.
Gohl DM, Vangay P, Garbe J, MacLean A, Hauge A, Becker A, Gould TJ, Clayton JB, Johnson TJ, Hunter R, Knights D, Beckman KB. Systematic improvement of amplicon marker gene methods for increased accuracy in microbiome studies. Nat Biotechnol. 2016 Sep;34(9):942-9. doi: 10.1038/nbt.3601. Epub 2016 Jul 25. PubMed PMID: 27454739.
Lang KS, Johnson TJ. Characterization of Acr2, an H-NS-like protein encoded on A/C2-type plasmids. Plasmid. 2016 Sep - Nov;87-88:17-27. doi: 10.1016/j.plasmid.2016.07.004. Epub 2016 Aug 1. PubMed PMID: 27492737.
Mirajkar NS, Johnson TJ, Gebhart CJ. Complete Genome Sequence of Brachyspira hyodysenteriae Type Strain B-78 (ATCC 27164). Genome Announc. 2016 Aug 18;4(4). doi: 10.1128/genomeA.00840-16. PubMed PMID: 27540064; PubMed Central PMCID: PMC4991709.
Johnson TJ, Danzeisen JL, Youmans B, Case K, Llop K, Munoz-Aguayo J, Flores-Figueroa C, Aziz M, Stoesser N, Sokurenko E, Price LB, Johnson JR. Separate F-Type Plasmids Have Shaped the Evolution of the H30 Subclone of Escherichia coli Sequence Type 131. mSphere. 2016 Jul-Aug;1(4). doi: 10.1128/mSphere.00121-16. eCollection 2016 Jul-Aug. PubMed PMID: 27390780; PubMed Central PMCID: PMC4933990.
Johnson TJ, Aziz M, Liu CM, Sokurenko E, Kisiela DI, Paul S, Andersen P, Johnson JR, Price LB. Complete Genome Sequence of a CTX-M-15-Producing Escherichia coli Strain from the H30Rx Subclone of Sequence Type 131 from a Patient with Recurrent Urinary Tract Infections, Closely Related to a Lethal Urosepsis Isolate from the Patient's Sister. Genome Announc. 2016 May 12;4(3). doi: 10.1128/genomeA.00334-16. PubMed PMID: 27174264; PubMed Central PMCID: PMC4866839.
Stoesser N, Sheppard AE, Pankhurst L, De Maio N, Moore CE, Sebra R, Turner P, Anson LW, Kasarskis A, Batty EM, Kos V, Wilson DJ, Phetsouvanh R, Wyllie D, Sokurenko E, Manges AR, Johnson TJ, Price LB, Peto TE, Johnson JR, Didelot X, Walker AS, Crook DW. Evolutionary History of the Global Emergence of the Escherichia coli Epidemic Clone ST131. mBio. 2016 Mar 22;7(2):e02162. doi: 10.1128/mBio.02162-15. PubMed PMID: 27006459; PubMed Central PMCID: PMC4807372.
Hargreaves ML, Shaw KM, Dobbins G, Snippes Vagnone PM, Harper JE, Boxrud D, Lynfield R, Aziz M, Price LB, Silverstein KA, Danzeisen JL, Youmans B, Case K, Sreevatsan S, Johnson TJ. Clonal Dissemination of Enterobacter cloacae Harboring blaKPC-3 in the Upper Midwestern United States. Antimicrob Agents Chemother. 2015 Dec;59(12):7723-34. doi: 10.1128/AAC.01291-15. Epub 2015 Oct 5. PubMed PMID: 26438492; PubMed Central PMCID: PMC4649179.
Danzeisen JL, Clayton JB, Huang H, Knights D, McComb B, Hayer SS, Johnson TJ. Temporal Relationships Exist Between Cecum, Ileum, and Litter Bacterial Microbiomes in a Commercial Turkey Flock, and Subtherapeutic Penicillin Treatment Impacts Ileum Bacterial Community Establishment. Front Vet Sci. 2015;2:56. doi: 10.3389/fvets.2015.00056. eCollection 2015. PubMed PMID: 26664983; PubMed Central PMCID: PMC4672264.
Johnson JR, Porter SB, Thuras P, Johnson TJ, Price LB, Tchesnokova V, Sokurenko EV. Greater ciprofloxacin tolerance as a possible selectable phenotype underlying the pandemic spread of the H30 subclone of Escherichia coli sequence type 131. Antimicrob Agents Chemother. 2015 Nov;59(11):7132-5. doi: 10.1128/AAC.01687-15. Epub 2015 Aug 31. PubMed PMID: 26324269; PubMed Central PMCID: PMC4604381.
LaPara TM, Madson M, Borchardt S, Lang KS, Johnson TJ. Multiple Discharges of Treated Municipal Wastewater Have a Small Effect on the Quantities of Numerous Antibiotic Resistance Determinants in the Upper Mississippi River. Environ Sci Technol. 2015 Oct 6;49(19):11509-15. doi: 10.1021/acs.est.5b02803. Epub 2015 Sep 10. PubMed PMID: 26325533.
Liu C, Zheng H, Yang M, Xu Z, Wang X, Wei L, Tang B, Liu F, Zhang Y, Ding Y, Tang X, Wu B, Johnson TJ, Chen H, Tan C. Genome analysis and in vivo virulence of porcine extraintestinal pathogenic Escherichia coli strain PCN033. BMC Genomics. 2015 Sep 21;16:717. doi: 10.1186/s12864-015-1890-9. PubMed PMID: 26391348; PubMed Central PMCID: PMC4578781.
Lang KS, Johnson TJ. Transcriptome modulations due to A/C2 plasmid acquisition. Plasmid. 2015 Jul;80:83-9. doi: 10.1016/j.plasmid.2015.05.005. Epub 2015 Jun 12. PubMed PMID: 26079188.
Johnson TJ, Singer RS, Isaacson RE, Danzeisen JL, Lang K, Kobluk K, Rivet B, Borewicz K, Frye JG, Englen M, Anderson J, Davies PR. In Vivo Transmission of an IncA/C Plasmid in Escherichia coli Depends on Tetracycline Concentration, and Acquisition of the Plasmid Results in a Variable Cost of Fitness. Appl Environ Microbiol. 2015 May 15;81(10):3561-70. doi: 10.1128/AEM.04193-14. Epub 2015 Mar 13. PubMed PMID: 25769824; PubMed Central PMCID: PMC4407236.
Johnson TJ, Hargreaves M, Shaw K, Snippes P, Lynfield R, Aziz M, Price LB. Complete Genome Sequence of a Carbapenem-Resistant Extraintestinal Pathogenic Escherichia coli Strain Belonging to the Sequence Type 131 H30R Subclade. Genome Announc. 2015 Apr 9;3(2). doi: 10.1128/genomeA.00272-15. PubMed PMID: 25858844; PubMed Central PMCID: PMC4392156.
Kudirkienė E, Bager RJ, Johnson TJ, Bojesen AM. Chaperone-usher fimbriae in a diverse selection of Gallibacterium genomes. BMC Genomics. 2014 Dec 12;15:1093. doi: 10.1186/1471-2164-15-1093. PubMed PMID: 25495603; PubMed Central PMCID: PMC4299563.
Oakley BB, Lillehoj HS, Kogut MH, Kim WK, Maurer JJ, Pedroso A, Lee MD, Collett SR, Johnson TJ, Cox NA. The chicken gastrointestinal microbiome. FEMS Microbiol Lett. 2014 Nov;360(2):100-12. doi: 10.1111/1574-6968.12608. Epub 2014 Oct 13. Review. PubMed PMID: 25263745.
Kim HB, Singer RS, Borewicz K, White BA, Sreevatsan S, Johnson TJ, Espejo LA, Isaacson RE. Effects of tylosin administration on C-reactive protein concentration and carriage of Salmonella enterica in pigs. Am J Vet Res. 2014 May;75(5):460-7. doi: 10.2460/ajvr.75.5.460. PubMed PMID: 24762018.
Danzeisen JL, Calvert AJ, Noll SL, McComb B, Sherwood JS, Logue CM, Johnson TJ. Succession of the turkey gastrointestinal bacterial microbiome related to weight gain. PeerJ. 2013 Dec 23;1:e237. doi: 10.7717/peerj.237. eCollection 2013 Dec 23. PubMed PMID: 24432198; PubMed Central PMCID: PMC3883494.
Foley SL, Johnson TJ, Ricke SC, Nayak R, Danzeisen J. Salmonella pathogenicity and host adaptation in chicken-associated serovars. Microbiol Mol Biol Rev. 2013 Dec;77(4):582-607. doi: 10.1128/MMBR.00015-13. Review. PubMed PMID: 24296573; PubMed Central PMCID: PMC3973385.
Johnson TJ, Abrahante JE, Hunter SS, Hauglund M, Tatum FM, Maheswaran SK, Briggs RE. Comparative genome analysis of an avirulent and two virulent strains of avian Pasteurella multocida reveals candidate genes involved in fitness and pathogenicity. BMC Microbiol. 2013 May 14;13:106. doi: 10.1186/1471-2180-13-106. PubMed PMID: 23672515; PubMed Central PMCID: PMC3660278.
Danzeisen JL, Wannemuehler Y, Nolan LK, Johnson TJ. Comparison of multilocus sequence analysis and virulence genotyping of Escherichia coli from live birds, retail poultry meat, and human extraintestinal infection. Avian Dis. 2013 Mar;57(1):104-8. doi: 10.1637/10218-042812-ResNote.1. PubMed PMID: 23678737.
Abrahante JE, Johnson TJ, Hunter SS, Maheswaran SK, Hauglund MJ, Bayles DO, Tatum FM, Briggs RE. Draft Genome Sequences of Two Virulent Serotypes of Avian Pasteurella multocida. Genome Announc. 2013 Jan;1(1). doi: 10.1128/genomeA.00058-12. Epub 2013 Jan 31. PubMed PMID: 23405337; PubMed Central PMCID: PMC3569333.
Johnson TJ, Danzeisen JL, Trampel D, Nolan LK, Seemann T, Bager RJ, Bojesen AM. Genome analysis and phylogenetic relatedness of Gallibacterium anatis strains from poultry. PLoS One. 2013;8(1):e54844. doi: 10.1371/journal.pone.0054844. Epub 2013 Jan 24. PubMed PMID: 23359626; PubMed Central PMCID: PMC3554606.
Sandford EE, Orr M, Li X, Zhou H, Johnson TJ, Kariyawasam S, Liu P, Nolan LK, Lamont SJ. Strong concordance between transcriptomic patterns of spleen and peripheral blood leukocytes in response to avian pathogenic Escherichia coli infection. Avian Dis. 2012 Dec;56(4):732-6. doi: 10.1637/10261-060512-Reg.1. PubMed PMID: 23397846.
Gnanandarajah JS, Johnson TJ, Kim HB, Abrahante JE, Lulich JP, Murtaugh MP. Comparative faecal microbiota of dogs with and without calcium oxalate stones. J Appl Microbiol. 2012 Oct;113(4):745-56. doi: 10.1111/j.1365-2672.2012.05390.x. Epub 2012 Aug 2. PubMed PMID: 22788835.
Logue CM, Doetkott C, Mangiamele P, Wannemuehler YM, Johnson TJ, Tivendale KA, Li G, Sherwood JS, Nolan LK. Genotypic and phenotypic traits that distinguish neonatal meningitis-associated Escherichia coli from fecal E. coli isolates of healthy human hosts. Appl Environ Microbiol. 2012 Aug;78(16):5824-30. doi: 10.1128/AEM.07869-11. Epub 2012 Jun 15. PubMed PMID: 22706051; PubMed Central PMCID: PMC3406136.
Johnson TJ, Bielak EM, Fortini D, Hansen LH, Hasman H, Debroy C, Nolan LK, Carattoli A. Expansion of the IncX plasmid family for improved identification and typing of novel plasmids in drug-resistant Enterobacteriaceae. Plasmid. 2012 Jul;68(1):43-50. doi: 10.1016/j.plasmid.2012.03.001. Epub 2012 Mar 26. PubMed PMID: 22470007.
Dutta R, Roy S. Mechanism(s) involved in opioid drug abuse modulation of HAND. Curr HIV Res. 2012 Jul;10(5):469-77. doi: 10.2174/157016212802138805. Review. PubMed PMID: 22591371; PubMed Central PMCID: PMC3565579.
Johnson TJ, Wannemuehler Y, Kariyawasam S, Johnson JR, Logue CM, Nolan LK. Prevalence of avian-pathogenic Escherichia coli strain O1 genomic islands among extraintestinal and commensal E. coli isolates. J Bacteriol. 2012 Jun;194(11):2846-53. doi: 10.1128/JB.06375-11. Epub 2012 Mar 30. PubMed PMID: 22467781; PubMed Central PMCID: PMC3370642.
Lang KS, Danzeisen JL, Xu W, Johnson TJ. Transcriptome mapping of pAR060302, a blaCMY-2-positive broad-host-range IncA/C plasmid. Appl Environ Microbiol. 2012 May;78(9):3379-86. doi: 10.1128/AEM.07199-11. Epub 2012 Feb 17. PubMed PMID: 22344651; PubMed Central PMCID: PMC3346456.
Lynne AM, Kariyawasam S, Wannemuehler Y, Johnson TJ, Johnson SJ, Sinha AS, Lynne DK, Moon HW, Jordan DM, Logue CM, Foley SL, Nolan LK. Recombinant Iss as a potential vaccine for avian colibacillosis. Avian Dis. 2012 Mar;56(1):192-9. doi: 10.1637/9861-072111-Reg.1. PubMed PMID: 22545546.
Sandford EE, Orr M, Shelby M, Li X, Zhou H, Johnson TJ, Kariyawasam S, Liu P, Nolan LK, Lamont SJ. Leukocyte transcriptome from chickens infected with avian pathogenic Escherichia coli identifies pathways associated with resistance. Results Immunol. 2012;2:44-53. doi: 10.1016/j.rinim.2012.02.003. eCollection 2012. PubMed PMID: 24371566; PubMed Central PMCID: PMC3862389.
Shepard SM, Danzeisen JL, Isaacson RE, Seemann T, Achtman M, Johnson TJ. Genome sequences and phylogenetic analysis of K88- and F18-positive porcine enterotoxigenic Escherichia coli. J Bacteriol. 2012 Jan;194(2):395-405. doi: 10.1128/JB.06225-11. Epub 2011 Nov 11. PubMed PMID: 22081385; PubMed Central PMCID: PMC3256668.
Johnson TJ, Logue CM, Johnson JR, Kuskowski MA, Sherwood JS, Barnes HJ, DebRoy C, Wannemuehler YM, Obata-Yasuoka M, Spanjaard L, Nolan LK. Associations between multidrug resistance, plasmid content, and virulence potential among extraintestinal pathogenic and commensal Escherichia coli from humans and poultry. Foodborne Pathog Dis. 2012 Jan;9(1):37-46. doi: 10.1089/fpd.2011.0961. Epub 2011 Oct 11. PubMed PMID: 21988401; PubMed Central PMCID: PMC3250628.
Johnson TJ, Lang KS. IncA/C plasmids: An emerging threat to human and animal health?. Mob Genet Elements. 2012 Jan 1;2(1):55-58. doi: 10.4161/mge.19626. PubMed PMID: 22754754; PubMed Central PMCID: PMC3383451.
Danzeisen JL, Kim HB, Isaacson RE, Tu ZJ, Johnson TJ. Modulations of the chicken cecal microbiome and metagenome in response to anticoccidial and growth promoter treatment. PLoS One. 2011;6(11):e27949. doi: 10.1371/journal.pone.0027949. Epub 2011 Nov 16. PubMed PMID: 22114729; PubMed Central PMCID: PMC3218064.
Sandford EE, Orr M, Balfanz E, Bowerman N, Li X, Zhou H, Johnson TJ, Kariyawasam S, Liu P, Nolan LK, Lamont SJ. Spleen transcriptome response to infection with avian pathogenic Escherichia coli in broiler chickens. BMC Genomics. 2011 Sep 27;12:469. doi: 10.1186/1471-2164-12-469. PubMed PMID: 21951686; PubMed Central PMCID: PMC3190404.
Johnson TJ, Shepard SM, Rivet B, Danzeisen JL, Carattoli A. Comparative genomics and phylogeny of the IncI1 plasmids: a common plasmid type among porcine enterotoxigenic Escherichia coli. Plasmid. 2011 Sep;66(3):144-51. doi: 10.1016/j.plasmid.2011.07.003. Epub 2011 Aug 6. PubMed PMID: 21843549.
Fernández-Alarcón C, Singer RS, Johnson TJ. Comparative genomics of multidrug resistance-encoding IncA/C plasmids from commensal and pathogenic Escherichia coli from multiple animal sources. PLoS One. 2011;6(8):e23415. doi: 10.1371/journal.pone.0023415. Epub 2011 Aug 12. PubMed PMID: 21858108; PubMed Central PMCID: PMC3155540.
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