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Bryda EC, Johnson NT, Ohlemiller KK, Besch-Williford CL, Moore E, Bram RJ. Conditional deletion of calcium-modulating cyclophilin ligand causes deafness in mice. Mamm Genome. 2012 Apr;23(3-4):270-6. doi: 10.1007/s00335-011-9381-z. Epub 2011 Dec 15. PubMed PMID: 22170629.
Almamun M, Levinson BT, van Swaay AC, Johnson NT, McKay SD, Arthur GL, Davis JW, Taylor KH. Integrated methylome and transcriptome analysis reveals novel regulatory elements in pediatric acute lymphoblastic leukemia. Epigenetics. 2015;10(9):882-90. doi: 10.1080/15592294.2015.1078050. PubMed PMID: 26308964; PubMed Central PMCID: PMC4622668.
Cui H, Dhroso A, Johnson N, Korkin D. The variation game: Cracking complex genetic disorders with NGS and omics data. Methods. 2015 Jun;79-80:18-31. doi: 10.1016/j.ymeth.2015.04.018. Epub 2015 May 2. Review. PubMed PMID: 25944472.
Johnson NT, Dhroso A, Hughes KJ, Korkin D. Biological classification with RNA-Seq data: Can alternative splicing enhance machine learning classifier?. bioRxiv. 2017 January;
Almamun M, Kholod O, Stuckel AJ, Levinson BT, Johnson NT, Arthur GL, Davis JW, Taylor KH. Inferring a role for methylation of intergenic DNA in the regulation of genes aberrantly expressed in precursor B-cell acute lymphoblastic leukemia. Leuk Lymphoma. 2017 Sep;58(9):1-12. doi: 10.1080/10428194.2016.1272683. Epub 2017 Jan 17. PubMed PMID: 28094574; PubMed Central PMCID: PMC5478429.
Oleksandr N, Johnson NT, Korkin D. Determining rewiring effects of alternatively spliced isoforms on protein-protein interactions using a computational approach. bioRxiv. 2018 January;
Gardner M, Dhroso A, Johnson N, Davis EL, Baum TJ, Korkin D, Mitchum MG. Novel global effector mining from the transcriptome of early life stages of the soybean cyst nematode Heterodera glycines. Sci Rep. 2018 Feb 6;8(1):2505. doi: 10.1038/s41598-018-20536-5. PubMed PMID: 29410430; PubMed Central PMCID: PMC5802810.
Johnson NT, Dhroso A, Hughes KJ, Korkin D. Biological classification with RNA-seq data: Can alternatively spliced transcript expression enhance machine learning classifiers?. RNA. 2018 Sep;24(9):1119-1132. doi: 10.1261/rna.062802.117. Epub 2018 Jun 25. PubMed PMID: 29941426; PubMed Central PMCID: PMC6097660.
Srinivasan S, Johnson NT, Korkin D. A Hybrid Deep Clustering Approach for Robust Cell Type Profiling Using Single-cell RNA-seq Data. bioRxiv. 2019 January;
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