My Bibliography

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Rostomily C, Bhalla A, Hampton H, Pflieger L, Brunkow ME, Cooper D, Lausted C, Akhade AS, Smith B, Scherler K, Troisch P, Wang K, Wormser GP, Rappaport N, Hood L, Subramanian N. Multiomics reveals compartmentalized immune responses and tissue-vascular signatures in Lyme disease. bioRxiv. 2025 May. doi: https://doi.org/10.1101/2025.05.27.656061.

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Spector L, Subramanian N. Revealing the dance of NLRP3: spatiotemporal patterns in inflammasome activation. Immunometabolism (Cobham). 2025 Jan;7(1):e00053. doi: 10.1097/IN9.0000000000000053. eCollection 2025 Jan. Review. PubMed PMID: 39816134; PubMed Central PMCID: PMC11731036.

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Akhade AS, Subramanian N. Cytoplasmic Sensing in Innate Immunity. In: Bradshaw RA, Stahl PD, Hart GW, editors. Encyclopedia of Cell Biology [Internet] 2 ed. USA: Academic Press; 2023. 624–643p. Available from: https://doi.org/10.1016/B978-0-12-821618-7.00012-2.

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Duvvuri VR, Baumgartner A, Molani S, Hernandez PV, Yuan D, Roper RT, Matos WF, Robinson M, Su Y, Subramanian N, Goldman JD, Heath JR, Hadlock JJ. Angiotensin-Converting Enzyme (ACE) Inhibitors May Moderate COVID-19 Hyperinflammatory Response: An Observational Study with Deep Immunophenotyping. Health Data Sci. 2022;2022. doi: 10.34133/hds.0002. Epub 2022 Dec 27. PubMed PMID: 36817759; PubMed Central PMCID: PMC9934012.

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Kuchina A, Yang J, Aldridge B, Janes KA, Subramanian N, Krogan NJ, Bouhaddou M, Einav S, Papin J, Germain RN. How can systems approaches help us understand and treat infectious disease?. Cell Syst. 2022 Dec 21;13(12):945-949. doi: 10.1016/j.cels.2022.11.009. PubMed PMID: 36549272.

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Su Y, Yuan D, Chen DG, Ng RH, Wang K, Choi J, Li S, Hong S, Zhang R, Xie J, Kornilov SA, Scherler K, Pavlovitch-Bedzyk AJ, Dong S, Lausted C, Lee I, Fallen S, Dai CL, Baloni P, Smith B, Duvvuri VR, Anderson KG, Li J, Yang F, Duncombe CJ, McCulloch DJ, Rostomily C, Troisch P, Zhou J, Mackay S, DeGottardi Q, May DH, Taniguchi R, Gittelman RM, Klinger M, Snyder TM, Roper R, Wojciechowska G, Murray K, Edmark R, Evans S, Jones L, Zhou Y, Rowen L, Liu R, Chour W, Algren HA, Berrington WR, Wallick JA, Cochran RA, Micikas ME, Wrin T, Petropoulos CJ, Cole HR, Fischer TD, Wei W, Hoon DSB, Price ND, Subramanian N, Hill JA, Hadlock J, Magis AT, Ribas A, Lanier LL, Boyd SD, Bluestone JA, Chu H, Hood L, Gottardo R, Greenberg PD, Davis MM, Goldman JD, Heath JR. Multiple early factors anticipate post-acute COVID-19 sequelae. Cell. 2022 Mar 3;185(5):881-895.e20. doi: 10.1016/j.cell.2022.01.014. Epub 2022 Jan 25. PubMed PMID: 35216672; PubMed Central PMCID: PMC8786632.

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Rommereim L, Akhade AS, Germain RN, Fraser IDC, Subramanian N. Lentivirus-mediated Conditional Gene Expression. Bio Protoc. 2021 Nov 5;11(21):e4205. doi: 10.21769/BioProtoc.4205. eCollection 2021 Nov 5. PubMed PMID: 34859120; PubMed Central PMCID: PMC8595424.

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Rommereim LM, Akhade AS, Dutta B, Hutcheon C, Lounsbury NW, Rostomily CC, Savan R, Fraser IDC, Germain RN, Subramanian N. A small sustained increase in NOD1 abundance promotes ligand-independent inflammatory and oncogene transcriptional responses. Sci Signal. 2020 Dec 8;13(661). doi: 10.1126/scisignal.aba3244. PubMed PMID: 33293463; PubMed Central PMCID: PMC7853416.

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Akhade AS, Atif SM, Lakshmi BS, Dikshit N, Hughes KT, Qadri A, Subramanian N. Type 1 interferon-dependent repression of NLRC4 and iPLA2 licenses down-regulation of Salmonella flagellin inside macrophages. Proc Natl Acad Sci U S A. 2020 Nov 24;117(47):29811-29822. doi: 10.1073/pnas.2002747117. Epub 2020 Nov 11. PubMed PMID: 33177235; PubMed Central PMCID: PMC7703570.

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Su Y, Chen D, Yuan D, Lausted C, Choi J, Dai CL, Voillet V, Duvvuri VR, Scherler K, Troisch P, Baloni P, Qin G, Smith B, Kornilov SA, Rostomily C, Xu A, Li J, Dong S, Rothchild A, Zhou J, Murray K, Edmark R, Hong S, Heath JE, Earls J, Zhang R, Xie J, Li S, Roper R, Jones L, Zhou Y, Rowen L, Liu R, Mackay S, O'Mahony DS, Dale CR, Wallick JA, Algren HA, Zager MA, Wei W, Price ND, Huang S, Subramanian N, Wang K, Magis AT, Hadlock JJ, Hood L, Aderem A, Bluestone JA, Lanier LL, Greenberg PD, Gottardo R, Davis MM, Goldman JD, Heath JR. Multi-Omics Resolves a Sharp Disease-State Shift between Mild and Moderate COVID-19. Cell. 2020 Dec 10;183(6):1479-1495.e20. doi: 10.1016/j.cell.2020.10.037. Epub 2020 Oct 28. PubMed PMID: 33171100; PubMed Central PMCID: PMC7598382.

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Idso MN, Akhade AS, Arrieta-Ortiz ML, Lai BT, Srinivas V, Hopkins JP Jr, Gomes AO, Subramanian N, Baliga N, Heath JR. Antibody-recruiting protein-catalyzed capture agents to combat antibiotic-resistant bacteria. Chem Sci. 2020 Feb 12;11(11):3054-3067. doi: 10.1039/c9sc04842a. PubMed PMID: 34122810; PubMed Central PMCID: PMC8157486.

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Hutcheon C, Paulvannan P, Subramanian N. Cytoplasmic sensing in innate immunity. In: Bradshaw RA, Stahl PD, editors. Encyclopedia of Cell Biology 1st ed. United States of America: Elsevier; 2016. p.710-726. 3008p.

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Hampton H, Hutcheon C, Subramanian N. NAGging Hexokinase PEPs up NLRP3. Cell Host Microbe. 2016 Aug 10;20(2):130-2. doi: 10.1016/j.chom.2016.07.017. PubMed PMID: 27512900.

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Rommereim LM, Subramanian N. AIMing 2 Curtail Cancer. Cell. 2015 Jul 2;162(1):18-20. doi: 10.1016/j.cell.2015.06.041. PubMed PMID: 26140588.

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Subramanian N, Torabi-Parizi P, Gottschalk RA, Germain RN, Dutta B. Network representations of immune system complexity. Wiley Interdiscip Rev Syst Biol Med. 2015 Jan-Feb;7(1):13-38. doi: 10.1002/wsbm.1288. Epub 2015 Jan 27. Review. PubMed PMID: 25625853; PubMed Central PMCID: PMC4339634.

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Subramanian N, Natarajan K, Clatworthy MR, Wang Z, Germain RN. The adaptor MAVS promotes NLRP3 mitochondrial localization and inflammasome activation. Cell. 2013 Apr 11;153(2):348-61. doi: 10.1016/j.cell.2013.02.054. PubMed PMID: 23582325; PubMed Central PMCID: PMC3632354.

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Lee GS, Subramanian N, Kim AI, Aksentijevich I, Goldbach-Mansky R, Sacks DB, Germain RN, Kastner DL, Chae JJ. The calcium-sensing receptor regulates the NLRP3 inflammasome through Ca2+ and cAMP. Nature. 2012 Dec 6;492(7427):123-7. doi: 10.1038/nature11588. Epub 2012 Nov 11. PubMed PMID: 23143333; PubMed Central PMCID: PMC4175565.

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Kastenmüller W, Torabi-Parizi P, Subramanian N, Lämmermann T, Germain RN. A spatially-organized multicellular innate immune response in lymph nodes limits systemic pathogen spread. Cell. 2012 Sep 14;150(6):1235-48. doi: 10.1016/j.cell.2012.07.021. PubMed PMID: 22980983; PubMed Central PMCID: PMC3514884.

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Ombrello MJ, Remmers EF, Sun G, Freeman AF, Datta S, Torabi-Parizi P, Subramanian N, Bunney TD, Baxendale RW, Martins MS, Romberg N, Komarow H, Aksentijevich I, Kim HS, Ho J, Cruse G, Jung MY, Gilfillan AM, Metcalfe DD, Nelson C, O'Brien M, Wisch L, Stone K, Douek DC, Gandhi C, Wanderer AA, Lee H, Nelson SF, Shianna KV, Cirulli ET, Goldstein DB, Long EO, Moir S, Meffre E, Holland SM, Kastner DL, Katan M, Hoffman HM, Milner JD. Cold urticaria, immunodeficiency, and autoimmunity related to PLCG2 deletions. N Engl J Med. 2012 Jan 26;366(4):330-8. doi: 10.1056/NEJMoa1102140. Epub 2012 Jan 11. PubMed PMID: 22236196; PubMed Central PMCID: PMC3298368.

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Kastenmuller W, Gasteiger G, Subramanian N, Sparwasser T, Busch DH, Belkaid Y, Drexler I, Germain RN. Regulatory T cells selectively control CD8+ T cell effector pool size via IL-2 restriction. J Immunol. 2011 Sep 15;187(6):3186-97. doi: 10.4049/jimmunol.1101649. Epub 2011 Aug 17. PubMed PMID: 21849683; PubMed Central PMCID: PMC3169715.

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Subramanian N, Qadri A. Lysophospholipid sensing triggers secretion of flagellin from pathogenic salmonella. Nat Immunol. 2006 Jun;7(6):583-9. doi: 10.1038/ni1336. Epub 2006 Apr 30. PubMed PMID: 16648855.

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Antibody-recruiting protein-catalyzed capture agents to combat antibiotic-resistant bacteria. Chemical science. . NIHMSID: NIHMS1707445.doi: 10.1039/c9sc04842a.