My Bibliography

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Deritei D, Anamika WJ, Zhou AX, Yun JH, Sauler M, Cho MH, Silverman EK, Ravasz Regan E, Glass K. HHIP's dynamic role in epithelial wound healing reveals a potential mechanism of COPD susceptibility. Proc Natl Acad Sci U S A. 2026 Jun 2;123(22):e2424377123. doi: 10.1073/pnas.2424377123. Epub 2026 May 26. PubMed PMID: 42190016; PubMed Central PMCID: PMC13225619.

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Zhang J, Moll M, Debban CL, Hobbs BD, Rijhwani H, Washko GR, Celli BR, Silverman EK, Bakke P, Oelsner EC, Barr RG, Agustí A, Faner R, Bruselle GG, Humphries SM, Lynch DA, Dupuis J, Manichaikul AW, O'Connor GT, Cho MH. Body Mass Index-related genetic factors and COPD imaging phenotypes. Ann Am Thorac Soc. 2026 May 1;23(5):720-727. doi: 10.1093/annalsats/aaoag007. PubMed PMID: 41721747; PubMed Central PMCID: PMC13152661.

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Kim JS, Debban CL, Manichaikul A. Reply to Wang et al.: Causal inference considerations in proteomic biomarker studies for interstitial lung disease. Am J Respir Crit Care Med. 2026 May 1;212(5):1058-1059. doi: 10.1093/ajrccm/aamag029. PubMed PMID: 41738193.

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Waliullah ASM, Nguyen TA, Dziegielewska B, Zhang J, Qiu K, Tran ML, Nguyen NN, Wang L, Pan A, Nong M, Segovia N, Li Y, Zhang Y, Ummarino S, Nguyen TM, Manichaikul A, Ghosh P, Mohi G, Goldfarb AN, Craig JW, Tenen DG, Trinh BQ. The C/EBPα-(PU.1-LOUP) regulatory circuit regulates monocyte/macrophage development and immune functions. Blood. 2026 Apr 23;147(17):1970-1983. doi: 10.1182/blood.2025030667. PubMed PMID: 41592329; PubMed Central PMCID: PMC13155968.

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Hu X, Araujo DS, Khunsriraksakul C, Wang L, Sun Q, Wen J, Zhou L, Ekunwe L, Lange LA, Lange EM, Montgomery SB, Reiner AP, Aguet F, Ardlie KG, Lappalainen T, Gignoux CR, Burchard EG, Taylor KD, Guo X, Rotter JI, Rich SS, Cornell E, Durda P, Tracy RP, Liu Y, Johnson WC, Papanicolaou GP, Perera MA, Cho MH, Liu DJ, Raffield LM, Li Y, TOPMed Multi-Omics Working Group, Wheeler HE, Im HK, Manichaikul A. Multi-ancestry transcriptome prediction with functionally informed variants in TOPMed MESA improves performance of transcriptome-wide association studies. Am J Hum Genet. 2026 Apr 2;113(4):828-841. doi: 10.1016/j.ajhg.2026.03.008. PubMed PMID: 41932314; PubMed Central PMCID: PMC13078710.

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Patchen BK, Zhang J, Gaddis N, Bartz TM, Chen J, Debban C, Leonard H, Nguyen NQH, Seo J, Tern C, Allen R, DeMeo DL, Fornage M, Melbourne C, Minto M, Moll M, O'Connor GT, Pottinger T, Psaty BM, Rich SS, Rotter JI, Silverman EK, Stratford J, Zhang C, Barr RG, Cho MH, Gharib SA, Manichaikul A, North K, Oelsner EC, Simonsick EM, Tobin MD, Yu B, Choi SH, Dupuis J, Cassano PA, Hancock DB. Multi-ancestry genome-wide association study and meta-analysis of lung function decline. Respir Res. 2026 Feb 28;27(1). doi: 10.1186/s12931-026-03565-x. PubMed PMID: 41764487; PubMed Central PMCID: PMC12961773.

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Zhang C, Konigsberg IR, He Y, Zhang J, Chikowore T, Feldman WB, Hu X, Ding Y, Pasaniuc B, Chang D, Chen Q, Lasky-Su JA, Hecker J, Tobin MD, Chen J, Kalra S, Pratte KA, Im HK, Wan ES, Manichaikul A, Silverman EK, Bowler RP, Lange LA, Ortega VE, Martin AR, Cho MH, Moll MR. Multi-trait polygenic scores for COPD and COPD exacerbations implicate druggable proteins. JCI Insight. 2026 Apr 8;11(7). doi: 10.1172/jci.insight.199951. eCollection 2026 Apr 8. PubMed PMID: 41712304; PubMed Central PMCID: PMC13134720.

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Nicholas JC, Katz DH, Tahir UA, Debban CL, Aguet F, Blackwell T, Bowler RP, Broadaway KA, Chen J, Clish CB, Coresh J, Cornell E, Cruz DE, Deo R, Doyle MF, Durda P, Ekunwe L, Floyd JS, Gill D, Guo X, Hoogeveen RC, Johnson C, Lange LA, Li Y, Manning A, Meigs JB, Mi MY, Mychaleckyj JC, Olson NC, Pratte KA, Psaty BM, Reiner AP, Ruan P, Sevilla-Gonzalez M, Shah AM, Sun Q, Tracy RP, Wen J, Wood AC, Wilson JG, Young KL, Yu B, Rooney MR, Manichaikul A, Dubin R, Mohlke KL, Rich SS, Rotter JI, Ganz P, Gerszten RE, Taylor KD, Raffield LM. Cross-ancestry comparison of aptamer and antibody protein measures. Nat Commun. 2026 Jan 22;17(1):1054. doi: 10.1038/s41467-025-67814-1. PubMed PMID: 41571639; PubMed Central PMCID: PMC12847899.

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He Y, Lu W, Jee YH, Shih MY, Wang Y, Tsuo K, Qian DC, Diao JA, Huang H, Patel CJ, Byun J, Pasaniuc B, Atkinson EG, Amos CI, Feng YA, Moll M, Cho MH, Martin AR. Multi-trait and multi-ancestry genetic analysis of comorbid lung diseases and traits improves genetic discovery and polygenic risk prediction. Nat Genet. 2026 Feb;58(2):289-298. doi: 10.1038/s41588-025-02470-1. Epub 2026 Jan 21. PubMed PMID: 41565855; PubMed Central PMCID: PMC13284852.

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Kim W, Hu X, Kim K, Chun S, Orchard P, Qiao D, Ruczinski I, Saferali A, Aguet F, Antonacci-Fulton L, Balte PP, Bartz TM, Anamika WJ, Zhou X, Duan J, Brody JA, Cade BE, Daviglus ML, Doddapaneni H, Dugan-Perez S, Dutcher SK, Frazar CD, Gabriel SB, Gharib SA, Gupta N, Hobbs BD, Kasela S, Loehr LR, Metcalf GA, Muzny DM, Oelsner EC, Rasmussen-Torvik LJ, Sitlani CM, Smith J, Sofer T, Xu H, Yu B, Zhang D, Ziniti J, Barr RG, Carson AP, Fornage M, Hou L, Kalhan R, Kaplan R, Lappalainen T, London SJ, Morrison AC, O'Connor GT, Psaty BM, Raffield LM, Redline S, Rich SS, Rotter JI, Silverman EK, Manichaikul A, Cho MH. Whole genome sequence analysis of pulmonary function and COPD in 44,287 multi-ancestry participants. Genome Biol. 2026 Jan 15;27(1):28. doi: 10.1186/s13059-025-03921-y. PubMed PMID: 41535900; PubMed Central PMCID: PMC12888468.

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Murray CS, Yang C, Chen SN, Graw S, Karimpour-Fard A, Cleveland J, Gao S, Im HK, Wheeler HE, Ambardekar AV, Hoffman JRH, Gabriel S, Gupta N, Ardlie K, Rotter JI, Taylor KD, Rich SS, Mestroni L, Manichaikul A, Taylor MRG. Integration of dilated cardiomyopathy genomics with transcriptomics from the human heart implicates regulatory molecular mechanisms. medRxiv. 2026 Jan 13;. doi: 10.64898/2026.01.12.26343934. PubMed PMID: 41646816; PubMed Central PMCID: PMC12870565.

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Van Buren E, Zhang Y, Li X, Selvaraj MS, Li Z, Zhou H, Palmer ND, Arnett DK, Blangero J, Boerwinkle E, Cade BE, Carlson JC, Carson AP, Chen YI, Curran J, Duggirala R, Fornage M, Franceschini N, Graff M, Gu C, Guo X, He J, Heard-Cosa N, Hou L, Hung YJ, Kalyani RR, Kardia SLR, Kenny E, Kooperberg C, Kral BG, Lange L, Levy D, Li C, Liu S, Lloyd-Jones D, Loos RJF, Manichaikul AW, Martin LW, Mathias R, Minster RL, Mitchell BD, Mychaleckyj JC, Naseri T, North K, O'Connell J, Perry JA, Peyser PA, Psaty BM, Raffield LM, Vasan RS, Redline S, Reiner AP, Rich SS, Smith JA, Spitzer B, Tang H, Taylor KD, Tracy R, Viali S, Yanek L, Zhao W, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Rotter JI, Peloso GM, Natarajan P, Lin X. cellSTAAR: incorporating single-cell-sequencing-based functional data to boost power in rare variant association testing of noncoding regions. Nat Methods. 2026 Feb;23(2):338-349. doi: 10.1038/s41592-025-02919-5. Epub 2025 Dec 31. PubMed PMID: 41476111; PubMed Central PMCID: PMC13284854.

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Zhong H, Zhu J, Liu S, Wu C, Wang L, Whelton SP, Marshall CH, Blaha MJ, Durda P, Guo X, Johnson CW, Lin HJ, Taylor KD, Tracy RP, Yarden RI, Manichaikul AW, Rich SS, Rotter JI, Deo R, Dubin RF, Ganz P, Wu L. Proteome-wide association study of prostate cancer risk across populations. Nat Commun. 2025 Dec 6;17(1). doi: 10.1038/s41467-025-66250-5. PubMed PMID: 41353205; PubMed Central PMCID: PMC13039972.

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Wang L, Gao S, Chen S, Markus H, Wang G, Carrel L, Zhan X, Liu DJ, Jiang B. Integrating axis quantitative trait loci looks beyond cell types and offers insights into brain-related traits. Nat Commun. 2025 Nov 26;16(1):10606. doi: 10.1038/s41467-025-65643-w. PubMed PMID: 41298438; PubMed Central PMCID: PMC12658083.

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Goldman-Pham R, Alter MP, Bao R, Collins SÉ, Debban CL, Allinson JP, Ambler A, Bertoni AG, Caspi A, Lovinsky-Desir S, Ekstrom MP, Engert JC, Jacobs DR Jr, Malinsky D, Manichaikul A, Michos ED, Moffitt TE, Oelsner EC, Ramrakha S, Rich SS, Sack C, Stanojevic S, Subbarao P, Sugden K, Theodore R, Watson KE, Williams B, Yang B, Dupuis J, Shaheen SO, Barr RG, Hancox RJ, Smith BM. Quantifying the impact of early life growth adversity on later life health. Commun Med (Lond). 2025 Nov 17;5(1):534. doi: 10.1038/s43856-025-01245-3. PubMed PMID: 41258496; PubMed Central PMCID: PMC12749450.

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Kim JS, Pugashetti J, Ma SF, Huang Y, Podolanczuk AJ, Lynch DA, Oh A, Mychaleckyj J, Manichaikul A, Rich S, Chua F, Adams TM, Flaherty KR, Lee JS, Lasky JA, Raghu G, Murray S, Spino C, Martinez FJ, Noth I, Humphries SM, Adegunsoye A, Molyneaux PL, Oldham JM, Newton CA. Associations of interstitial lung disease subtype and CT pattern with lung function and survival. Thorax. 2025 Nov 14;80(12):927-934. doi: 10.1136/thorax-2024-222149. PubMed PMID: 40484639; PubMed Central PMCID: PMC12354206.

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Cutting CC, Rose JA, Tukpah AC, Wada N, Nishino M, Kalra S, Moll MR, Cho MH, Silverman EK, Kinney GL, Rossiter HB, Bjarnadottir H, Gudmundsdottir V, Sigurdsson S, Gudmundsson G, Gudnason V, Washko GR, Budoff MJ, Hatabu H, Hunninghake GM, Putman RK. Interstitial lung abnormalities, coronary heart disease and mortality. Eur Respir J. 2025 Nov;66(5). doi: 10.1183/13993003.02286-2024. Print 2025 Nov. PubMed PMID: 40610050; PubMed Central PMCID: PMC12747677.

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Pottinger T, Liu Z, Liu L, Buschur KL, Curtis JL, Manichaikul A, Rich SS, Ortega VE, Bleecker ER, Meyers DA, Hoffman EA, Smith B, Novak J, Kiryluk K, Barr RG. Serum IgA isotypes are associated with percent emphysema, wall thickness and lung function decline. Thorax. 2025 Oct 15;80(11):829-837. doi: 10.1136/thorax-2025-222990. PubMed PMID: 40846486; PubMed Central PMCID: PMC12530317.

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Cruz DE, Deng S, Tahir UA, Chen ZZ, Benson MD, Tuftin B, Chen J, Farrell L, Shen D, Meyer M, Lange E, Gao Y, Hall ME, Tracy RP, Rich SS, Taylor K, Manichaikul A, Rotter JI, Sofer T, Wilson JG, Gerszten RE, Raffield LM, National Heart . Admixture-mapping analysis reveals genetic determinants of the human plasma proteome. HGG Adv. 2026 Jan 15;7(1):100529. doi: 10.1016/j.xhgg.2025.100529. Epub 2025 Oct 8. PubMed PMID: 41069105; PubMed Central PMCID: PMC12657719.

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Guo B, Cai Y, Kim D, Smit RAJ, Wang Z, Iyer KR, Hilliard AT, Haessler J, Tao R, Broadaway KA, Wang Y, Pozdeyev N, Stæger FF, Yang C, Vanderwerff B, Patki AD, Stalbow L, Lin M, Rafaels N, Shortt J, Wiley L, Stanislawski M, Pattee J, Davis L, Straub PS, Shuey MM, Cox NJ, Lee NR, Jørgensen ME, Bjerregaard P, Larsen C, Hansen T, Moltke I, Meigs JB, Stram DO, Yin X, Zhou X, Chang KM, Clarke SL, Guarischi-Sousa R, Lankester J, Tsao PS, Buyske S, Graff M, Raffield LM, Sun Q, Wilkens LR, Carlson CS, Easton CB, Liu S, Manson JE, Marchand LL, Haiman CA, Mohlke KL, Gordon-Larsen P, Albrechtsen A, Boehnke M, Rich SS, Manichaikul A, Rotter JI, Yousri NA, Irvin RM, biobank at the Colorado Center for Personalized Medicine (CCPM), VA Million Veteran Program (MVP), Gignoux C, North KE, Loos RJF, Assimes TL, Peters U, Kooperberg C, Raghavan S, Highland HM, Darst BF. Polygenic risk score for type 2 diabetes shows context-dependent effects across populations. Nat Commun. 2025 Oct 1;16(1):8632. doi: 10.1038/s41467-025-63546-4. PubMed PMID: 41034193; PubMed Central PMCID: PMC12488948.

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Kim JS, Debban CL, Guzman DE, Hannan RT, Salvatore M, McGroder C, Zhang D, Podolanczuk AJ, Duprez DA, Ma SF, Huang Y, Sturek JM, Rich SS, Rotter JI, Deo R, Dubin RF, Pugashetti JV, Wang JM, Han MK, Oldham JM, Noth I, Woodruff PG, Ortega VE, Fanburg-Smith JC, Stelow EB, Moskaluk CA, Hoffman EA, Garcia CK, Bowler RP, Ganz P, Barr RG, Manichaikul A. Associations of High Attenuation Area-Related Proteomic Biomarkers with Fibrotic or Subpleural Interstitial Lung Abnormalities. Am J Respir Crit Care Med. 2025 Oct;211(10):1811-1822. doi: 10.1164/rccm.202503-0610OC. PubMed PMID: 40845333; PubMed Central PMCID: PMC12555059.

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Hu X, Webb-Robertson BM, Parikh HM, Nakayasu ES, Onengut-Gumuscu S, Chen WM, Frazer-Abel A, Metz TO, Rich SS, Rewers MJ, Manichaikul A. Genetic mapping of complement system proteins for islet autoimmunity in children with high risk of T1D. Commun Biol. 2025 Sep 26;8(1):1366. doi: 10.1038/s42003-025-08739-9. PubMed PMID: 41006577; PubMed Central PMCID: PMC12475137.

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Wang XW, Ryu MH, Cho MH, Castaldi P, Hersh CP, Silverman EK, Liu YY. A statistical physics approach to integrating multi-omics data for disease-module detection. Cell Rep Methods. 2025 Oct 20;5(10):101183. doi: 10.1016/j.crmeth.2025.101183. Epub 2025 Sep 19. PubMed PMID: 40975055; PubMed Central PMCID: PMC12570349.

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Patel RD, Buzkova P, Huber S, Landay A, Budoff M, Bis JC, Olson N, Rich S, Heckbert SR, Manichaikul A, Floyd J, Tracy RP, Psaty BM, Doyle MF, Sitlani CM, Delaney JAC, Fohner AE, Feinstein MJ. Associations of Immune Cell Subsets With Coronary Artery Calcium Incidence and Progression in the Multi-Ethnic Study of Atherosclerosis. J Am Heart Assoc. 2025 Oct 7;14(19):e042502. doi: 10.1161/JAHA.125.042502. Epub 2025 Sep 19. PubMed PMID: 40970536; PubMed Central PMCID: PMC12684560.

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Selvaraj MS, Li X, Li Z, Van Buren E, Haidermota S, Postupaka D, Hornsby W, Bis JC, Brody JA, Cade BE, Chung RH, Curran JE, Damrauer SM, de Las Fuentes L, de Vries PS, Duggirala R, Freedman BI, Graff M, Guo X, Hidalgo BA, Hou L, Irvin R, Judy R, Kalyani RR, Kelly TN, Konigsberg IR, Kral BG, Kwee LC, Levy D, Li C, Manichaikul AW, Martin LW, Montasser ME, Morrison AC, Naseri T, North KE, O'Connell JR, Palmer ND, Peyser PA, Reiner AP, Shah SH, Smit RAJ, Smith JA, Taylor KD, Tiwari H, Tsai MY, Viali S, Wang Z, Wang Y, Zhao W, Arnett DK, Blangero J, Boerwinkle E, Bowden DW, Carlson JC, Chen YI, Ellinor PT, Fornage M, He J, Heard-Costa N, Kaplan RC, Kardia SLR, Kooperberg C, Kraus WE, Lange LA, Loos RJF, Mitchell BD, Psaty BM, Rader DJ, Redline S, Rich SS, Yanek LR, Gibbs R, Gabriel S, Viaud-Martinez KA, Dutcher SK, Germer S, Kim R, Rotter JI, Lin X, Peloso GM, NHLBI Trans-Omics for Precision Medicine (TOPMed) Consortium, Natarajan P. Whole genome sequence analysis of low-density lipoprotein cholesterol across 246 K individuals. Genome Biol. 2025 Sep 9;26(1):273. doi: 10.1186/s13059-025-03698-0. PubMed PMID: 40926209; PubMed Central PMCID: PMC12418676.

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Zhang C, Konigsberg IR, He Y, Zhang J, Chikowore T, Feldman WB, Hu X, Ding Y, Pasaniuc B, Chang D, Chen Q, Lasky-Su JA, Hecker J, Tobin MD, Chen J, Kalra S, Pratte KA, Im HK, Wan ES, Manichaikul A, Silverman EK, Bowler RP, Lange LA, Ortega VE, Martin AR, Cho MH, Moll MR. Multi-Trait Polygenic Scores for COPD and COPD Exacerbations Implicate Druggable Proteins. medRxiv. 2025 Aug 26;. doi: 10.1101/2025.08.22.25334001. PubMed PMID: 40909810; PubMed Central PMCID: PMC12407601.

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Saw WY, Kim K, Huang Y, Yun JH, Ma X, Bacon J, Pershad Y, Levy D, O'Connor GT, Boerwinkle E, Barr RG, Rich SS, Rotter JI, Carson AP, Raffield LM, Gharib SA, Bartz TM, Psaty BM, Sofer T, North KE, Kaplan R, Oelsner EC, Manichaikul A, Bick AG, Sheet P, Reiner AP, NHLBI Trans-Omics for Precision Medicine Consortium, Jakubek YA, Auer PL, Cho MH, DeMeo DL. Mosaic Loss of Y chromosome associates with lung function, emphysema and epigenetic aging. medRxiv. 2025 Jul 30;. doi: 10.1101/2025.07.30.25332379. PubMed PMID: 40766134; PubMed Central PMCID: PMC12324632.

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Smit RAJ, Wade KH, Hui Q, Arias JD, Yin X, Christiansen MR, Yengo L, Preuss MH, Nakabuye M, Rocheleau G, Graham SE, Buchanan VL, Chittoor G, Graff M, Guindo-Martínez M, Lu Y, Marouli E, Sakaue S, Spracklen CN, Vedantam S, Wilson EP, Chen SH, Ferreira T, Ji Y, Karaderi T, Lüll K, Machado M, Malden DE, Medina-Gomez C, Moore A, Rüeger S, Akiyama M, Allison MA, Alvarez M, Andersen MK, Appadurai V, Arbeeva L, Bartell E, Bhaskar S, Bielak LF, Bis JC, Bollepalli S, Bork-Jensen J, Bradfield JP, Bradford Y, Brandl C, Braund PS, Brody JA, Broeckel U, Burgdorf KS, Cade BE, Cai Q, Camarda S, Campbell A, Cañadas-Garre M, Chai JF, Chesi A, Choi SH, Christofidou P, Couture C, Cuellar-Partida G, Danning R, Degenhardt F, Delgado GE, Delitala A, Demirkan A, Deng X, Dietl A, Dimitriou M, Dimitrov L, Dorajoo R, Eichelmann F, Eliasen AU, Engmann JE, Erdos MR, Fairhurst-Hunter Z, Farmaki AE, Faul JD, Fernandez-Lopez JC, Forer L, Frank M, Freitag-Wolf S, Fritsche LG, Fuchsberger C, Galesloot TE, Gao Y, Geller F, Giannakopoulou O, Giulianini F, Gjesing AP, Goel A, Gordon SD, Gorski M, Grove J, Guo X, Gustafsson S, Haessler J, Hansen TF, Havulinna AS, Haworth SJ, Heard-Costa N, Hemerich D, Highland HM, Hindy G, Ho YL, Hofer E, Holliday E, Horn K, Hornsby WE, Hottenga JJ, Huang H, Huang J, Huerta-Chagoya A, Huo S, Hwang MY, Hwu CM, Iha H, Ikeda DD, Isono M, Jackson AU, Jansen IE, Jiang Y, Johansson I, Jonsson A, Jørgensen T, Kalafati IP, Kanai M, Kanoni S, Kårhus LL, Kasturiratne A, Katsuya T, Kawaguchi T, Kember RL, Kentistou KA, Kim D, Kim HN, Kim YJ, Kleber ME, Knol MJ, Kurbasic A, Lauzon M, Le P, Lea R, Lee JY, Lee WJ, Leonard HL, Li H, Li SA, Li X, Li X, Liang J, Lin H, Lin K, Liu J, Liu X, Lo KS, Long J, Lores-Motta L, Luan J, Lyssenko V, Lyytikäinen LP, Mahajan A, Malik MZ, Mamakou V, Mangino M, Manichaikul A, Marten J, Mattheisen M, McDaid AF, Mei Q, Meiselbach H, Melendez TL, Milaneschi Y, Miller JE, Millwood IY, Mishra PP, Mitchell RE, Møllehave LT, Mononen N, Mucha S, Munz M, Mykkänen J, Nakatochi M, Nardone GG, Nelson CP, Nethander M, Nho CW, Nielsen AA, Nolte IM, Nongmaithem SS, Noordam R, Ntalla I, Nutile T, Pandit A, Pauper M, Petersen ERB, Petersen LV, Piluso F, Polašek O, Poveda A, Pyarajan S, Raffield LM, Rakugi H, Ramirez J, Rasheed A, Raven D, Rayner NW, Riveros C, Rohde R, Ruggiero D, Ruotsalainen SE, Ryan KA, Sabater-Lleal M, Santin A, Saxena R, Scholz M, Shen B, Shi J, Shin JH, Sidore C, Sidorenko J, Sim X, Slieker RC, Smith AV, Smith JA, Smyth LJ, Southam L, Steinthorsdottir V, Sun L, Takeuchi F, Taylor KD, Tayo BO, Tcheandjieu C, Terzikhan N, Tesolin P, Teumer A, Theusch E, Thompson DJ, Thorleifsson G, Timmers PRHJ, Trompet S, Turman C, Vaccargiu S, van der Laan SW, van der Most PJ, van Klinken JB, van Setten J, Verma SS, Verweij N, Veturi Y, Wang CA, Wang C, Wang JS, Wang L, Wang YX, Wang Z, Warren HR, Bin Wei W, Wen W, Wheeler WA, Wickremasinghe AR, Wielscher M, Winsvold BS, Wong A, Wuttke M, Xia R, Yamamoto K, Yang J, Yao J, Young H, Yousri NA, Yu L, Zeng L, Zhang W, Zhang X, Zhao JH, Zhao W, Zhou W, Zimmermann ME, Zoledziewska M, 't Hart LM, Adair LS, Adams HHH, Aguilar-Salinas CA, Al-Mulla F, Arnett DK, Asselbergs FW, Åsvold BO, Attia J, Banas B, Bandinelli S, Beilin LJ, Bennett DA, Bergler T, Bharadwaj D, Biino G, Boerwinkle E, Böger CA, Borja JB, Bouchard C, Bowden DW, Brandslund I, Brumpton B, Buring JE, Caulfield MJ, Chambers JC, Chandak GR, Chanock SJ, Chaturvedi N, Ida Chen YD, Chen Z, Cheng CY, Cho YS, Christensen K, Christophersen IE, Ciullo M, Cole JW, Collins FS, Concas MP, Cooper RS, Cruz M, Cucca F, Cutler MJ, Damrauer SM, Dantoft TM, de Borst GJ, de Geus EJC, de Groot LCPGM, De Jager PL, de Kleijn DPV, de Silva HJ, Dedoussis GV, den Hollander AI, Du S, Easton DF, Eckardt KU, Elders PJM, Eliassen AH, Ellinor PT, Elmståhl S, Erdmann J, Evans MK, Fatkin D, Feenstra B, Feitosa MF, Ferrucci L, Florez JC, Ford I, Fornage M, Franke A, Franks PW, Freedman BI, Gieger C, Girotto G, Golightly YM, Gonzalez-Villalpando C, Gordon-Larsen P, Grallert H, Grant SFA, Grarup N, Griffiths L, Gudnason V, Haiman C, Hakonarson H, Hansen T, Hartman CA, Hattersley AT, Hayward C, Heid IM, Heng CK, Hengstenberg C, Herzig KH, Hewitt AW, Hishigaki H, Hougaard DM, Hoyng CB, Huang PL, Huang W, Huang WY, Huffman JE, Hunt SC, Hutri N, Hveem K, Hyppönen E, Iacono WG, Ichihara S, Ikram MA, Isasi CR, Jarvelin MR, Jin ZB, Jöckel KH, Jonas JB, Joshi PK, Jousilahti P, Jukema JW, Kähönen M, Kamatani Y, Kang KD, Kaprio J, Kardia SLR, Karpe F, Kato N, Kavousi M, Kee F, Kessler T, Khera AV, Khor CC, Kiemeney LALM, Kim BJ, Kim EK, Kim HL, Kirchhof P, Kivimaki M, Koh WP, Koistinen HA, Kokkinos A, Kooner JS, Kooperberg C, Kovacs P, Kraaijeveld A, Kraft P, Krauss RM, Kumari M, Kutalik Z, Laakso M, Lange LA, Langenberg C, Launer LJ, Lee H, Lee NR, Lehtimäki T, Lemaitre RN, Li H, Li L, Lieb W, Lin X, Lind L, Linneberg A, Liu CT, Liu J, Loeffler M, London B, Lu F, Lubitz SA, Mackey DA, Magnusson PKE, Manson JE, Marcus GM, Marques Vidal P, Martin NG, März W, Matsuda F, McCarthy MI, McGarrah RW, McGue M, McKnight AJ, Medland SE, Mellström D, Metspalu A, Mitchell BD, Mitchell P, Mook-Kanamori DO, Mori TA, Morris AD, Mucci LA, Munroe PB, Nalls MA, Nazarian S, Nelson AE, Neville MJ, Newton-Cheh C, Nielsen CS, Niinikoski H, Nikus K, Nöthen MM, Ogunniyi A, Ohlsson C, Oldehinkel AJ, Orozco L, Pahkala K, Pajukanta P, Palmer CNA, Parra EJ, Pattaro C, Pedersen O, Pennell CE, Penninx BWJH, Perusse L, Peters A, Peyser PA, Porteous DJ, Posthuma D, Power C, Pramstaller PP, Province MA, Psaty BM, Qi Q, Qu J, Rader DJ, Raitakari OT, Rallidis LS, Rao DC, Redline S, Reilly DF, Reiner AP, Rhee SY, Ridker PM, Rienstra M, Ripatti S, Ritchie MD, Rivadeneira F, Roden DM, Rosendaal FR, Rotter JI, Rudan I, Rutters F, Ryu S, Sabanayagam C, Salako B, Saleheen D, Salomaa V, Samani NJ, Sanghera DK, Sattar N, Schmidt B, Schmidt H, Schmidt R, Schulze MB, Schunkert H, Scott LJ, Scott RJ, Sever P, Sheu WHH, Shoemaker MB, Shu XO, Simonsick EM, Sims M, Singleton AB, Sinner MF, Smith JG, Snieder H, Spector TD, Spedicati B, Stampfer MJ, Stark KJ, Strachan DP, Tabara Y, Tai ES, Tang H, Tardif JC, Thanaraj TA, Tönjes A, Tuomi T, Tuomilehto J, Tusié-Luna MT, van Dam RM, van der Harst P, Van der Velde N, van Duijn CM, van Schoor NM, Vitart V, Vohl MC, Völker U, Vollenweider P, Völzke H, Vrieze S, Wacher-Rodarte NH, Walker M, Wander GS, Wareham NJ, Watanabe RM, Watkins H, Weir DR, Werge TM, Widen E, Willemsen G, Willett WC, Wilson JF, Wilson PWF, Wong TY, Woo JT, Wright AF, Xu H, Yajnik CS, Yang J, Yokota M, Yuan JM, Zeggini E, Zemel BS, Zheng W, Zhu X, Zillikens MC, Zonderman AB, Zwart JA, 23andMe Research Team, DiscovEHR (DiscovEHR and MyCode Community Health Initiative), eMERGE (Electronic Medical Records and Genomics Network), GPC-UGR, PRACTICAL Consortium, Understanding Society Scientific Group, VA Million Veteran Program, Abecasis GR, Assimes TL, Auton A, Boehnke M, Chasman DI, Esko T, Stefansson K, Lettre G, Lindgren CM, Ng MCY, O'Donnell CJ, Thorsteinsdottir U, Visscher PM, Walters RG, Winkler TW, Wood AR, Deloukas P, Frayling TM, Justice AE, Kilpeläinen TO, Locke AE, Mohlke KL, North KE, Okada Y, Willer CJ, Young KL, Fatumo S, McCaffery JM, Timpson NJ, Hirschhorn JN, Sun YV, Berndt SI, Loos RJF. 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Guzman DE, Ruvuna L, Guo CJ, Sun Y, Pratte KA, Manichaikul AW, Kim JS, Post WS, Bertoni AG, Allen NB, Watson KE, Pankow JS, Hoffman EA, Dubin RF, Deo R, Barjaktarevic IZ, Bleecker ER, Cooper CB, Ortega VE, Hastie AT, Paine R 3rd, Wells JM, Curtis JL, Silverman EK, Woodruff PG, Garcia CK, Rotter JI, Bowler RP, Ganz P, Barr RG. Proteomic discovery analysis of quantitatively assessed emphysema in the general population. The MESA Lung Study. Respir Res. 2025 Jul 4;26(1):236. doi: 10.1186/s12931-025-03312-8. PubMed PMID: 40616090; PubMed Central PMCID: PMC12228189.

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Bentley AR, Brown MR, Musani SK, Schwander KL, Winkler TW, Sims M, Kilpeläinen TO, Aschard H, Bartz TM, Bielak LF, Chai JF, Chitrala KN, Franceschini N, Graff M, Guo X, Hartwig FP, Horimoto ARVR, Lim E, Liu Y, Manning AK, Nolte IM, Noordam R, Richard MA, Smith AV, Sung YJ, Vojinovic D, Wang R, Wang Y, Feitosa MF, Harris SE, Lyytikäinen LP, Pistis G, Rauramaa R, van der Most PJ, Ware E, Weiss S, Wen W, Yanek LR, Arking DE, Arnett DK, Ballantyne C, Boerwinkle E, Chen YI, Daviglus ML, de Las Fuentes L, de Vries PS, Delaney JAC, Fretts AM, Ekunwe L, Faul JD, Gallo LC, Heikkinen S, Homuth G, Ikram MA, Isasi CR, Jonas JB, Keltikangas-Järvinen L, Komulainen P, Kraja AT, Krieger JE, Launer L, Lifelines Cohort Study, Liu J, Lohman K, Luik AI, Manichaikul AW, Marques-Vidal P, Milaneschi Y, Mwasongwe SE, O'Connell JR, Rice K, Rich SS, Schreiner PJ, Schwettmann L, Shikany JM, Shu XO, Smith JA, Snieder H, Sotoodehnia N, Tai ES, Taylor KD, Tinker L, Tsai MY, Uitterlinden AG, van Duijn CM, van Heemst D, Waldenberger M, Wallace RB, Wee HL, Weir DR, Wei WB, Willems van Dijk K, Wilson G, Yao J, Young KL, Zhang X, Zhao W, Zhu X, Zonderman AB, Deary IJ, Gieger C, Grabe HJ, Lakka TA, Lehtimäki T, Oldehinkel AJ, Preisig M, Wang YX, Zheng W, Evans MK, Province M, Gauderman J, Gudnason V, Hartman CA, Horta BL, Kardia SLR, Kooperberg C, Liu CT, Mook-Kanamori DO, Penninx BW, Pereira AC, Peyser PA, Psaty BM, Rotter JI, Sim X, North KE, Rao DC, Bierut L, Miller CL, Morrison AC, Rotimi CN, Fornage M, Fox ER. Multi-ancestry genome-wide association analyses incorporating SNP-by-psychosocial interactions identify novel loci for serum lipids. Transl Psychiatry. 2025 Jun 20;15(1):207. doi: 10.1038/s41398-025-03418-z. PubMed PMID: 40537477; PubMed Central PMCID: PMC12179276.

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Goldman-Pham R, Alter MP, Bao R, Collins SÉ, Debban CL, Allinson JP, Ambler A, Bertoni AG, Caspi A, Lovinsky-Desir S, Ekstrom MP, Engert JC, Jacobs DR Jr, Malinsky D, Manichaikul A, Michos ED, Moffitt TE, Oelsner EC, Ramrakha S, Rich SS, Sack C, Stanojevic S, Subbarao P, Sugden K, Theodore R, Watson KE, Williams B, Yang B, Dupuis J, Shaheen SO, Barr RG, Hancox RJ, Smith BM. Quantifying the impact of early-life growth adversity on later-life health. medRxiv. 2025 Jun 17;. doi: 10.1101/2025.06.16.25327714. PubMed PMID: 40585119; PubMed Central PMCID: PMC12204282.

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Duy PQ, Kiziltug E, Greenberg ABW, Mehta NH, Hao LT, Fortes C, Mullany S, Fan B, Manichaikul A, Teich AF, Chan D, Alper SL, Hyman BT, Arnold SE, McKhann GM, Frosch MP, Kahle KT. Single-cell elderly blood-CSF atlas implicates peripherally influenced immune dysregulation in normal pressure hydrocephalus. Proc Natl Acad Sci U S A. 2025 May 13;122(19):e2412159122. doi: 10.1073/pnas.2412159122. Epub 2025 May 5. PubMed PMID: 40324076; PubMed Central PMCID: PMC12087963.

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Husain-Syed F, Mallawaarachchi IV, Axelsson GT, Ma JZ, Debban CL, Hoffman EA, McGroder C, Anderson MR, Raghu G, Kawut SM, Podolanczuk AJ, Manichaikul A, Rich SS, Hunninghake GM, Hatabu H, Hida T, Launer LJ, Scialla JJ, Guðnason V, Guðmundsson G, Garcia CK, Oelsner EC, Barr RG, Kim JS. Associations of albuminuria with interstitial lung abnormalities in older community-dwelling adults confounded by age. ERJ Open Res. 2025 May;11(3). doi: 10.1183/23120541.01221-2024. eCollection 2025 May. PubMed PMID: 40551804; PubMed Central PMCID: PMC12183733.

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Wang L, Markus H, Chen D, Chen S, Zhang F, Gao S, Khunsriraksakul C, Chen F, Olsen N, Foulke G, Jiang B, Carrel L, Liu DJ. An atlas of single-cell eQTLs dissects autoimmune disease genes and identifies novel drug classes for treatment. Cell Genom. 2025 Apr 9;5(4):100820. doi: 10.1016/j.xgen.2025.100820. Epub 2025 Mar 27. PubMed PMID: 40154479; PubMed Central PMCID: PMC12008810.

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Czarnota P, MacLeod JL, Gupta N, Manichaikul A, Shim YM. Sex Differences in Chronic Obstructive Pulmonary Disease: Implications for Pathogenesis, Diagnosis, and Treatment. Int J Mol Sci. 2025 Mar 18;26(6). doi: 10.3390/ijms26062747. Review. PubMed PMID: 40141389; PubMed Central PMCID: PMC11942865.

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Wei X, Qian W, Narasimhan H, Chan T, Liu X, Arish M, Young S, Li C, Cheon IS, Yu Q, Almeida-Santos G, Zhao XY, Yeatts EV, Spear OJ, Yi M, Parimon T, Fang Y, Hahn YS, Bullock TNJ, Somerville LA, Kaplan MH, Sperling AI, Shim YM, Vassallo R, Chen P, Ewald SE, Roden AC, Que J, Jiang D, Sun J. Macrophage peroxisomes guide alveolar regeneration and limit SARS-CoV-2 tissue sequelae. Science. 2025 Mar 7;387(6738):eadq2509. doi: 10.1126/science.adq2509. Epub 2025 Mar 7. PubMed PMID: 40048515; PubMed Central PMCID: PMC12681967.

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Zhang J, Hobbs BD, Silverman EK, Sparrow D, Ortega VE, Xu H, Zhang C, Dupuis J, Walkey AJ, O'Connor GT, Cho MH, Moll M. Polygenic Risk Score Added to Conventional Case Finding to Identify Undiagnosed Chronic Obstructive Pulmonary Disease. JAMA. 2025 Mar 4;333(9):784-792. doi: 10.1001/jama.2024.24212. PubMed PMID: 39841442; PubMed Central PMCID: PMC11880956.

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Nicholas JC, Katz DH, Tahir UA, Debban CL, Aguet F, Blackwell T, Bowler RP, Broadaway KA, Chen J, Clish CB, Coresh J, Cornell E, Cruz DE, Deo R, Doyle MF, Durda P, Ekunwe L, Floyd JS, Gill D, Guo X, Hoogeveen RC, Johnson C, Lange LA, Li Y, Manning A, Meigs JB, Mi MY, Mychaleckyj JC, Olson NC, Pratte KA, Psaty BM, Reiner AP, Ruan P, Sevilla-Gonzalez M, Shah AM, Sun Q, Tracy RP, Wen J, Wood AC, Wilson JG, Young KL, Yu B, Rooney MR, Manichaikul A, Dubin R, Mohlke KL, Rich SS, Rotter JI, Ganz P, Gerszten RE, Taylor KD, Raffield LM. Cross-Ancestry Comparison of Aptamer and Antibody Proteomics Measures. Res Sq. 2025 Feb 13;. doi: 10.21203/rs.3.rs-5968391/v1. PubMed PMID: 39989965; PubMed Central PMCID: PMC11844639.

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Kalra S, Hobbs B, Hunninghake GM, Menon AA, Putman R, Cutting C, Hatabu H, Silverman EK, Wan E, Cho MH, Moll M. The Association of Interstitial Lung Abnormalities and Preserved Ratio Impaired Spirometry With Mortality. Chest. 2025 Jul;168(1):136-145. doi: 10.1016/j.chest.2025.02.002. Epub 2025 Feb 11. PubMed PMID: 39947315; PubMed Central PMCID: PMC12264343.

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Hu X, Webb-Robertson BM, Parikh HM, Nakayasu ES, Onengut-Gumuscu S, Chen WM, Frazer-Abel A, Metz TO, Rich SS, Rewers MJ, Manichaikul A. Genome-wide mapping of complement system proteins for islet autoimmunity in the DAISY and TEDDY children. Res Sq. 2025 Feb 10;. doi: 10.21203/rs.3.rs-5975824/v1. PubMed PMID: 39989961; PubMed Central PMCID: PMC11844657.

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Fike AJ, Bricker KN, Gonzalez MV, Maharjan A, Bui T, Nuon K, Emrich SM, Weber JL, Luckenbill SA, Choi NM, Sauteraud R, Liu DJ, Olsen NJ, Caricchio R, Trebak M, Chodisetti SB, Rahman ZSM. IRF7 controls spontaneous autoimmune germinal center and plasma cell checkpoints. bioRxiv. 2025 Feb 8;. doi: 10.1101/2025.02.04.636277. PubMed PMID: 39974943; PubMed Central PMCID: PMC11838595.

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Wang C, Markus H, Diwadkar AR, Khunsriraksakul C, Carrel L, Li B, Zhong X, Wang X, Zhan X, Foulke GT, Olsen NJ, Liu DJ, Jiang B. Integrating electronic health records and GWAS summary statistics to predict the progression of autoimmune diseases from preclinical stages. Nat Commun. 2025 Jan 2;16(1):180. doi: 10.1038/s41467-024-55636-6. PubMed PMID: 39747168; PubMed Central PMCID: PMC11695684.

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Kim JS, Flack KF, Malik V, Manichaikul A, Sakaue S, Luo Y, McGroder CF, Salvatore M, Anderson MR, Hoffman EA, Podolanczuk AJ, Yun JH, McDermott GC, Sparks JA, Putman R, Moll M, Rich SS, Rotter JI, Noth I, Raghu G, Giles JT, Winchester R, Raychaudhuri S, Hunninghake GM, Cho MH, Garcia CK, Barr RG, Bernstein EJ. Genomic and Serological Rheumatoid Arthritis Biomarkers, MUC5B Promoter Variant, and Interstitial Lung Abnormalities. Ann Am Thorac Soc. 2025 Jan;22(1):64-71. doi: 10.1513/AnnalsATS.202403-238OC. PubMed PMID: 39405163; PubMed Central PMCID: PMC11708761.

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McDermott GC, Hayashi K, Yoshida K, Juge PA, Moll M, Cho MH, Doyle TJ, Kinney GL, Dellaripa PF, Wallace ZS, Regan EA, Hunninghake GM, Silverman EK, Ash SY, Estepar RSJ, Washko GR, Sparks JA. Rheumatoid arthritis, quantitative parenchymal lung features and mortality among smokers. Rheumatology (Oxford). 2025 Jan 1;64(1):133-142. doi: 10.1093/rheumatology/kead645. PubMed PMID: 38048611; PubMed Central PMCID: PMC11701304.

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Debban CL, Ambalavanan A, Ghosh A, Li Z, Buschur KL, Ma Y, George E, Pistenmaa C, Bertoni AG, Oelsner EC, Michos ED, Moraes TJ, Jacobs DR Jr, Christenson S, Bhatt SP, Kaner RJ, Simons E, Turvey SE, Vameghestahbanati M, Engert JC, Kirby M, Bourbeau J, Tan WC, Gabriel SB, Gupta N, Woodruff PG, Subbarao P, Ortega VE, Bleecker ER, Meyers DA, Rich SS, Hoffman EA, Barr RG, Cho MH, Bossé Y, Duan Q, Manichaikul A, Smith BM. Dysanapsis Genetic Risk Predicts Lung Function Across the Lifespan. Am J Respir Crit Care Med. 2024 Dec 15;210(12):1421-1431. doi: 10.1164/rccm.202401-0011OC. PubMed PMID: 38935874; PubMed Central PMCID: PMC11716030.

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Zhang D, Gao B, Feng Q, Manichaikul A, Peloso GM, Tracy RP, Durda P, Taylor KD, Liu Y, Johnson WC, Gabriel S, Gupta N, Smith JD, Aguet F, Ardlie KG, Blackwell TW, Gerszten RE, Rich SS, Rotter JI, Scott LJ, Zhou X, Lee S. Proteome-wide association studies for blood lipids and comparison with transcriptome-wide association studies. HGG Adv. 2025 Jan 9;6(1):100383. doi: 10.1016/j.xhgg.2024.100383. Epub 2024 Nov 14. PubMed PMID: 39543875; PubMed Central PMCID: PMC11650301.

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Borda V, Loesch DP, Guo B, Laboulaye R, Veliz-Otani D, French JN, Leal TP, Gogarten SM, Ikpe S, Gouveia MH, Mendes M, Abecasis GR, Alvim I, Arboleda-Bustos CE, Arboleda G, Arboleda H, Barreto ML, Barwick L, Bezzera MA, Blangero J, Borges V, Caceres O, Cai J, Chana-Cuevas P, Chen Z, Custer B, Dean M, Dinardo C, Domingos I, Duggirala R, Dieguez E, Fernandez W, Ferraz HB, Gilliland F, Guio H, Horta B, Curran JE, Johnsen JM, Kaplan RC, Kelly S, Kenny EE, Konkle BA, Kooperberg C, Lescano A, Lima-Costa MF, Loos RJF, Manichaikul A, Meyers DA, Naslavsky MS, Nickerson DA, North KE, Padilla C, Preuss M, Raggio V, Reiner AP, Rich SS, Rieder CR, Rienstra M, Rotter JI, Rundek T, Sacco RL, Sanchez C, Sankaran VG, Santos-Lobato BL, Schumacher-Schuh AF, Scliar MO, Silverman EK, Sofer T, Lasky-Su J, Tumas V, Weiss ST, Latin American Research Consortium on the Genetics of Parkinson’s Disease (LARGE-PD), National Institute of Neurological Disorders and Stroke (NINDS) Stroke Genetics Network (SiGN) Consortium, Trans-Omics for Precision Medicine (TOPMed) Population Genetics Working Group, Mata IF, Hernandez RD, Tarazona-Santos E, O'Connor TD. Genetics of Latin American Diversity Project: Insights into population genetics and association studies in admixed groups in the Americas. Cell Genom. 2024 Nov 13;4(11):100692. doi: 10.1016/j.xgen.2024.100692. Epub 2024 Oct 31. PubMed PMID: 39486408; PubMed Central PMCID: PMC11605695.

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Tan Y, Wang L, Zhang H, Pan M, Liu DJ, Zhan X, Li B. Interpretable GWAS by linking clinical phenotypes to quantifiable immune repertoire components. Commun Biol. 2024 Oct 20;7(1):1357. doi: 10.1038/s42003-024-07010-x. PubMed PMID: 39428403; PubMed Central PMCID: PMC11491462.

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Liu S, Zhu J, Zhong H, Wu C, Xue H, Darst BF, Guo X, Durda P, Tracy RP, Liu Y, Johnson WC, Taylor KD, Manichaikul AW, Goodarzi MO, Gerszten RE, Clish CB, Chen YI, Highland H, Haiman CA, Gignoux CR, Lange L, Conti DV, Raffield LM, Wilkens L, Marchand LL, North KE, Young KL, Loos RJ, Buyske S, Matise T, Peters U, Kooperberg C, Reiner AP, Yu B, Boerwinkle E, Sun Q, Rooney MR, Echouffo-Tcheugui JB, Daviglus ML, Qi Q, Mancuso N, Li C, Deng Y, Manning A, Meigs JB, Rich SS, Rotter JI, Wu L. Identification of proteins associated with type 2 diabetes risk in diverse racial and ethnic populations. Diabetologia. 2024 Dec;67(12):2754-2770. doi: 10.1007/s00125-024-06277-3. Epub 2024 Sep 30. PubMed PMID: 39349773; PubMed Central PMCID: PMC11963907.

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Tahir UA, Barber JL, Cruz DE, Kars ME, Deng S, Tuftin B, Gillman MG, Benson MD, Robbins JM, Chen ZZ, Rao P, Katz DH, Farrell L, Sofer T, Hall ME, Ekunwe L, Tracy RP, Durda P, Taylor KD, Liu Y, Johnson WC, Guo X, Chen YI, Manichaikul AW, Jain D, NHLBI Trans-Omics for Precision Medicine Consortium, Wang TJ, Reiner AP, Natarajan P, Itan Y, Rich SS, Rotter JI, Wilson JG, Raffield LM, Gerszten RE. Proteogenomic analysis integrated with electronic health records data reveals disease-associated variants in Black Americans. J Clin Invest. 2024 Sep 24;134(21). doi: 10.1172/JCI181802. PubMed PMID: 39316441; PubMed Central PMCID: PMC11527441.