My Bibliography

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Sun Y, Wang X, Zhang DY, Zhang Z, Bhattarai JP, Wang Y, Park KH, Dong W, Hung YF, Yang Q, Zhang F, Rajamani K, Mu S, Kennedy BC, Hong Y, Galanaugh J, Sambangi A, Kim SH, Wheeler G, Gonçalves T, Wang Q, Geschwind DH, Kawaguchi R, Viaene AN, Helbig I, Kessler SK, Hoke A, Wang H, Xu F, Binder ZA, Isaac Chen H, Pai EL, Stone S, Nasrallah MP, Christian KM, Fuccillo M, Toni N, Wu Z, Cheng HJ, O'Rourke DM, Ma M, Ming GL, Song H. Brain-wide neuronal circuit connectome of human glioblastoma. Nature. 2025 May;641(8061):222-231. doi: 10.1038/s41586-025-08634-7. Epub 2025 Jan 16. PubMed PMID: 39821165; PubMed Central PMCID: PMC12347542.

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Frechou MA, Martin SS, McDermott KD, Huaman EA, Gökhan Ş, Tomé WA, Coen-Cagli R, Gonçalves JT. Adult neurogenesis improves spatial information encoding in the mouse hippocampus. Nat Commun. 2024 Jul 30;15(1):6410. doi: 10.1038/s41467-024-50699-x. PubMed PMID: 39080283; PubMed Central PMCID: PMC11289285.

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McDermott KD, Frechou MA, Jordan JT, Martin SS, Gonçalves JT. Delayed formation of neural representations of space in aged mice. Aging Cell. 2023 Sep;22(9):e13924. doi: 10.1111/acel.13924. Epub 2023 Jul 25. PubMed PMID: 37491802; PubMed Central PMCID: PMC10497831.

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McDermott KD, Frechou MA, Jordan JT, Martin SS, Gonçalves JT. Delayed formation of neural representations of space in aged mice. bioRxiv. 2023 Mar 9;. doi: 10.1101/2023.03.03.531021. PubMed PMID: 37034736; PubMed Central PMCID: PMC10081265.

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Nasrallah K, Frechou MA, Yoon YJ, Persaud S, Gonçalves JT, Castillo PE. Seizure-induced strengthening of a recurrent excitatory circuit in the dentate gyrus is proconvulsant. Proc Natl Acad Sci U S A. 2022 Aug 9;119(32):e2201151119. doi: 10.1073/pnas.2201151119. Epub 2022 Aug 5. PubMed PMID: 35930664; PubMed Central PMCID: PMC9371717.

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Guo N, McDermott KD, Shih YT, Zanga H, Ghosh D, Herber C, Meara WR, Coleman J, Zagouras A, Wong LP, Sadreyev R, Gonçalves JT, Sahay A. Transcriptional regulation of neural stem cell expansion in the adult hippocampus. Elife. 2022 Jan 4;11. doi: 10.7554/eLife.72195. PubMed PMID: 34982030; PubMed Central PMCID: PMC8820733.

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Krzyspiak J, Yan J, Ghosh HS, Galinski B, Lituma PJ, Alvina K, Quezada A, Kee S, Grońska-Pęski M, Tai Y, McDermott K, Gonçalves JT, Zukin RS, Weiser DA, Castillo PE, Khodakhah K, Hébert JM. Donor-derived vasculature is required to support neocortical cell grafts after stroke. Stem Cell Res. 2022 Mar;59:102642. doi: 10.1016/j.scr.2021.102642. Epub 2021 Dec 24. PubMed PMID: 34971934; PubMed Central PMCID: PMC11495404.

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Jordan JT, McDermott KD, Frechou MA, Shtrahman M, Gonçalves JT. Treadmill-based task for assessing spatial memory in head-fixed mice. STAR Protoc. 2021 Sep 17;2(3):100770. doi: 10.1016/j.xpro.2021.100770. eCollection 2021 Sep 17. PubMed PMID: 34471907; PubMed Central PMCID: PMC8387801.

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Johnston S, Parylak SL, Kim S, Mac N, Lim C, Gallina I, Bloyd C, Newberry A, Saavedra CD, Novak O, Gonçalves JT, Gage FH, Shtrahman M. AAV ablates neurogenesis in the adult murine hippocampus. Elife. 2021 Jul 14;10. doi: 10.7554/eLife.59291. PubMed PMID: 34259630; PubMed Central PMCID: PMC8331179.

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Grońska-Pęski M, Gonçalves JT, Hébert JM. Enriched Environment Promotes Adult Hippocampal Neurogenesis through FGFRs. J Neurosci. 2021 Mar 31;41(13):2899-2910. doi: 10.1523/JNEUROSCI.2286-20.2021. Epub 2021 Feb 26. PubMed PMID: 33637561; PubMed Central PMCID: PMC8018882.

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Mansour AA, Gonçalves JT, Bloyd CW, Li H, Fernandes S, Quang D, Johnston S, Parylak SL, Jin X, Gage FH. An in vivo model of functional and vascularized human brain organoids. Nat Biotechnol. 2018 Jun;36(5):432-441. doi: 10.1038/nbt.4127. Epub 2018 Apr 16. PubMed PMID: 29658944; PubMed Central PMCID: PMC6331203.

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O'Donnell C, Gonçalves JT, Portera-Cailliau C, Sejnowski TJ. Beyond excitation/inhibition imbalance in multidimensional models of neural circuit changes in brain disorders. Elife. 2017 Oct 11;6. doi: 10.7554/eLife.26724. PubMed PMID: 29019321; PubMed Central PMCID: PMC5663477.

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O'Donnell C, Gonçalves JT, Whiteley N, Portera-Cailliau C, Sejnowski TJ. The Population Tracking Model: A Simple, Scalable Statistical Model for Neural Population Data. Neural Comput. 2017 Jan;29(1):50-93. doi: 10.1162/NECO_a_00910. Epub 2016 Nov 21. PubMed PMID: 27870612; PubMed Central PMCID: PMC5712479.

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Gonçalves JT, Schafer ST, Gage FH. Adult Neurogenesis in the Hippocampus: From Stem Cells to Behavior. Cell. 2016 Nov 3;167(4):897-914. doi: 10.1016/j.cell.2016.10.021. Review. PubMed PMID: 27814520.

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Poo MM, Pignatelli M, Ryan TJ, Tonegawa S, Bonhoeffer T, Martin KC, Rudenko A, Tsai LH, Tsien RW, Fishell G, Mullins C, Gonçalves JT, Shtrahman M, Johnston ST, Gage FH, Dan Y, Long J, Buzsáki G, Stevens C. What is memory? The present state of the engram. BMC Biol. 2016 May 19;14:40. doi: 10.1186/s12915-016-0261-6. PubMed PMID: 27197636; PubMed Central PMCID: PMC4874022.

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Gonçalves JT, Bloyd CW, Shtrahman M, Johnston ST, Schafer ST, Parylak SL, Tran T, Chang T, Gage FH. In vivo imaging of dendritic pruning in dentate granule cells. Nat Neurosci. 2016 Jun;19(6):788-91. doi: 10.1038/nn.4301. Epub 2016 May 2. PubMed PMID: 27135217; PubMed Central PMCID: PMC4941946.

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Johnston ST, Shtrahman M, Parylak S, Gonçalves JT, Gage FH. Paradox of pattern separation and adult neurogenesis: A dual role for new neurons balancing memory resolution and robustness. Neurobiol Learn Mem. 2016 Mar;129:60-8. doi: 10.1016/j.nlm.2015.10.013. Epub 2015 Nov 6. Review. PubMed PMID: 26549627; PubMed Central PMCID: PMC4792723.

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Mertens J, Paquola ACM, Ku M, Hatch E, Böhnke L, Ladjevardi S, McGrath S, Campbell B, Lee H, Herdy JR, Gonçalves JT, Toda T, Kim Y, Winkler J, Yao J, Hetzer MW, Gage FH. Directly Reprogrammed Human Neurons Retain Aging-Associated Transcriptomic Signatures and Reveal Age-Related Nucleocytoplasmic Defects. Cell Stem Cell. 2015 Dec 3;17(6):705-718. doi: 10.1016/j.stem.2015.09.001. Epub 2015 Oct 8. PubMed PMID: 26456686; PubMed Central PMCID: PMC5929130.

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Gonçalves JT, Anstey JE, Golshani P, Portera-Cailliau C. Circuit level defects in the developing neocortex of Fragile X mice. Nat Neurosci. 2013 Jul;16(7):903-9. doi: 10.1038/nn.3415. Epub 2013 Jun 2. PubMed PMID: 23727819; PubMed Central PMCID: PMC3695061.

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Cheng A, Gonçalves JT, Golshani P, Arisaka K, Portera-Cailliau C. Simultaneous two-photon calcium imaging at different depths with spatiotemporal multiplexing. Nat Methods. 2011 Feb;8(2):139-42. doi: 10.1038/nmeth.1552. Epub 2011 Jan 9. PubMed PMID: 21217749; PubMed Central PMCID: PMC3076599.

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Gonçalves JT, Stühmer W. Calmodulin interaction with hEAG1 visualized by FRET microscopy. PLoS One. 2010 May 27;5(5):e10873. doi: 10.1371/journal.pone.0010873. PubMed PMID: 20523736; PubMed Central PMCID: PMC2877719.

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Golshani P, Gonçalves JT, Khoshkhoo S, Mostany R, Smirnakis S, Portera-Cailliau C. Internally mediated developmental desynchronization of neocortical network activity. J Neurosci. 2009 Sep 2;29(35):10890-9. doi: 10.1523/JNEUROSCI.2012-09.2009. PubMed PMID: 19726647; PubMed Central PMCID: PMC2771734.

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Trajkovic K, Dhaunchak AS, Goncalves JT, Wenzel D, Schneider A, Bunt G, Nave KA, Simons M. Neuron to glia signaling triggers myelin membrane exocytosis from endosomal storage sites. J Cell Biol. 2006 Mar 13;172(6):937-48. doi: 10.1083/jcb.200509022. Epub 2006 Mar 6. PubMed PMID: 16520383; PubMed Central PMCID: PMC2063736.

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Schapper F, Gonçalves JT, Oheim M. Fluorescence imaging with two-photon evanescent wave excitation. Eur Biophys J. 2003 Nov;32(7):635-43. doi: 10.1007/s00249-003-0326-7. Epub 2003 Sep 3. PubMed PMID: 12955359.