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Jennings JH, Kim CK, Marshel JH, Raffiee M, Ye L, Quirin S, Pak S, Ramakrishnan C, Deisseroth K. Interacting neural ensembles in orbitofrontal cortex for social and feeding behaviour. Nature. 2019 Jan;565(7741):645-649. doi: 10.1038/s41586-018-0866-8. Epub 2019 Jan 16. PubMed PMID: 30651638; PubMed Central PMCID: PMC6447429.
Kim CK, Ye L, Jennings JH, Pichamoorthy N, Tang DD, Yoo AW, Ramakrishnan C, Deisseroth K. Molecular and Circuit-Dynamical Identification of Top-Down Neural Mechanisms for Restraint of Reward Seeking. Cell. 2017 Aug 24;170(5):1013-1027.e14. doi: 10.1016/j.cell.2017.07.020. Epub 2017 Aug 17. PubMed PMID: 28823561; PubMed Central PMCID: PMC5729206.
Hsueh B, Burns VM, Pauerstein P, Holzem K, Ye L, Engberg K, Wang AC, Gu X, Chakravarthy H, Arda HE, Charville G, Vogel H, Efimov IR, Kim S, Deisseroth K. Pathways to clinical CLARITY: volumetric analysis of irregular, soft, and heterogeneous tissues in development and disease. Sci Rep. 2017 Jul 19;7(1):5899. doi: 10.1038/s41598-017-05614-4. PubMed PMID: 28724969; PubMed Central PMCID: PMC5517617.
Carus-Cadavieco M, Gorbati M, Ye L, Bender F, van der Veldt S, Kosse C, Börgers C, Lee SY, Ramakrishnan C, Hu Y, Denisova N, Ramm F, Volitaki E, Burdakov D, Deisseroth K, Ponomarenko A, Korotkova T. Gamma oscillations organize top-down signalling to hypothalamus and enable food seeking. Nature. 2017 Feb 9;542(7640):232-236. doi: 10.1038/nature21066. Epub 2017 Feb 1. PubMed PMID: 28146472.
Ye L, Allen WE, Thompson KR, Tian Q, Hsueh B, Ramakrishnan C, Wang AC, Jennings JH, Adhikari A, Halpern CH, Witten IB, Barth AL, Luo L, McNab JA, Deisseroth K. Wiring and Molecular Features of Prefrontal Ensembles Representing Distinct Experiences. Cell. 2016 Jun 16;165(7):1776-1788. doi: 10.1016/j.cell.2016.05.010. Epub 2016 May 26. PubMed PMID: 27238022; PubMed Central PMCID: PMC5708551.
Lerner TN, Ye L, Deisseroth K. Communication in Neural Circuits: Tools, Opportunities, and Challenges. Cell. 2016 Mar 10;164(6):1136-1150. doi: 10.1016/j.cell.2016.02.027. Review. PubMed PMID: 26967281; PubMed Central PMCID: PMC5725393.
Adhikari A, Lerner TN, Finkelstein J, Pak S, Jennings JH, Davidson TJ, Ferenczi E, Gunaydin LA, Mirzabekov JJ, Ye L, Kim SY, Lei A, Deisseroth K. Basomedial amygdala mediates top-down control of anxiety and fear. Nature. 2015 Nov 12;527(7577):179-85. doi: 10.1038/nature15698. Epub 2015 Nov 4. PubMed PMID: 26536109; PubMed Central PMCID: PMC4780260.
Font-Burgada J, Shalapour S, Ramaswamy S, Hsueh B, Rossell D, Umemura A, Taniguchi K, Nakagawa H, Valasek MA, Ye L, Kopp JL, Sander M, Carter H, Deisseroth K, Verma IM, Karin M. Hybrid Periportal Hepatocytes Regenerate the Injured Liver without Giving Rise to Cancer. Cell. 2015 Aug 13;162(4):766-79. doi: 10.1016/j.cell.2015.07.026. PubMed PMID: 26276631; PubMed Central PMCID: PMC4545590.
Hsiang HL, Epp JR, van den Oever MC, Yan C, Rashid AJ, Insel N, Ye L, Niibori Y, Deisseroth K, Frankland PW, Josselyn SA. Manipulating a "cocaine engram" in mice. J Neurosci. 2014 Oct 15;34(42):14115-27. doi: 10.1523/JNEUROSCI.3327-14.2014. PubMed PMID: 25319707; PubMed Central PMCID: PMC6705287.
Tomer R, Ye L, Hsueh B, Deisseroth K. Advanced CLARITY for rapid and high-resolution imaging of intact tissues. Nat Protoc. 2014 Jul;9(7):1682-97. doi: 10.1038/nprot.2014.123. Epub 2014 Jun 19. PubMed PMID: 24945384; PubMed Central PMCID: PMC4096681.
Zhang MD, Tortoriello G, Hsueh B, Tomer R, Ye L, Mitsios N, Borgius L, Grant G, Kiehn O, Watanabe M, Uhlén M, Mulder J, Deisseroth K, Harkany T, Hökfelt TG. Neuronal calcium-binding proteins 1/2 localize to dorsal root ganglia and excitatory spinal neurons and are regulated by nerve injury. Proc Natl Acad Sci U S A. 2014 Mar 25;111(12):E1149-58. doi: 10.1073/pnas.1402318111. Epub 2014 Mar 10. PubMed PMID: 24616509; PubMed Central PMCID: PMC3970515.
Cohen P, Levy JD, Zhang Y, Frontini A, Kolodin DP, Svensson KJ, Lo JC, Zeng X, Ye L, Khandekar MJ, Wu J, Gunawardana SC, Banks AS, Camporez JP, Jurczak MJ, Kajimura S, Piston DW, Mathis D, Cinti S, Shulman GI, Seale P, Spiegelman BM. Ablation of PRDM16 and beige adipose causes metabolic dysfunction and a subcutaneous to visceral fat switch. Cell. 2014 Jan 16;156(1-2):304-16. doi: 10.1016/j.cell.2013.12.021. PubMed PMID: 24439384; PubMed Central PMCID: PMC3922400.
Ye L, Wu J, Cohen P, Kazak L, Khandekar MJ, Jedrychowski MP, Zeng X, Gygi SP, Spiegelman BM. Fat cells directly sense temperature to activate thermogenesis. Proc Natl Acad Sci U S A. 2013 Jul 23;110(30):12480-5. doi: 10.1073/pnas.1310261110. Epub 2013 Jul 1. PubMed PMID: 23818608; PubMed Central PMCID: PMC3725077.
Ye L, Kleiner S, Wu J, Sah R, Gupta RK, Banks AS, Cohen P, Khandekar MJ, Boström P, Mepani RJ, Laznik D, Kamenecka TM, Song X, Liedtke W, Mootha VK, Puigserver P, Griffin PR, Clapham DE, Spiegelman BM. TRPV4 is a regulator of adipose oxidative metabolism, inflammation, and energy homeostasis. Cell. 2012 Sep 28;151(1):96-110. doi: 10.1016/j.cell.2012.08.034. PubMed PMID: 23021218; PubMed Central PMCID: PMC3477522.
Wu J, Boström P, Sparks LM, Ye L, Choi JH, Giang AH, Khandekar M, Virtanen KA, Nuutila P, Schaart G, Huang K, Tu H, van Marken Lichtenbelt WD, Hoeks J, Enerbäck S, Schrauwen P, Spiegelman BM. Beige adipocytes are a distinct type of thermogenic fat cell in mouse and human. Cell. 2012 Jul 20;150(2):366-76. doi: 10.1016/j.cell.2012.05.016. Epub 2012 Jul 12. PubMed PMID: 22796012; PubMed Central PMCID: PMC3402601.
Kleiner S, Mepani RJ, Laznik D, Ye L, Jurczak MJ, Jornayvaz FR, Estall JL, Chatterjee Bhowmick D, Shulman GI, Spiegelman BM. Development of insulin resistance in mice lacking PGC-1α in adipose tissues. Proc Natl Acad Sci U S A. 2012 Jun 12;109(24):9635-40. doi: 10.1073/pnas.1207287109. Epub 2012 May 29. PubMed PMID: 22645355; PubMed Central PMCID: PMC3386123.
Gupta RK, Mepani RJ, Kleiner S, Lo JC, Khandekar MJ, Cohen P, Frontini A, Bhowmick DC, Ye L, Cinti S, Spiegelman BM. Zfp423 expression identifies committed preadipocytes and localizes to adipose endothelial and perivascular cells. Cell Metab. 2012 Feb 8;15(2):230-9. doi: 10.1016/j.cmet.2012.01.010. PubMed PMID: 22326224; PubMed Central PMCID: PMC3366493.
Boström P, Wu J, Jedrychowski MP, Korde A, Ye L, Lo JC, Rasbach KA, Boström EA, Choi JH, Long JZ, Kajimura S, Zingaretti MC, Vind BF, Tu H, Cinti S, Højlund K, Gygi SP, Spiegelman BM. A PGC1-α-dependent myokine that drives brown-fat-like development of white fat and thermogenesis. Nature. 2012 Jan 11;481(7382):463-8. doi: 10.1038/nature10777. PubMed PMID: 22237023; PubMed Central PMCID: PMC3522098.
Wu J, Ruas JL, Estall JL, Rasbach KA, Choi JH, Ye L, Boström P, Tyra HM, Crawford RW, Campbell KP, Rutkowski DT, Kaufman RJ, Spiegelman BM. The unfolded protein response mediates adaptation to exercise in skeletal muscle through a PGC-1α/ATF6α complex. Cell Metab. 2011 Feb 2;13(2):160-9. doi: 10.1016/j.cmet.2011.01.003. PubMed PMID: 21284983; PubMed Central PMCID: PMC3057411.
Gupta RK, Arany Z, Seale P, Mepani RJ, Ye L, Conroe HM, Roby YA, Kulaga H, Reed RR, Spiegelman BM. Transcriptional control of preadipocyte determination by Zfp423. Nature. 2010 Mar 25;464(7288):619-23. doi: 10.1038/nature08816. Epub 2010 Mar 3. PubMed PMID: 20200519; PubMed Central PMCID: PMC2845731.
Han J, Qureshi AA, Prescott J, Guo Q, Ye L, Hunter DJ, De Vivo I. A prospective study of telomere length and the risk of skin cancer. J Invest Dermatol. 2009 Feb;129(2):415-21. doi: 10.1038/jid.2008.238. Epub 2008 Jul 31. PubMed PMID: 18668136; PubMed Central PMCID: PMC2632304.
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