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    PYM1 PYM homolog 1, exon junction complex associated factor [ Canis lupus familiaris (dog) ]

    Gene ID: 481101, updated on 5-Mar-2024

    Summary

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    Official Symbol
    PYM1provided by VGNC
    Official Full Name
    PYM homolog 1, exon junction complex associated factorprovided by VGNC
    Primary source
    VGNC:VGNC:45228
    See related
    Ensembl:ENSCAFG00845005627
    Gene type
    protein coding
    RefSeq status
    MODEL
    Organism
    Canis lupus familiaris (sub-species: familiaris)
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Carnivora; Caniformia; Canidae; Canis
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 10
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    106 current ROS_Cfam_1.0 (GCF_014441545.1) 10 NC_051814.1 (258425..273883, complement)
    106 current Dog10K_Boxer_Tasha (GCF_000002285.5) 10 NC_006592.4 (313556..329002, complement)
    106 current UU_Cfam_GSD_1.0 (GCF_011100685.1) 10 NC_049231.1 (603362..618810, complement)
    106 current UMICH_Zoey_3.1 (GCF_005444595.1) 10 NC_049270.1 (236317..251770, complement)
    106 current UNSW_CanFamBas_1.0 (GCF_013276365.1) 10 NC_049751.1 (479055..494483, complement)

    Chromosome 10 - NC_051814.1Genomic Context describing neighboring genes Neighboring gene matrix metallopeptidase 19 Neighboring gene peptidyl-prolyl cis-trans isomerase D-like Neighboring gene diacylglycerol kinase alpha Neighboring gene premelanosome protein Neighboring gene cyclin dependent kinase 2

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    GeneRIFs: Gene References Into Functions

    General gene information

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    Markers

    Homology

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in exon-exon junction complex disassembly IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    part_of exon-exon junction complex IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    partner of Y14 and mago

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: Canis lupus familiaris Annotation Release 106 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ROS_Cfam_1.0

    Genomic

    1. NC_051814.1 Reference ROS_Cfam_1.0

      Range
      258425..273883 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038678938.1 → XP_038534866.1  partner of Y14 and mago

      UniProtKB/TrEMBL
      A0A8C0LUJ1, A0A8C0NJ10, A0A8I3NC42
      Related
      ENSCAFP00845007794.1, ENSCAFT00845009988.1
      Conserved Domains (1) summary
      pfam09282
      Location:11 → 37
      Mago-bind; Mago binding

    Alternate UMICH_Zoey_3.1

    Genomic

    1. NC_049270.1 Alternate UMICH_Zoey_3.1

      Range
      236317..251770 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038487714.1 → XP_038343642.1  partner of Y14 and mago

      Conserved Domains (1) summary
      pfam09282
      Location:11 → 37
      Mago-bind; Mago binding

    Alternate UNSW_CanFamBas_1.0

    Genomic

    1. NC_049751.1 Alternate UNSW_CanFamBas_1.0

      Range
      479055..494483 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038613573.1 → XP_038469501.1  partner of Y14 and mago

      Conserved Domains (1) summary
      pfam09282
      Location:11 → 37
      Mago-bind; Mago binding

    Alternate UU_Cfam_GSD_1.0

    Genomic

    1. NC_049231.1 Alternate UU_Cfam_GSD_1.0

      Range
      603362..618810 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_038549602.1 → XP_038405530.1  partner of Y14 and mago

      UniProtKB/TrEMBL
      A0A8C0LUJ1, A0A8C0NJ10, A0A8I3NC42
      Conserved Domains (1) summary
      pfam09282
      Location:11 → 37
      Mago-bind; Mago binding

    Alternate Dog10K_Boxer_Tasha Primary Assembly

    Genomic

    1. NC_006592.4 Alternate Dog10K_Boxer_Tasha Primary Assembly

      Range
      313556..329002 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_538222.7 → XP_538222.2  partner of Y14 and mago

      UniProtKB/TrEMBL
      A0A8C0LUJ1, A0A8C0NJ10, A0A8I3NC42
      Conserved Domains (1) summary
      pfam09282
      Location:11 → 37
      Mago-bind; Mago binding
    Nucleotide Protein
    Heading Accession and Version

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