stip1 stress-induced phosphoprotein 1 [Danio rerio (zebrafish)] - Gene

Summary

Official Symbol: stip1provided by ZNC
Official Full Name: stress-induced phosphoprotein 1provided by ZNC
Primary source: ZFIN:ZDB-GENE-041121-17
See related: Ensembl:ENSDARG00000004906 AllianceGenome:ZFIN:ZDB-GENE-041121-17
Gene type: protein coding
RefSeq status: VALIDATED
Organism: Danio rerio
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Ostariophysi; Cypriniformes; Danionidae; Danioninae; Danio
Also known as: fb36h09; fi33b05; zgc:92133; im:6911394; wu:fb36h09; wu:fi33b05
Summary: Predicted to enable Hsp90 protein binding activity. Orthologous to human STIP1 (stress induced phosphoprotein 1). [provided by Alliance of Genome Resources, Apr 2022]
Orthologs: human mouse all
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Genomic context

Location:: chromosome: 5

Exon count:: 14

Annotation release	Status	Assembly	Chr	Location
106	current	GRCz11 (GCF_000002035.6)	5	NC_007116.7 (66807179..66823794, complement)
105	previous assembly	GRCz10 (GCF_000002035.5)	5	NC_007116.6 (66128503..66145118, complement)

Chromosome 5 - NC_007116.7 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Expression

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See details

Project title: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
Description: Sequencing the Zebrafish transcriptome from a range of tissues and developmental stages
BioProject: PRJEB1986
Analysis date: Fri Dec 8 19:48:10 2017

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Submit: New GeneRIF Correction

General gene information

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Markers

fb36h09.x1 (e-PCR)
- UniSTS:190495

AW170824 (e-PCR)
- UniSTS:205864

fb19e11.y1 (e-PCR)
- UniSTS:190263

fb36h09 (e-PCR)
- UniSTS:187121

Gene Ontology Provided by ZFIN

Function	Evidence Code	Pubs
enables Hsp90 protein binding	IBA Inferred from Biological aspect of Ancestor more info
enables molecular_function	ND No biological Data available more info

Process	Evidence Code	Pubs
involved_in biological_process	ND No biological Data available more info

Component	Evidence Code	Pubs
located_in cytoplasm	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: stress-induced-phosphoprotein 1

Names: stress-induced-phosphoprotein 1 (Hsp70/Hsp90-organizing protein)

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001007766.2 → NP_001007767.1 stress-induced-phosphoprotein 1

See identical proteins and their annotated locations for NP_001007767.1

Status: VALIDATED

Source sequence(s)

EB840528, EB963987, EH554191, GW709108, GW713572

UniProtKB/TrEMBL

A0A8M1N3F4, Q5RKM3

Related

ENSDARP00000100503.2, ENSDART00000112488.4

Conserved Domains (6) summary

smart00727
Location:491 → 530

STI1; Heat shock chaperonin-binding motif

smart00028
Location:299 → 327

TPR; Tetratricopeptide repeats

sd00006
Location:363 → 387

TPR; TPR repeat [structural motif]

pfam00515
Location:230 → 257

TPR_1; Tetratricopeptide repeat

pfam13414
Location:7 → 69

TPR_11; TPR repeat

pfam13424
Location:254 → 327

TPR_12; Tetratricopeptide repeat