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    zc3h14.S zinc finger CCCH-type containing 14 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 100158380, updated on 11-Apr-2024

    Summary

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    Official Symbol
    zc3h14.S
    Official Full Name
    zinc finger CCCH-type containing 14 S homeolog
    Primary source
    Xenbase:XB-GENE-983051
    Locus tag
    XELAEV_18041334mg
    See related
    EnsemblRapid:ENSXLAG00005010370
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    zc3h14
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    Genomic context

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    Location:
    chromosome: 8S
    Exon count:
    17
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 8S NC_054386.1 (22114039..22140527, complement)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 8S NC_030739.1 (22033372..22059906, complement)

    Chromosome 8S - NC_054386.1Genomic Context describing neighboring genes Neighboring gene forkhead box N3 S homeolog Neighboring gene echinoderm microtubule associated protein like 5 S homeolog Neighboring gene protein tyrosine phosphatase non-receptor type 21 S homeolog Neighboring gene potassium channel, two pore domain subfamily K, member 10 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. A deep proteomics perspective on CRM1-mediated nuclear export and nucleocytoplasmic partitioning. Kırlı K, et al. Elife, 2015 Dec 17. PMID 26673895, Free PMC Article
    2. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables RNA binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables metal ion binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables poly(A) binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within regulation of mRNA stability IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in cytoplasm IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nuclear speck IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nuclear speck ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		  
    located_in nucleus ISS
    Inferred from Sequence or Structural Similarity
    more info
    		  

    General protein information

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    Preferred Names
    zinc finger CCCH domain-containing protein 14

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001127824.1 → NP_001121296.1  zinc finger CCCH domain-containing protein 14

      See identical proteins and their annotated locations for NP_001121296.1

      Status: PROVISIONAL

      Source sequence(s)
      BC124947
      UniProtKB/Swiss-Prot
      Q08AZ1
      UniProtKB/TrEMBL
      A0A974C1Y0
      Related
      ENSXLAP00005030606.1, ENSXLAT00005031363.1
      Conserved Domains (1) summary
      pfam14608
      Location:571 → 589
      zf-CCCH_2; RNA-binding, Nab2-type zinc finger

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054386.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      22114039..22140527 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018231792.2 → XP_018087281.1  zinc finger CCCH domain-containing protein 14 isoform X2

      UniProtKB/Swiss-Prot
      Q08AZ1
      UniProtKB/TrEMBL
      A0A8J0TKS3, A0A974C1Y0
      Related
      ENSXLAP00005030628.1, ENSXLAT00005031385.1

    2. XM_018231791.2 → XP_018087280.1  zinc finger CCCH domain-containing protein 14 isoform X1

      UniProtKB/Swiss-Prot
      Q08AZ1
      UniProtKB/TrEMBL
      A0A8J0TP36, A0A974C1Y0
      Related
      ENSXLAP00005030622.1, ENSXLAT00005031379.1
    Nucleotide Protein Strain
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q08AZ1.2 GenPept UniProtKB/Swiss-Prot:Q08AZ1

    Gene LinkOut

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