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    sdad1.S SDA1 domain containing 1 S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 398506, updated on 7-Sep-2023

    Summary

    Official Symbol
    sdad1.S
    Official Full Name
    SDA1 domain containing 1 S homeolog
    Primary source
    Xenbase:XB-GENE-1008737
    Locus tag
    XELAEV_18009518mg
    See related
    EnsemblRapid:ENSXLAG00005031610
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    sdad1
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    Genomic context

    Location:
    chromosome: 1S
    Exon count:
    24
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 1S NC_054372.1 (70710179..70749608)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 1S NC_030725.1 (70214308..70253848)

    Chromosome 1S - NC_054372.1Genomic Context describing neighboring genes Neighboring gene C-X-C motif chemokine ligand 10 S homeolog Neighboring gene C-X-C motif chemokine ligand 9 S homeolog Neighboring gene nucleoporin 54kDa S homeolog Neighboring gene scavenger receptor class B member 2 S homeolog

    Genomic regions, transcripts, and products

    Interactions

    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Clone Names

    • MGC132226

    Gene Ontology Provided by Xenbase

    Process Evidence Code Pubs
    acts_upstream_of_or_within protein transport IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within ribosomal large subunit biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within ribosomal large subunit export from nucleus IEA
    Inferred from Electronic Annotation
    more info
     
    acts_upstream_of_or_within ribosome biogenesis IEA
    Inferred from Electronic Annotation
    more info
     
    Component Evidence Code Pubs
    located_in nucleolus IEA
    Inferred from Electronic Annotation
    more info
     
    located_in nucleolus ISS
    Inferred from Sequence or Structural Similarity
    more info
     
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
     

    General protein information

    Preferred Names
    protein SDA1 homolog
    Names
    SDA1 domain-containing protein 1

    NCBI Reference Sequences (RefSeq)

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001089023.1NP_001082492.1  protein SDA1 homolog

      See identical proteins and their annotated locations for NP_001082492.1

      Status: PROVISIONAL

      Source sequence(s)
      BC108827
      UniProtKB/Swiss-Prot
      Q2VPG3, Q4V844, Q6IP54, Q7ZXR8
      UniProtKB/TrEMBL
      A0A974I136
      Related
      ENSXLAP00005094906.1, ENSXLAT00005096618.1
      Conserved Domains (2) summary
      pfam05285
      Location:409685
      SDA1; SDA1
      pfam08158
      Location:62111
      NUC130_3NT; NUC130/3NT domain

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054372.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      70710179..70749608
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_018234459.2XP_018089948.1  protein SDA1 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q2VPG3, Q4V844, Q6IP54, Q7ZXR8
      UniProtKB/TrEMBL
      A0A974I136
      Related
      ENSXLAP00005095123.1, ENSXLAT00005096854.1
    2. XM_018234462.2XP_018089951.1  protein SDA1 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q2VPG3, Q4V844, Q6IP54, Q7ZXR8
      UniProtKB/TrEMBL
      A0A974I136
      Related
      ENSXLAP00005095262.1, ENSXLAT00005096992.1
    3. XM_018234468.2XP_018089957.1  protein SDA1 homolog isoform X1

      UniProtKB/Swiss-Prot
      Q2VPG3, Q4V844, Q6IP54, Q7ZXR8
      UniProtKB/TrEMBL
      A0A974I136