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    sema3c.S semaphorin 3C S homeolog [ Xenopus laevis (African clawed frog) ]

    Gene ID: 495257, updated on 11-Apr-2024

    Summary

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    Official Symbol
    sema3c.S
    Official Full Name
    semaphorin 3C S homeolog
    Primary source
    Xenbase:XB-GENE-1014805
    Locus tag
    XELAEV_18020956mg
    See related
    EnsemblRapid:ENSXLAG00005007929
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Xenopus laevis
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
    Also known as
    sema3c
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    Genomic context

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    Location:
    chromosome: 3S
    Exon count:
    18
    Annotation release Status Assembly Chr Location
    101 current Xenopus_laevis_v10.1 (GCF_017654675.1) 3S NC_054376.1 (71778531..71846680)
    100 previous assembly Xenopus_laevis_v2 (GCF_001663975.1) 3S NC_030729.1 (70365261..70433491)

    Chromosome 3S - NC_054376.1Genomic Context describing neighboring genes Neighboring gene calcium channel, voltage-dependent, alpha 2/delta subunit 1 S homeolog Neighboring gene hepatocyte growth factor (hepapoietin A; scatter factor) S homeolog Neighboring gene CD36 molecule S homeolog Neighboring gene guanine nucleotide binding protein (G protein), alpha inhibiting activity polypeptide 1 S homeolog

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Genetic and genomic tools for Xenopus research: The NIH Xenopus initiative. Klein SL, et al. Dev Dyn, 2002 Dec. PMID 12454917
    2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Gene Ontology Provided by Xenbase

    Function Evidence Code Pubs
    enables chemorepellent activity IEA
    Inferred from Electronic Annotation
    more info
    		  
    enables semaphorin receptor binding IEA
    Inferred from Electronic Annotation
    more info
    		  
    Process Evidence Code Pubs
    acts_upstream_of_or_within axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within negative chemotaxis IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within negative regulation of axon extension involved in axon guidance IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within neural crest cell migration IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within positive regulation of cell migration IEA
    Inferred from Electronic Annotation
    more info
    		  
    acts_upstream_of_or_within semaphorin-plexin signaling pathway IEA
    Inferred from Electronic Annotation
    more info
    		  
    Component Evidence Code Pubs
    located_in extracellular space IEA
    Inferred from Electronic Annotation
    more info
    		  

    General protein information

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    Preferred Names
    semaphorin 3C S homeolog
    Names
    sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3C S homeolog

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001094933.1 → NP_001088402.1  semaphorin 3C S homeolog precursor

      See identical proteins and their annotated locations for NP_001088402.1

      Status: PROVISIONAL

      Source sequence(s)
      BC084294
      UniProtKB/TrEMBL
      A0A974HRG0, Q5XGY3
      Related
      ENSXLAP00005022822.1, ENSXLAT00005023524.1
      Conserved Domains (4) summary
      cd05871
      Location:573 → 662
      Ig_Semaphorin_classIII; Immunoglobulin (Ig)-like domain of class III semaphorin
      cd11251
      Location:43 → 512
      Sema_3C; The Sema domain, a protein interacting module, of semaphorin 3C (Sema3C)
      smart00410
      Location:577 → 659
      IG_like; Immunoglobulin like
      smart00423
      Location:511 → 548
      PSI; domain found in Plexins, Semaphorins and Integrins

    RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...Open this link in a new tab

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference Xenopus_laevis_v10.1 Primary Assembly

    Genomic

    1. NC_054376.1 Reference Xenopus_laevis_v10.1 Primary Assembly

      Range
      71778531..71846680
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein Strain
    Heading Accession and Version

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