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    YJL114W gag protein [ Saccharomyces cerevisiae S288C ]

    Gene ID: 853329, updated on 6-Oct-2023

    Summary

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    Gene symbol
    YJL114W
    Gene description
    gag protein
    Primary source
    SGD:S000003650
    Locus tag
    YJL114W
    See related
    AllianceGenome:SGD:S000003650
    Gene type
    protein coding
    RefSeq status
    REVIEWED
    Organism
    Saccharomyces cerevisiae S288C (strain: S288C)
    Lineage
    Eukaryota; Fungi; Dikarya; Ascomycota; Saccharomycotina; Saccharomycetes; Saccharomycetales; Saccharomycetaceae; Saccharomyces
    Summary
    Predicted to enable RNA binding activity. Predicted to be involved in transposition, RNA-mediated. Predicted to be located in retrotransposon nucleocapsid. [provided by Alliance of Genome Resources, Apr 2022]
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    Genomic context

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    Location:
    chromosome: X
    Exon count:
    1
    Sequence:
    Chromosome: X; NC_001142.9 (197915..198595)

    Chromosome X - NC_001142.9Genomic Context describing neighboring genes Neighboring gene nucleosome assembly factor ASF1 Neighboring gene tRNA-Ala Neighboring gene gag-pol fusion protein Neighboring gene tRNA-Asp

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_001142.9

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Molecular analysis of the yeast Ty4 element: homology with Ty1, copia, and plant retrotransposons. Stucka R, et al. Gene, 1992 Dec 1. PMID 1333437
    2. A computationally directed screen identifying interacting coiled coils from Saccharomyces cerevisiae. Newman JR, et al. Proc Natl Acad Sci U S A, 2000 Nov 21. PMID 11087867, Free PMC Article
    3. Ty1 gag enhances the stability and nuclear export of Ty1 mRNA. Checkley MA, et al. Traffic, 2013 Jan. PMID 22998189, Free PMC Article
    4. Happy together: the life and times of Ty retrotransposons and their hosts. Lesage P, et al. Cytogenet Genome Res, 2005. PMID 16093660
    5. Evolutionary genomics of transposable elements in Saccharomyces cerevisiae. Carr M, et al. PLoS One, 2012. PMID 23226439, Free PMC Article

    See all (13) citations in PubMed

    GeneRIFs: Gene References Into Functions

    Interactions

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    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

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    Homology

    Gene Ontology Provided by SGD

    Function Evidence Code Pubs
    enables RNA binding ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    enables zinc ion binding RCA
    inferred from Reviewed Computational Analysis
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in retrotransposition ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in retrotransposon nucleocapsid ISS
    Inferred from Sequence or Structural Similarity
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    gag protein
    NP_012422.2
    • Retrotransposon TYA Gag gene co-transcribed with TYB Pol; translated as TYA or TYA-TYB polyprotein; Gag is a nucleocapsid protein that is the structural constituent of virus-like particles (VLPs); similar to retroviral Gag

    NCBI Reference Sequences (RefSeq)

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    Genome Annotation

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference assembly

    Genomic

    1. NC_001142.9 Reference assembly

      Range
      197915..198595
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. NM_001181547.2 → NP_012422.2  TPA: gag protein [Saccharomyces cerevisiae S288C]

      See identical proteins and their annotated locations for NP_012422.2

      Status: REVIEWED

      UniProtKB/TrEMBL
      A0A8H4BYH7
    Nucleotide Protein
    Heading Accession and Version

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