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    SSBP4 single stranded DNA binding protein 4 [ Bos taurus (cattle) ]

    Gene ID: 508156, updated on 3-Apr-2024

    Summary

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    Official Symbol
    SSBP4provided by VGNC
    Official Full Name
    single stranded DNA binding protein 4provided by VGNC
    Primary source
    VGNC:VGNC:50021
    See related
    Ensembl:ENSBTAG00000003947
    Gene type
    protein coding
    RefSeq status
    PROVISIONAL
    Organism
    Bos taurus
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Ruminantia; Pecora; Bovidae; Bovinae; Bos
    Orthologs
    human mouse all
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    Genomic context

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    Location:
    chromosome: 7
    Exon count:
    21
    Annotation release Status Assembly Chr Location
    RS_2023_09 current ARS-UCD2.0 (GCF_002263795.3) 7 NC_037334.1 (4741033..4757679, complement)

    Chromosome 7 - NC_037334.1Genomic Context describing neighboring genes Neighboring gene elongation factor for RNA polymerase II Neighboring gene uncharacterized LOC101908182 Neighboring gene inositol-3-phosphate synthase 1 Neighboring gene leucine rich repeat containing 25 Neighboring gene growth differentiation factor 15

    Genomic regions, transcripts, and products

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    Genomic Sequence:
    NC_037334.1 Chromosome 7 Reference ARS-UCD2.0 Primary Assembly

    Go to nucleotide: Graphics FASTA GenBank

    Bibliography

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    Related articles in PubMed

    1. Sequence evaluation of four pooled-tissue normalized bovine cDNA libraries and construction of a gene index for cattle. Smith TP, et al. Genome Res, 2001 Apr. PMID 11282978, Free PMC Article
    2. Characterization of 954 bovine full-CDS cDNA sequences. Harhay GP, et al. BMC Genomics, 2005 Nov 23. PMID 16305752, Free PMC Article
    3. A whole-genome assembly of the domestic cow, Bos taurus. Zimin AV, et al. Genome Biol, 2009. PMID 19393038, Free PMC Article
    4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    General gene information

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    Homology

    Clone Names

    • MGC128808

    Gene Ontology Provided by RefSeq

    Function Evidence Code Pubs
    enables protein binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    enables single-stranded DNA binding IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Process Evidence Code Pubs
    involved_in positive regulation of transcription by RNA polymerase II IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 
    Component Evidence Code Pubs
    located_in nucleus IEA
    Inferred from Electronic Annotation
    more info
    		 PubMed 

    General protein information

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    Preferred Names
    single-stranded DNA-binding protein 4

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_001035273.2 → NP_001030350.1  single-stranded DNA-binding protein 4

      See identical proteins and their annotated locations for NP_001030350.1

      Status: PROVISIONAL

      Source sequence(s)
      BC107552
      UniProtKB/TrEMBL
      A0A3Q1MBJ5, Q3B7L7
      Related
      ENSBTAP00000070090.1, ENSBTAT00000080002.2
      Conserved Domains (2) summary
      smart00667
      Location:18 → 44
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82 → 338
      SSDP; Single-stranded DNA binding protein, SSDP

    RefSeqs of Annotated Genomes: GCF_002263795.3-RS_2023_09

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference ARS-UCD2.0 Primary Assembly

    Genomic

    1. NC_037334.1 Reference ARS-UCD2.0 Primary Assembly

      Range
      4741033..4757679 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_059888028.1 → XP_059744011.1  single-stranded DNA-binding protein 4 isoform X6

    2. XM_059888033.1 → XP_059744016.1  single-stranded DNA-binding protein 4 isoform X17

    3. XM_059888029.1 → XP_059744012.1  single-stranded DNA-binding protein 4 isoform X13

    4. XM_024994022.2 → XP_024849790.1  single-stranded DNA-binding protein 4 isoform X11

      UniProtKB/TrEMBL
      A0A3Q1MBJ5
      Conserved Domains (2) summary
      smart00667
      Location:18 → 44
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82 → 365
      SSDP; Single-stranded DNA binding protein, SSDP

    5. XM_024994026.2 → XP_024849794.1  single-stranded DNA-binding protein 4 isoform X9

      UniProtKB/TrEMBL
      A0A3Q1MLD3
      Conserved Domains (2) summary
      smart00667
      Location:18 → 44
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82 → 387
      SSDP; Single-stranded DNA binding protein, SSDP

    6. XM_024994016.2 → XP_024849784.1  single-stranded DNA-binding protein 4 isoform X7

      UniProtKB/TrEMBL
      A0A3Q1MLD3
      Conserved Domains (1) summary
      pfam04503
      Location:151 → 407
      SSDP; Single-stranded DNA binding protein, SSDP

    7. XM_059888027.1 → XP_059744010.1  single-stranded DNA-binding protein 4 isoform X3

    8. XM_024994013.2 → XP_024849781.1  single-stranded DNA-binding protein 4 isoform X5

      UniProtKB/TrEMBL
      A0A3Q1MLD3
      Conserved Domains (1) summary
      pfam04503
      Location:151 → 429
      SSDP; Single-stranded DNA binding protein, SSDP

    9. XM_024994008.2 → XP_024849776.1  single-stranded DNA-binding protein 4 isoform X1

      Conserved Domains (1) summary
      pfam04503
      Location:151 → 456
      SSDP; Single-stranded DNA binding protein, SSDP

    10. XM_059888031.1 → XP_059744014.1  single-stranded DNA-binding protein 4 isoform X15

    11. XM_059888034.1 → XP_059744017.1  single-stranded DNA-binding protein 4 isoform X18

    12. XM_059888030.1 → XP_059744013.1  single-stranded DNA-binding protein 4 isoform X14

    13. XM_024994023.2 → XP_024849791.1  single-stranded DNA-binding protein 4 isoform X12

      UniProtKB/TrEMBL
      Q0V8A5
      Conserved Domains (2) summary
      smart00667
      Location:18 → 44
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82 → 338
      SSDP; Single-stranded DNA binding protein, SSDP

    14. XM_024994018.2 → XP_024849786.1  single-stranded DNA-binding protein 4 isoform X8

      UniProtKB/TrEMBL
      Q0V8A5
      Conserved Domains (2) summary
      smart00667
      Location:18 → 44
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82 → 365
      SSDP; Single-stranded DNA binding protein, SSDP

    15. XM_024994019.2 → XP_024849787.1  single-stranded DNA-binding protein 4 isoform X10

      UniProtKB/TrEMBL
      A0A3Q1MLD3
      Conserved Domains (2) summary
      smart00667
      Location:18 → 44
      LisH; Lissencephaly type-1-like homology motif
      pfam04503
      Location:82 → 360
      SSDP; Single-stranded DNA binding protein, SSDP

    16. XM_024994012.2 → XP_024849780.1  single-stranded DNA-binding protein 4 isoform X4

      Conserved Domains (1) summary
      pfam04503
      Location:151 → 407
      SSDP; Single-stranded DNA binding protein, SSDP

    17. XM_024994010.2 → XP_024849778.1  single-stranded DNA-binding protein 4 isoform X2

      Conserved Domains (1) summary
      pfam04503
      Location:151 → 429
      SSDP; Single-stranded DNA binding protein, SSDP

    18. XM_059888032.1 → XP_059744015.1  single-stranded DNA-binding protein 4 isoform X16

    Nucleotide Protein Strain
    Heading Accession and Version

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