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    LINC02260 long intergenic non-protein coding RNA 2260 [ Homo sapiens (human) ]

    Gene ID: 339978, updated on 10-Oct-2023

    Summary

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    Official Symbol
    LINC02260provided by HGNC
    Official Full Name
    long intergenic non-protein coding RNA 2260provided by HGNC
    Primary source
    HGNC:HGNC:27956
    See related
    Ensembl:ENSG00000250456 AllianceGenome:HGNC:27956
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Restricted expression toward spleen (RPKM 2.7) See more
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    Genomic context

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    Location:
    4q12
    Exon count:
    2
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 4 NC_000004.12 (54603211..54607131, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 4 NC_060928.1 (58091981..58095902, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 4 NC_000004.11 (55469378..55473298, complement)

    Chromosome 4 - NC_000004.12Genomic Context describing neighboring genes Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr4:55099490-55100040 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21572 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:55100592-55100699 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:55122608-55122834 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:55144323-55144846 Neighboring gene platelet derived growth factor receptor alpha Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr4:55147260-55148459 Neighboring gene ReSE screen-validated silencer GRCh37_chr4:55161059-55161251 Neighboring gene NANOG-H3K27ac hESC enhancer GRCh37_chr4:55190909-55191566 Neighboring gene H3K27ac hESC enhancer GRCh37_chr4:55191567-55192224 Neighboring gene long intergenic non-protein coding RNA 2283 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr4:55405507-55406008 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1578 Neighboring gene CRISPRi-validated cis-regulatory element chr4.1581 Neighboring gene Sharpr-MPRA regulatory region 7950 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 21573 Neighboring gene KIT proto-oncogene, receptor tyrosine kinase Neighboring gene uncharacterized LOC105377657 Neighboring gene NANOG hESC enhancer GRCh37_chr4:55644199-55644700 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr4:55684653-55685219

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    Related articles in PubMed

    1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. Strausberg RL, et al. Proc Natl Acad Sci U S A, 2002 Dec 24. PMID 12477932, Free PMC Article

    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_134657.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      BC044946
      Related
      ENST00000508484.1

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000004.12 Reference GRCh38.p14 Primary Assembly

      Range
      54603211..54607131 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060928.1 Alternate T2T-CHM13v2.0

      Range
      58091981..58095902 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

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