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    LOC105375158 uncharacterized LOC105375158 [ Homo sapiens (human) ]

    Gene ID: 105375158, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105375158
    Gene description
    uncharacterized LOC105375158
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    7p21.3
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 7 NC_000007.14 (12931678..13061997)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 7 NC_060931.1 (13057994..13193243)

    Chromosome 7 - NC_000007.14Genomic Context describing neighboring genes Neighboring gene RN7SK pseudogene 228 Neighboring gene Sharpr-MPRA regulatory region 14677 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr7:12963056-12964255 Neighboring gene Sharpr-MPRA regulatory region 12730 Neighboring gene Sharpr-MPRA regulatory region 6845 Neighboring gene RBMX2 pseudogene 4 Neighboring gene MPRA-validated peak6391 silencer Neighboring gene CDK7 strongly-dependent group 2 enhancer GRCh37_chr7:13056242-13057441 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25667 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 25666 Neighboring gene MPRA-validated peak6392 silencer Neighboring gene NANOG hESC enhancer GRCh37_chr7:13279910-13280411 Neighboring gene uncharacterized LOC107986770 Neighboring gene NANOG hESC enhancer GRCh37_chr7:13346662-13347177 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr7:13361588-13362292 Neighboring gene VISTA enhancer hs749 Neighboring gene VISTA enhancer hs550 Neighboring gene MPRA-validated peak6396 silencer Neighboring gene MPRA-validated peak6397 silencer Neighboring gene uncharacterized LOC105375161

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000007.14 Reference GRCh38.p14 Primary Assembly

      Range
      12931678..13061997
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_927044.3 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060931.1 Alternate T2T-CHM13v2.0

      Range
      13057994..13193243
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007078262.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases