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    LOC105374973 uncharacterized LOC105374973 [ Homo sapiens (human) ]

    Gene ID: 105374973, updated on 10-Oct-2023

    Summary

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    Gene symbol
    LOC105374973
    Gene description
    uncharacterized LOC105374973
    Gene type
    ncRNA
    RefSeq status
    MODEL
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Expression
    Low expression observed in reference dataset See more
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    Genomic context

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    Location:
    6p22.3
    Exon count:
    5
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 6 NC_000006.12 (22644020..22660022)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 6 NC_060930.1 (22516695..22534883)

    Chromosome 6 - NC_000006.12Genomic Context describing neighboring genes Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:22313984-22314538 Neighboring gene uncharacterized LOC105374971 Neighboring gene prolactin Neighboring gene MED14-independent group 3 enhancer GRCh37_chr6:22441843-22443042 Neighboring gene H3K27ac hESC enhancer GRCh37_chr6:22443327-22443827 Neighboring gene MPRA-validated peak5731 silencer Neighboring gene HDGF like 1 Neighboring gene uncharacterized LOC102724736 Neighboring gene long intergenic non-protein coding RNA 3005 Neighboring gene OCT4-NANOG-H3K27ac hESC enhancer GRCh37_chr6:22878206-22879013 Neighboring gene OCT4-NANOG hESC enhancer GRCh37_chr6:22896808-22897410 Neighboring gene uncharacterized LOC105374974 Neighboring gene ribosomal protein L6 pseudogene 18

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See studies and variants in dbVar

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000006.12 Reference GRCh38.p14 Primary Assembly

      Range
      22644020..22660022
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007059495.1 RNA Sequence

    2. XR_007059497.1 RNA Sequence

    3. XR_001744026.2 RNA Sequence

    4. XR_007059496.1 RNA Sequence

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060930.1 Alternate T2T-CHM13v2.0

      Range
      22516695..22534883
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    RNA

    1. XR_007076619.1 RNA Sequence

    2. XR_007076622.1 RNA Sequence

    3. XR_007076621.1 RNA Sequence

    4. XR_007076620.1 RNA Sequence

    Nucleotide Protein
    Heading Accession and Version

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