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    PIK3R5-DT PIK3R5 divergent transcript [ Homo sapiens (human) ]

    Gene ID: 101928235, updated on 10-Oct-2023

    Summary

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    Official Symbol
    PIK3R5-DTprovided by HGNC
    Official Full Name
    PIK3R5 divergent transcriptprovided by HGNC
    Primary source
    HGNC:HGNC:55321
    See related
    AllianceGenome:HGNC:55321
    Gene type
    ncRNA
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    CTB-41I6.1; CTB-41I6.2
    Expression
    Broad expression in bone marrow (RPKM 2.1), testis (RPKM 1.5) and 14 other tissues See more
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    Genomic context

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    Location:
    17p13.1
    Exon count:
    3
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 17 NC_000017.11 (8965847..8976986)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 17 NC_060941.1 (8873012..8884147)

    Chromosome 17 - NC_000017.11Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC124903920 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11716 Neighboring gene uncharacterized LOC124903921 Neighboring gene phosphoinositide-3-kinase regulatory subunit 5 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8188 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8189 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8190 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11717 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11718 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:8857999-8858500 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:8858501-8859000 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8191 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8192 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11719 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11720 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11721 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8193 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8194 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:8907139-8907768 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 11722 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:8924225-8924768 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 8195 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:8936035-8936534 Neighboring gene netrin 1 Neighboring gene H3K27ac-H3K4me1 hESC enhancers GRCh37_chr17:8954033-8954690 and GRCh37_chr17:8954691-8955350 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:8955351-8956008 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:8956741-8957362 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:8957363-8957982 Neighboring gene OCT4-NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:8957983-8958603 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:8990973-8991474 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:8991475-8991974 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:9041579-9042287 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:9054043-9054886 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:9058975-9059476 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:9059477-9059976 Neighboring gene uncharacterized LOC101928266 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:9083413-9083914 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:9086141-9086640 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:9099203-9100124 Neighboring gene BRD4-independent group 4 enhancer GRCh37_chr17:9124521-9125720 Neighboring gene NANOG-H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:9128413-9128964 Neighboring gene H3K27ac-H3K4me1 hESC enhancer GRCh37_chr17:9129517-9130068 Neighboring gene uncharacterized LOC124903923 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:9130069-9130619 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:9131120-9131620 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr17:9133199-9133700

    Genomic regions, transcripts, and products

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    Go to nucleotide: Graphics FASTA GenBank

    Expression

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    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

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    GeneRIFs: Gene References Into Functions

    Phenotypes

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    Review eQTL and phenotype association data in this region using PheGenI

    Variation

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    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh38)

    Genotypes

    NCBI Reference Sequences (RefSeq)

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    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    RNA

    1. NR_184077.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002091

    2. NR_184078.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002091

    3. NR_184079.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002091

    4. NR_184080.1 RNA Sequence

      Status: VALIDATED

      Source sequence(s)
      AC002091

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000017.11 Reference GRCh38.p14 Primary Assembly

      Range
      8965847..8976986
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060941.1 Alternate T2T-CHM13v2.0

      Range
      8873012..8884147
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)
    Nucleotide Protein
    Heading Accession and Version

    Gene LinkOut

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    Molecular Biology Databases