U.S. flag

An official website of the United States government

Format

Send to:

Choose Destination
    • Showing Current items.

    CMBL carboxymethylenebutenolidase homolog [ Homo sapiens (human) ]

    Gene ID: 134147, updated on 7-Apr-2024

    Summary

    Go to the top of the page Help
    Official Symbol
    CMBLprovided by HGNC
    Official Full Name
    carboxymethylenebutenolidase homologprovided by HGNC
    Primary source
    HGNC:HGNC:25090
    See related
    Ensembl:ENSG00000164237 MIM:613379; AllianceGenome:HGNC:25090
    Gene type
    protein coding
    RefSeq status
    VALIDATED
    Organism
    Homo sapiens
    Lineage
    Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo
    Also known as
    JS-1
    Summary
    CMBL (EC 3.1.1.45) is a cysteine hydrolase of the dienelactone hydrolase family that is highly expressed in liver cytosol. CMBL preferentially cleaves cyclic esters, and it activates medoxomil-ester prodrugs in which the medoxomil moiety is linked to an oxygen atom (Ishizuka et al., 2010 [PubMed 20177059]).[supplied by OMIM, Apr 2010]
    Expression
    Biased expression in kidney (RPKM 81.9), duodenum (RPKM 43.0) and 10 other tissues See more
    Orthologs
    mouse all
    NEW
    Try the new Gene table
    Try the new Transcript table

    Genomic context

    Go to the top of the page Help
    Location:
    5p15.2
    Exon count:
    8
    Annotation release Status Assembly Chr Location
    RS_2023_10 current GRCh38.p14 (GCF_000001405.40) 5 NC_000005.10 (10277595..10307902, complement)
    RS_2023_10 current T2T-CHM13v2.0 (GCF_009914755.1) 5 NC_060929.1 (10216896..10247204, complement)
    105.20220307 previous assembly GRCh37.p13 (GCF_000001405.25) 5 NC_000005.9 (10277707..10308014, complement)

    Chromosome 5 - NC_000005.10Genomic Context describing neighboring genes Neighboring gene ATP synthase c subunit lysine N-methyltransferase Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15913 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15914 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15915 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15916 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:10251320-10251542 Neighboring gene chaperonin containing TCP1 subunit 5 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15917 Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22352 Neighboring gene ReSE screen-validated silencer GRCh37_chr5:10300268-10300444 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:10307292-10307792 Neighboring gene CRISPRi-validated cis-regulatory element chr5.702 Neighboring gene Sharpr-MPRA regulatory region 12783 Neighboring gene uncharacterized LOC105374651 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15918 Neighboring gene H3K4me1 hESC enhancer GRCh37_chr5:10333367-10334122 Neighboring gene MARCHF6 divergent transcript Neighboring gene ATAC-STARR-seq lymphoblastoid active region 22353 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15919 Neighboring gene ATAC-STARR-seq lymphoblastoid silent region 15920 Neighboring gene membrane associated ring-CH-type finger 6

    Genomic regions, transcripts, and products

    Go to the top of the page Help

    Go to nucleotide: Graphics FASTA GenBank

    Expression

    Go to the top of the page Help
    • Project title: HPA RNA-seq normal tissues
    • Description: RNA-seq was performed of tissue samples from 95 human individuals representing 27 different tissues in order to determine tissue-specificity of all protein-coding genes
    • BioProject: PRJEB4337
    • Publication: PMID 24309898
    • Analysis date: Wed Apr 4 07:08:55 2018

    Bibliography

    Go to the top of the pageHelp

    Related articles in PubMed

    1. Human carboxymethylenebutenolidase as a bioactivating hydrolase of olmesartan medoxomil in liver and intestine. Ishizuka T, et al. J Biol Chem, 2010 Apr 16. PMID 20177059, Free PMC Article
    2. Nucleotide sequence and expression of clcD, a plasmid-borne dienelactone hydrolase gene from Pseudomonas sp. strain B13. Frantz B, et al. J Bacteriol, 1987 Feb. PMID 3804974, Free PMC Article
    3. Transforming capacity of two novel genes JS-1 and JS-2 located in chromosome 5p and their overexpression in human esophageal squamous cell carcinoma. Fatima S, et al. Int J Mol Med, 2006 Jan. PMID 16328025
    4. Glutamine Triggers Acetylation-Dependent Degradation of Glutamine Synthetase via the Thalidomide Receptor Cereblon. Nguyen TV, et al. Mol Cell, 2016 Mar 17. PMID 26990986, Free PMC Article
    5. Proteomic dissection of cell type-specific H2AX-interacting protein complex associated with hepatocellular carcinoma. Yang X, et al. J Proteome Res, 2010 Mar 5. PMID 20000738, Free PMC Article

    See all (35) citations in PubMed

    GeneRIFs: Gene References Into Functions

    What's a GeneRIF?
    1. p53-responsive CMBL reprograms glucose metabolism and suppresses cancer development by destabilizing phosphofructokinase PFKP.
      Title: p53-responsive CMBL reprograms glucose metabolism and suppresses cancer development by destabilizing phosphofructokinase PFKP.
    2. By comparing the enzyme kinetics and chemical inhibition properties between the recombinant protein and tissue preparations, CMBL was shown to be the primary olmesartan medoxomil bioactivating enzyme in the liver and intestine.
      Title: Human carboxymethylenebutenolidase as a bioactivating hydrolase of olmesartan medoxomil in liver and intestine.
    Submit: New GeneRIF Correction

    Phenotypes

    Go to the top of the page Help

    Find tests for this gene in the NIH Genetic Testing Registry (GTR)

    Review eQTL and phenotype association data in this region using PheGenI

    Variation

    Go to the top of the page Help

    See variants in ClinVar

    See studies and variants in dbVar

    See Variation Viewer (GRCh37.p13)

    See Variation Viewer (GRCh38)

    Genotypes

    Pathways from PubChem

    Go to the top of the page

    Interactions

    Go to the top of the page Help
    Products Interactant Other Gene Complex Source Pubs Description

    General gene information

    Go to the top of the page Help

    Markers

    Homology

    Clone Names

    • FLJ23617

    Gene Ontology Provided by GOA

    Function Evidence Code Pubs
    enables hydrolase activity TAS
    Traceable Author Statement
    more info
    		  
    Process Evidence Code Pubs
    involved_in xenobiotic metabolic process TAS
    Traceable Author Statement
    more info
    		  
    Component Evidence Code Pubs
    located_in cytosol TAS
    Traceable Author Statement
    more info
    		  
    located_in extracellular exosome HDA PubMed 

    General protein information

    Go to the top of the page Help
    Preferred Names
    carboxymethylenebutenolidase homolog
    Names
    carboxymethylenebutenolidase homolog (Pseudomonas)
    carboxymethylenebutenolidase-like (Pseudomonas)
    NP_620164.1
    XP_047272670.1
    XP_047272671.1
    XP_047272672.1
    XP_047272673.1
    XP_047272674.1
    XP_054207588.1
    XP_054207589.1
    XP_054207590.1
    XP_054207591.1

    NCBI Reference Sequences (RefSeq)

    Go to the top of the page Help

    NEW Try the new Transcript table

    RefSeqs maintained independently of Annotated Genomes

    These reference sequences exist independently of genome builds. Explain

    These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

    mRNA and Protein(s)

    1. NM_138809.4 → NP_620164.1  carboxymethylenebutenolidase homolog

      See identical proteins and their annotated locations for NP_620164.1

      Status: VALIDATED

      Source sequence(s)
      AC012640, BC001573, DA628493
      Consensus CDS
      CCDS3878.1
      UniProtKB/Swiss-Prot
      D3DTC7, Q8TED6, Q96DG6
      UniProtKB/TrEMBL
      B2RD36
      Related
      ENSP00000296658.3, ENST00000296658.4
      Conserved Domains (1) summary
      COG0412
      Location:30 → 245
      DLH; Dienelactone hydrolase [Secondary metabolites biosynthesis, transport and catabolism]

    RefSeqs of Annotated Genomes: GCF_000001405.40-RS_2023_10

    The following sections contain reference sequences that belong to a specific genome build. Explain

    Reference GRCh38.p14 Primary Assembly

    Genomic

    1. NC_000005.10 Reference GRCh38.p14 Primary Assembly

      Range
      10277595..10307902 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_047416714.1 → XP_047272670.1  carboxymethylenebutenolidase homolog isoform X1

      UniProtKB/Swiss-Prot
      D3DTC7, Q8TED6, Q96DG6

    2. XM_047416716.1 → XP_047272672.1  carboxymethylenebutenolidase homolog isoform X1

      UniProtKB/Swiss-Prot
      D3DTC7, Q8TED6, Q96DG6

    3. XM_047416717.1 → XP_047272673.1  carboxymethylenebutenolidase homolog isoform X1

      UniProtKB/Swiss-Prot
      D3DTC7, Q8TED6, Q96DG6

    4. XM_047416715.1 → XP_047272671.1  carboxymethylenebutenolidase homolog isoform X1

      UniProtKB/Swiss-Prot
      D3DTC7, Q8TED6, Q96DG6

    5. XM_047416718.1 → XP_047272674.1  carboxymethylenebutenolidase homolog isoform X1

      UniProtKB/Swiss-Prot
      D3DTC7, Q8TED6, Q96DG6

    Alternate T2T-CHM13v2.0

    Genomic

    1. NC_060929.1 Alternate T2T-CHM13v2.0

      Range
      10216896..10247204 complement
      Download
      GenBank, FASTA, Sequence Viewer (Graphics)

    mRNA and Protein(s)

    1. XM_054351613.1 → XP_054207588.1  carboxymethylenebutenolidase homolog isoform X1

      UniProtKB/Swiss-Prot
      D3DTC7, Q8TED6, Q96DG6

    2. XM_054351616.1 → XP_054207591.1  carboxymethylenebutenolidase homolog isoform X1

      UniProtKB/Swiss-Prot
      D3DTC7, Q8TED6, Q96DG6

    3. XM_054351615.1 → XP_054207590.1  carboxymethylenebutenolidase homolog isoform X1

      UniProtKB/Swiss-Prot
      D3DTC7, Q8TED6, Q96DG6

    4. XM_054351614.1 → XP_054207589.1  carboxymethylenebutenolidase homolog isoform X1

      UniProtKB/Swiss-Prot
      D3DTC7, Q8TED6, Q96DG6
    Nucleotide Protein
    Heading Accession and Version
    Protein Accession Links
    GenPept Link UniProtKB Link
    Q96DG6.1 GenPept UniProtKB/Swiss-Prot:Q96DG6

    Gene LinkOut

    The following LinkOut resources are supplied by external providers. These providers are responsible for maintaining the links.

    Chemical Information
    Molecular Biology Databases
    Research Materials
    Tools
    Miscellaneous