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Page 1
Two Intercalation Mechanisms of Oxazole Yellow Dimer (YOYO-1) into DNA.
Kucharska K, Pilz M, Bielec K, Kalwarczyk T, Kuźma P, Hołyst R. Kucharska K, et al. Molecules. 2021 Jun 19;26(12):3748. doi: 10.3390/molecules26123748. Molecules. 2021. PMID: 34205435 Free PMC article.
The oxazole yellow dye, YOYO-1 (a symmetric homodimer), is a commonly used molecule for staining DNA. ...
The oxazole yellow dye, YOYO-1 (a symmetric homodimer), is a commonly used molecule for staining DNA. ...
Oxazole yellow dye interactions with short DNA oligomers of homogeneous base composition and their hybrids.
Simon LD, Abramo KH, Sell JK, McGown LB. Simon LD, et al. Biospectroscopy. 1998;4(1):17-25. doi: 10.1002/(sici)1520-6343(1998)4:1<17::aid-bspy2>3.0.co;2-p. Biospectroscopy. 1998. PMID: 9547011
Interactions between short single-stranded DNA oligomers of homogeneous base composition and the fluorescent probes oxazole yellow (YO) and its homodimer YOYO are described. The oligomers included 15-mers and 30-mers of polydA, polydT, polydG, and polydC. ...
Interactions between short single-stranded DNA oligomers of homogeneous base composition and the fluorescent probes oxazole yellow …
Molecular Dynamics of Oxazole Yellow Dye in its Ground and First Excited Electronic States in Solution and when Intercalated in dsDNA.
Jin C, Cerutti D, Cukier RI. Jin C, et al. J Phys Chem B. 2017 Nov 9;121(44):10242-10248. doi: 10.1021/acs.jpcb.7b08187. Epub 2017 Oct 25. J Phys Chem B. 2017. PMID: 29022340
Oxazole yellow (YOPRO), a cyanine dye consisting of benzoxazole and quinoline rings connected by a linker, is almost nonfluorescent in water, but its fluorescence is greatly enhanced after intercalation in double-stranded DNA, forming the basis of DNA concentration …
Oxazole yellow (YOPRO), a cyanine dye consisting of benzoxazole and quinoline rings connected by a linker, is almost nonfluore …
Fluorescence property of oxazole yellow-linked oligonucleotide. Triple helix formation and photocleavage of double-stranded DNA in the presence of spermine.
Inoue T, Sugiura Y, Saitoh J, Ishiguro T, Otsuka M. Inoue T, et al. Bioorg Med Chem. 1999 Jun;7(6):1207-11. doi: 10.1016/s0968-0896(99)00035-8. Bioorg Med Chem. 1999. PMID: 10428393
Oxazole yellow is an intercalator that shows enhanced fluorescence upon binding to DNA. We prepared an oxazole yellow-linked oligonucleotide that can form triple helix with interleukin 2 receptor alpha chain promoter. ...
Oxazole yellow is an intercalator that shows enhanced fluorescence upon binding to DNA. We prepared an oxazole yello …
Measuring single-virus fusion kinetics using an assay for nucleic acid exposure.
Villamil Giraldo AM, Mannsverk S, Kasson PM. Villamil Giraldo AM, et al. Biophys J. 2022 Dec 6;121(23):4467-4475. doi: 10.1016/j.bpj.2022.11.002. Epub 2022 Nov 9. Biophys J. 2022. PMID: 36330566 Free PMC article.
We have developed a real-time assay using fluorescent probes for single-virus genome exposure than can report on stages of viral entry including or subsequent to fusion pore formation and prior to viral genome trafficking. We accomplish this using oxazole yellow nuc …
We have developed a real-time assay using fluorescent probes for single-virus genome exposure than can report on stages of viral entry inclu …
ROS-induced oxidative stress is a major contributor to sperm cryoinjury.
Shi H, Li QY, Li H, Wang HY, Fan CX, Dong QY, Pan BC, Ji ZL, Li JY. Shi H, et al. Hum Reprod. 2024 Feb 1;39(2):310-325. doi: 10.1093/humrep/dead250. Hum Reprod. 2024. PMID: 38011909
Molecular behaviors of sequestosome-1 (p62 or SQSTM1) and microtubule-associated proteins 1A/1B light chain 3 (LC3) were monitored to evaluate the state of apoptosis in human sperm. Fluorescent probes oxazole yellow (YO-PRO-1) and propidium iodide (PI) were utilized …
Molecular behaviors of sequestosome-1 (p62 or SQSTM1) and microtubule-associated proteins 1A/1B light chain 3 (LC3) were monitored to evalua …
DNA melting in the presence of fluorescent intercalating oxazole yellow dyes measured with a gel-based assay.
Bjorndal MT, Fygenson DK. Bjorndal MT, et al. Biopolymers. 2002 Oct 5;65(1):40-4. doi: 10.1002/bip.10220. Biopolymers. 2002. PMID: 12209471
We measured the effect of the intercalating oxazole yellow DNA dye quinolinium,4-[(3-methyl-2(3H)-benzoxazolylidene)methyl]-1-[3-(trimethylammonio)propyl]-,diiodide (YO-PRO) and its homodimer (YOYO) on the melting of self-complementary DNA duplexes using a gel-based …
We measured the effect of the intercalating oxazole yellow DNA dye quinolinium,4-[(3-methyl-2(3H)-benzoxazolylidene)methyl]-1- …
38 results