NCBI SARS-CoV-2 Resources

Submit SARS-CoV-2 Sequences

Add assembled & raw read data to the growing public archive
SARS-CoV-2 Literature
Articles referencing SARS-CoV-2 and COVID-19 in PubMed
Free full-text content in PubMed Central (PMC), including preprints, from the Public Health Emergency COVID-19 Initiative, suitable for text mining and secondary analysis
LitCovid: Comprehensive curated literature collection regarding the 2019 novel Coronavirus
Full-text COVID-19 guidelines and reviews in Bookshelf
SARS-CoV-2 Sequence Resources
Genome Reference Sequence (NC_045512)
NCBI RefSeq SARS-CoV-2 genome annotation
NCBI RefSeq SARS-CoV-2 genome sequence record
NCBI RefSeq SARS-CoV-2 genome graphical display
NCBI Gene SARS-CoV-2 curated gene records
Explore the Data
Search a BLAST database of Betacoronavirus nucleotide sequences
Search, retrieve, and analyze sequences and other content in the NCBI Virus SARS-CoV-2 Data Hub Interactive Dashboard
Delve deeper into geotemporal and mutation data on variants and lineages via our interactive SARS-CoV-2 Variants Overview dashboard
Download viral genome and protein sequences, annotation, and a data report from NCBI Datasets
Get the latest list of SARS-CoV-2 nucleotide sequences. You can query these IDs in GenBank
SARS-CoV-2 SRA dataset on the Registry of Open Data on AWS (Amazon Web Services)
SARS-CoV-2 next-generation sequencing runs in SRA
Coronaviridae family-containing SRA runs
SARS-CoV-2 protein structures, domains, and sequences available through NCBI Structure
SARS-CoV-2 related compounds, substances, pathways, bioassays, and more in PubChem
Genome expression studies related to SARS-CoV-2 in GEO
COVID-19 Clinical Resources
Clinical studies related to COVID-19 registered in ClinicalTrials.gov
Tool for specialized clinical topic searches of COVID-19 articles in PubMed
Studies in dbGaP focused on COVID-19
COVID-19 tests registered in the Genetic Testing Registry (GTR)
Compounds used in COVID-19 related studies registered in ClinicalTrials.gov
COVID-19 related human gene annotation available through NCBI Gene