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Methods

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1.
CAPE eQTL , SNPs calculated: 12,165,858
CellulAr dePendent dEactivating mutations predictor
Web Server: https://cape.dcode.org/
2.
CAPE dsQTL , SNPs calculated: 12,165,858
CellulAr dePendent dEactivating mutations predictor
Web Server: https://cape.dcode.org/
3.
deltaSVM , SNPs calculated: 12,165,858
A method to predict the impact of regulatory variants from DNA sequence
Software and data from: http://www.beerlab.org/deltasvm/
4.
CATO , SNPs calculated: 1,655,834
CATO (Contextual Analysis of TF Occupancy) scores
Data from: http://www.uwencode.org/proj/CATO/
5.
DeepSEA , SNPs calculated: 12,591,046
DeepSEA is a deep learning-based algorithmic framework for predicting the chromatin effects of sequence alterations with single nucleotide sensitivity
6.
CADD , SNPs calculated: 12,165,886
CADD is a tool for scoring the deleteriousness of single nucleotide variants as well as insertion/deletions variants in the human genome.
7.
LINSIGHT , SNPs calculated: 12,497,865
LINSIGHT is a statistical model for estimating negative selection on noncoding sequences in the human genome.
8.
P-Causal , SNPs calculated: 12,590,854
Probability of the SNP to be causal