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Web Services

The web services are available to retrieve the data in JSON or HTML formats from a client based in a RESTful service

RESTful URLs

Retrieve all SNP data

  1. Search SNP by ID, HTML format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snp/?name=rs7417106
  2. Search SNP by ID, JSON format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snp/?name=rs7417106&format=json

Retrieve calculated data

  1. Search SNP by ID, HTML format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?name=rs7417106
  2. Search SNP by ID, JSON format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?name=rs7417106&format=json
  3. Search SNP by Gene name, HTML format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?gene_name=DDX11L1
  4. Search SNP by Gene name, JSON format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?gene_name=DDX11L1&format=json
  5. Search SNPs by chromosome, HTML format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?chr=chr1
  6. Search SNPs by chromosome, JSON format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?chr=chr1&format=json
  7. Search SNPs by chromosome and region, HTML format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?chr=chr1&start=0&end=3369847
  8. Search SNPs by chromosome and region, JSON format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?chr=chr1&start=0&end=3369847&format=json
  9. Search SNPs by method: CAPE eQTL (use method's number as shown in Methods), HTML format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?method=1
  10. Search SNPs by method: CAPE eQTL (use method's number as shown in Methods), JSON format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?method=1&format=json
  11. Search SNPs by tissue: GM12878 Lymphoblastoid Cells (use tissue's number as shown in Tissues), HTML format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?tissue=33
  12. Search SNPs by tissue: GM12878 Lymphoblastoid Cells (use tissue's number as shown in Tissues), JSON format: https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?tissue=33&format=json

Results in JSON format

The results in JSON format for the calculated data follows the next syntax:

{
    "count": 4059,
    "next": "https://www.ncbi.nlm.nih.gov/api/snpdata/?page=2",
    "previous": null,
    "results": [
        {
            "name": "rs7417106",
            "pos": 911595,
            "ref": "A",
            "alt": "G",
            "chr": "chr1",
            "method": "CAPE eQTL",
            "tissue": "GM12878 Lymphoblastoid Cells",
            "value": 0.00483957
    ]
}

Global Fields

SNP Fields

Combining options

All options can be used together to retrieve the specific data. For example, to retrieve the list of SNPs in the region: chr5:5689-758812640 calculated with the method CAPE eQTL

https://www.ncbi.nlm.nih.gov/research/snpdelscore/api/snpdata/?chr=chr5&start=5689&end=758812640&&method=1