U - COG2123 - Exosome complex RNA-binding protein Rrp42, RNase PH superfamily
COG symbol:
Rrp42
PDB entry:
4IFD
PubMed:
23319881
Basic Stats
Organisms: 119/2296
Genes: 121/6266336
Proteins: 121/5872258
Median Protein Length: 268.18
Taxonomy Categories
Click on table rows for more informationARCHAEA
ASGARDARCHAEOTA [8/8 organisms 10 genes]
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| Assembly | Genome | TaxID | No. genes |
|---|---|---|---|
| GCA_020348965.1 | Candidatus_Heimdallarchaeota_archaeon_bin272 | 2026747 | 1 |
| GCA_021513715.1 | Candidatus_Heimdallarchaeum_endolithica | 2876572 | 1 |
| GCA_025839675.1 | Candidatus_Lokiarchaeum_ossiferum | 2951803 | 1 |
| GCA_001940665.2 | Candidatus_Odinarchaeum_yellowstonii | 1841599 | 1 |
| GCA_020355105.1 | Candidatus_Thorarchaeota_archaeon_bin8 | 2053491 | 2 |
| GCA_020348985.1 | Candidatus_Thorarchaeota_archaeon_bin27 | 2053491 | 2 |
| GCA_020343655.1 | Promethearchaeota_archaeon_bin132 | 2053489 | 1 |
| GCF_008000775.1 | Promethearchaeum syntrophicum | 2594042 | 1 |
CRENARCHAEOTA [29/29 organisms 29 genes]
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| Assembly | Genome | TaxID | No. genes |
|---|---|---|---|
| GCF_000213215.1 | Acidianus_hospitalis_W1 | 933801 | 1 |
| GCF_000144915.1 | Acidilobus_saccharovorans_345-15 | 666510 | 1 |
| GCF_000011125.1 | Aeropyrum_pernix_K1 | 272557 | 1 |
| GCF_000317795.1 | Caldisphaera_lagunensis_DSM_15908 | 1056495 | 1 |
| GCF_000018305.1 | Caldivirga_maquilingensis_IC-167 | 397948 | 1 |
| GCA_029637525.1 | Desulfurococcaceae_archaeon_MEX13E-LK6-19 | 2822207 | 1 |
| GCF_000020905.1 | Desulfurococcus_amylolyticus_1221n | 490899 | 1 |
| GCF_000258425.1 | Fervidicoccus_fontis_Kam940 | 1163730 | 1 |
| GCF_000015145.1 | Hyperthermus_butylicus_DSM_5456 | 415426 | 1 |
| GCF_000017945.1 | Ignicoccus_hospitalis_KIN4I | 453591 | 1 |
| GCA_000145985.1 | Ignisphaera_aggregans_DSM_17230 | 583356 | 1 |
| GCF_000993805.1 | Infirmifilum_uzonense_1807-2 | 1550241 | 1 |
| GCA_000016605.1 | Metallosphaera_sedula_DSM_5348 | 399549 | 1 |
| GCF_000007225.1 | Pyrobaculum_aerophilum_IM2 | 178306 | 1 |
| GCF_001412615.1 | Pyrodictium_delaneyi_Su06 | 1273541 | 1 |
| GCF_033097485.1 | Pyrofollis_japonicus_YC29 | 3060460 | 1 |
| GCF_000223395.1 | Pyrolobus_fumarii_1A | 694429 | 1 |
| GCF_000007005.1 | Saccharolobus_solfataricus_P2 | 273057 | 1 |
| GCF_000092465.1 | Staphylothermus_hellenicus_DSM_12710 | 591019 | 1 |
| GCF_009729035.1 | Stygiolobus_azoricus_FC6 | 41675 | 1 |
| GCF_003967175.1 | Sulfodiicoccus_acidiphilus_HS-1 | 1670455 | 1 |
| GCF_000012285.1 | Sulfolobus_acidocaldarius_DSM_639 | 330779 | 1 |
| GCF_008326385.1 | Sulfuracidifex_tepidarius_IC-007 | 1294262 | 1 |
| GCF_000011205.1 | Sulfurisphaera_tokodaii_7 | 273063 | 1 |
| GCF_000446015.1 | Thermofilum_adornatum_1910b | 1365176 | 1 |
| GCF_000264495.1 | Thermogladius_calderae_1633 | 1184251 | 1 |
| GCF_000253055.1 | Thermoproteus_tenax_Kra_1 | 768679 | 1 |
| GCF_000092185.1 | Thermosphaera_aggregans_DSM_11486 | 633148 | 1 |
| GCF_000148385.1 | Vulcanisaeta_distributa_DSM_14429 | 572478 | 1 |
EURYARCHAEOTA [29/103 organisms 30 genes]
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| Assembly | Genome | TaxID | No. genes |
|---|---|---|---|
| GCF_000008665.1 | Archaeoglobus_fulgidus_DSM_4304 | 224325 | 1 |
| GCF_020885915.1 | Candidatus_Methanoliparum_sp._LAM-1 | 2874846 | 1 |
| GCA_905171695.1 | Candidatus_Methanoperedenaceae_archaeon_GB37 | 2691037 | 2 |
| GCA_025962715.1 | Candidatus_Methanospirare_jalkutatii | 2977098 | 1 |
| GCF_000025505.1 | Ferroglobus_placidus_DSM_10642 | 589924 | 1 |
| GCA_000789255.1 | Geoglobus_acetivorans_SBH6 | 565033 | 1 |
| GCF_020618475.1 | Haladaptatus_halobius_PSR5 | 2884875 | 0 |
| GCF_002952775.1 | Halalkaliarchaeum_desulfuricum_AArc-Sl | 2055893 | 0 |
| GCF_000196895.1 | Halalkalicoccus_jeotgali_B3 | 795797 | 0 |
| GCF_001011115.1 | Halanaeroarchaeum_sulfurireducens_HSR2 | 1604004 | 0 |
| GCF_004799665.1 | Halapricum_salinum_CBA1105 | 1457250 | 0 |
| GCF_003721175.2 | Halarchaeum_sp._CBA1220 | 1853682 | 0 |
| GCF_000011085.1 | Haloarcula_marismortui_ATCC_43049 | 272569 | 0 |
| GCF_000006805.1 | Halobacterium_salinarum_NRC-1_ATCC_700922 | 64091 | 0 |
| GCF_019823105.1 | Halobaculum_magnesiiphilum_NBRC_109044 | 1017351 | 0 |
| GCF_024498335.1 | Halobellus_ramosii_DSM_26177 | 1379040 | 0 |
| GCF_000226975.2 | Halobiforma_lacisalsi_AJ5 | 358396 | 0 |
| GCF_023115355.1 | Halocatena_salina_AD-1 | 2934340 | 0 |
| GCF_003058365.1 | Halococcoides_cellulosivorans_HArcel1T | 1679096 | 0 |
| GCF_022870485.1 | Halococcus_dombrowskii_H4 | 179637 | 0 |
| GCF_001767315.1 | Halodesulfurarchaeum_formicicum_HTSR1 | 1873524 | 0 |
| GCF_000025685.1 | Haloferax_volcanii_DS2 | 309800 | 0 |
| GCF_000172995.2 | Halogeometricum_borinquense_DSM_11551 | 469382 | 0 |
| GCF_024298885.1 | Haloglomus_halophilum_ZY41 | 2962672 | 0 |
| GCF_002788215.1 | Halohasta_litchfieldiae_tADL | 1073996 | 0 |
| GCF_002025255.2 | Halolamina_sp._CBA1230 | 1853690 | 0 |
| GCF_024227715.1 | Halomarina_sp._BCD28 | 2961595 | 0 |
| GCF_024218775.1 | Halomicroarcula_marina_DT1 | 2961574 | 0 |
| GCF_000023965.1 | Halomicrobium_mukohataei_DSM_12286 | 485914 | 0 |
| GCF_002355635.1 | Halopenitus_persicus_CBA1233 | 1048396 | 0 |
| GCF_000217715.1 | Halopiger_xanaduensis_SH-6 | 797210 | 0 |
| GCF_003856835.1 | Haloplanus_aerogenes_JCM_16430 | 660522 | 0 |
| GCF_020097835.1 | Haloprofundus_halobius_SEDH52 | 2876194 | 0 |
| GCF_000237865.1 | Haloquadratum_walsbyi_C23_DSM_16854_C23 | 768065 | 0 |
| GCF_024362405.1 | Halorarius_litoreus_BND22 | 2962676 | 0 |
| GCF_000470655.1 | Halorhabdus_tiamatea_SARL4B | 1033806 | 0 |
| GCF_001989615.1 | Halorientalis_IM1011 | 1932360 | 0 |
| GCF_000022205.1 | Halorubrum_lacusprofundi_ATCC_49239 | 416348 | 0 |
| GCF_004087835.1 | Halorussus_pelagicus_RC-68 | 2505977 | 0 |
| GCF_029338355.1 | Halosegnis_sp._DT85 | 3034023 | 0 |
| GCF_013415885.1 | Halosimplex_rubrum_R27 | 869889 | 0 |
| GCF_023028105.1 | Halosolutus_gelatinilyticus_SQT-29-1 | 2931975 | 0 |
| GCF_000517625.1 | Halostagnicola_larsenii_XH-48 | 797299 | 0 |
| GCF_000025325.1 | Haloterrigena_turkmenica_DSM_5511 | 543526 | 0 |
| GCF_026410925.1 | Halovenus_salina_JCM_30072 | 1510225 | 0 |
| GCF_000328525.1 | Halovivax_ruber_XH-70 | 797302 | 0 |
| GCF_032594435.1 | Methanimicrococcus_sp._Es2 | 3028294 | 1 |
| GCF_000191585.1 | Methanobacterium_lacus_AL-21 | 877455 | 1 |
| GCF_000024185.1 | Methanobrevibacter_ruminantium_M1 | 634498 | 1 |
| GCF_000091665.1 | Methanocaldococcus_jannaschii_DSM_2661 | 243232 | 0 |
| GCF_000063445.1 | Methanocella_arvoryzae_MRE50 | 351160 | 1 |
| GCF_000013725.1 | Methanococcoides_burtonii_DSM_6242 | 259564 | 1 |
| GCF_000011585.1 | Methanococcus_maripaludis_S2 | 267377 | 0 |
| GCF_000015765.1 | Methanocorpusculum_labreanum_Z | 410358 | 0 |
| GCF_900036045.1 | Methanoculleus_bourgensis | 83986 | 0 |
| GCF_003351865.1 | Methanofervidicoccus_A16 | 2607662 | 0 |
| GCF_017357525.1 | Methanofollis_aquaemaris_N2F9704 | 126734 | 0 |
| GCF_026684035.1 | Methanogenium_organophilum_DSM_3596 | 2199 | 0 |
| GCF_000196655.1 | Methanohalobium_evestigatum_Z-7303 | 644295 | 1 |
| GCF_000025865.1 | Methanohalophilus_mahii_DSM_5219 | 547558 | 1 |
| GCF_000147875.1 | Methanolacinia_petrolearia_DSM_11571 | 679926 | 0 |
| GCA_016699325.1 | Methanolinea_sp. | 2268143 | 0 |
| GCF_013388255.1 | Methanolobus_zinderi_DSM_21339 | 536044 | 1 |
| GCF_000328665.1 | Methanomethylovorans_hollandica_DSM_15978 | 867904 | 1 |
| GCF_029633915.1 | Methanomicrobium_antiquum_DSM_21220 | 487686 | 0 |
| GCF_029854155.1 | Methanonatronarchaeum_sp._AMET-Sl | 3037654 | 1 |
| GCF_024662215.1 | Methanoplanus_endosymbiosus_DSM_3599 | 33865 | 0 |
| GCF_000007185.1 | Methanopyrus_kandleri_AV19 | 190192 | 1 |
| GCF_000327485.1 | Methanoregula_formicica_SMSP | 593750 | 0 |
| GCF_000217995.1 | Methanosalsum_zhilinae_DSM_4017 | 679901 | 1 |
| GCF_000007345.1 | Methanosarcina_acetivorans_C2A | 188937 | 1 |
| GCF_000007065.1 | Methanosarcina_mazei_Go1 | 192952 | 1 |
| GCF_000012545.1 | Methanosphaera_stadtmanae_DSM_3091 | 339860 | 1 |
| GCF_000021965.1 | Methanosphaerula_palustris_E1-9c | 521011 | 0 |
| GCF_000013445.1 | Methanospirillum_hungatei_JF-1 | 323259 | 0 |
| GCF_000008645.1 | Methanothermobacter_thermautotrophicus_Delta_H | 187420 | 1 |
| GCF_000179575.2 | Methanothermococcus_okinawensis_IH1 | 647113 | 0 |
| GCF_000166095.1 | Methanothermus_fervidus_DSM_2088 | 523846 | 1 |
| GCF_000204415.1 | Methanothrix_soehngenii_GP6 | 990316 | 1 |
| GCF_000214415.1 | Methanotorris_igneus_Kol_5 | 880724 | 0 |
| GCA_001761425.1 | Nanohaloarchaea_archaeon_SG9 | 1737403 | 1 |
| GCF_017094485.1 | Natranaeroarchaeum_sulfidigenes_AArc-S | 2784880 | 0 |
| GCF_002156705.1 | Natrarchaeobaculum_aegyptiacum_JWNM-HA_15 | 745377 | 0 |
| GCF_000025625.1 | Natrialba_magadii_ATCC_43099 | 547559 | 0 |
| GCF_023008545.1 | Natribaculum_luteum_IBRC-M_10912 | 1586232 | 0 |
| GCF_000281695.1 | Natrinema_J7-2 | 406552 | 0 |
| GCF_000230715.2 | Natronobacterium_gregoryi_SP2 | 797304 | 0 |
| GCF_024362485.1 | Natronobeatus_ordinarius_WLHSJ27 | 2963433 | 0 |
| GCF_000328685.1 | Natronococcus_occultus_SP4 | 694430 | 0 |
| GCF_000026045.1 | Natronomonas_pharaonis_DSM_2160 | 348780 | 0 |
| GCF_024362525.1 | Natrononativus_amylolyticus_CGA73 | 2963434 | 0 |
| GCF_004799645.1 | Natronorubrum_bangense_JCM_10635 | 61858 | 0 |
| GCF_023973145.1 | Natronosalvus_vescus_CGA3 | 2953881 | 0 |
| GCF_000725425.1 | Palaeococcus_pacificus_DY20341 | 1343739 | 1 |
| GCF_000195935.2 | Pyrococcus_abyssi_GE5_Orsay | 272844 | 1 |
| GCF_000007305.1 | Pyrococcus_furiosus_DSM_3638 | 186497 | 1 |
| GCF_020614395.1 | Salarchaeum_japonicum_JCM_16327 | 555573 | 0 |
| GCF_000403645.1 | Salinarchaeum_Harcht-Bsk1 | 1333523 | 0 |
| GCF_030505615.1 | Salinibaculum_sp._KK48 | 3058903 | 0 |
| GCF_002906575.1 | Salinigranum_rubrum_GX10 | 755307 | 0 |
| GCF_024296665.1 | Salinilacihabitans_rarus_AD-4 | 2961596 | 0 |
| GCF_025231485.1 | Salinirubellus_salinus_ZS-35-S2 | 1364945 | 0 |
| GCF_000009965.1 | Thermococcus_kodakarensis_KOD1 | 69014 | 1 |
NITROSOSPHAEROTA [13/13 organisms 13 genes]
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| Assembly | Genome | TaxID | No. genes |
|---|---|---|---|
| GCA_000200715.1 | Cenarchaeum_symbiosum_A | 414004 | 1 |
| GCF_013340765.1 | Conexivisphaera_calida_NAS-02 | 1874277 | 1 |
| GCF_000018465.1 | Nitrosopumilus_maritimus_SCM1 | 436308 | 1 |
| GCF_000698785.1 | Nitrososphaera_viennensis_EN76 | 926571 | 1 |
| GCA_000270325.1 | Candidatus_Caldarchaeum_subterraneum | 311458 | 1 |
| GCA_000204585.1 | Candidatus_Nitrosarchaeum_limnium_SFB1 | 886738 | 1 |
| GCF_002906215.1 | Candidatus_Nitrosocaldus_islandicus | 2045011 | 1 |
| GCF_000802205.1 | Candidatus_Nitrosocosmicus_oleophilus_MY3 | 1353260 | 1 |
| GCF_002156965.1 | Candidatus_Nitrosomarinus_catalina_SPOT01 | 1898749 | 1 |
| GCF_000812185.1 | Candidatus_Nitrosopelagicus_brevis_CN25 | 1410606 | 1 |
| GCF_000299365.1 | Candidatus_Nitrosopumilus_koreensis_AR1 | 1229908 | 1 |
| GCF_000303155.1 | Candidatus_Nitrososphaera_gargensis_Ga9.2 | 1237085 | 1 |
| GCF_000955905.1 | Candidatus_Nitrosotenuis_cloacae_SAT1 | 1603555 | 1 |
THERMOPLASMATOTA [17/17 organisms 18 genes]
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| Assembly | Genome | TaxID | No. genes |
|---|---|---|---|
| GCF_031201125.1 | Acidiplasma_sp. | 1872114 | 1 |
| GCF_000025665.1 | Aciduliprofundum_boonei_T469 | 439481 | 1 |
| GCA_019262145.1 | Candidatus_Methanogranum_sp._U3.2.1 | 2848114 | 1 |
| GCF_000404225.1 | Candidatus_Methanomassiliicoccus_intestinalis_Issoire-Mx1 | 1295009 | 1 |
| GCF_003711245.1 | Candidatus_Methanomethylophilus_alvus_Mx-05 | 1291540 | 1 |
| GCF_000800805.1 | Candidatus_Methanoplasma_termitum_MpT1 | 1577791 | 2 |
| GCF_900090055.1 | Cuniculiplasma_divulgatum_PM4_JCM_30641 | 1673428 | 1 |
| GCF_000152265.2 | Ferroplasma_acidarmanus_Fer1 | 333146 | 1 |
| GCA_009911715.1 | Methanomassiliicoccaceae_archaeon_DOK | 1535962 | 1 |
| GCA_030168595.1 | Methanomassiliicoccales_archaeon_LGM-DZ1 | 3018978 | 1 |
| GCF_000008265.1 | Picrophilus_oshimae_DSM_9789_DSM_9790 | 1122961 | 1 |
| GCF_000195915.1 | Thermoplasma_acidophilum_DSM_1728 | 273075 | 1 |
| GCF_000011185.1 | Thermoplasma_volcanium_GSS1 | 273116 | 1 |
| GCA_000350305.1 | Thermoplasmatales_archaeon_BRNA1 | 1054217 | 1 |
| GCA_016806715.1 | Thermoplasmatales_archaeon_B_DKE | 2268204 | 1 |
| GCA_001560915.1 | methanogenic_archaeon_ISO4-H5 | 1495144 | 1 |
| GCA_000246735.1 | uncultured_Candidatus_Poseidoniales_archaeon | 274854 | 1 |
OTHER_ARCHAEA [23/23 organisms 29 genes]
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| Assembly | Genome | TaxID | No. genes |
|---|---|---|---|
| GCA_000008085.1 | Nanoarchaeum_equitans_Kin4-M | 228908 | 1 |
| GCF_023169545.1 | Nanobdella_aerobiophila | 2586965 | 1 |
| GCA_016432325.1 | Candidatus_Aenigmarchaeota_archaeon | 2093792 | 1 |
| GCA_020341775.1 | Candidatus_Bathyarchaeota_archaeon | 2026714 | 2 |
| GCA_020344435.1 | Candidatus_Bathyarchaeota_archaeon | 2026714 | 2 |
| GCA_020344315.1 | Candidatus_Bathyarchaeum | 3072974 | 1 |
| GCA_016699555.1 | Candidatus_Diapherotrites_archaeon | 2026736 | 1 |
| GCA_013426015.1 | Candidatus_Fermentimicrarchaeum_limneticum | 2795018 | 1 |
| GCF_000019605.1 | Candidatus_Korarchaeum_cryptofilum_OPF8 | 374847 | 1 |
| GCF_002214165.1 | Candidatus_Mancarchaeum_acidiphilum_Mia14 | 1920749 | 1 |
| GCA_021654395.1 | Candidatus_Micrarchaeota_archaeon | 2250274 | 1 |
| GCF_016806735.1 | Candidatus_Micrarchaeum_A_DKE | 2282148 | 1 |
| GCA_029207735.1 | Candidatus_Nanohaloarchaeota_archaeon_SVXNc | 2978047 | 1 |
| GCA_029232205.1 | Candidatus_Nanohalobia_archaeon_BNXNv | 2978046 | 1 |
| GCF_009617975.1 | Candidatus_Nanohalobium_constans | 2565781 | 1 |
| GCA_026016245.1 | Candidatus_Pacearchaeota_archaeon | 2026773 | 1 |
| GCA_016432305.1 | Candidatus_Woesearchaeota_archaeon | 2026803 | 2 |
| GCA_020343615.1 | Candidatus_Woesearchaeota_archaeon | 2026803 | 2 |
| GCA_000830275.1 | archaeon_GW2011_AR10 | 1579370 | 1 |
| GCA_000830295.1 | archaeon_GW2011_AR15 | 1579373 | 1 |
| GCA_000830315.1 | archaeon_GW2011_AR20 | 1579378 | 1 |
| GCA_020343435.1 | archaeon_bin1429 | 1906665 | 2 |
| GCA_020355185.1 | archaeon_bin779 | 1906665 | 2 |