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Eukaryotic RefSeq Genome Annotation Status

NCBI uses an automated pipeline to provide annotation on some RefSeq genome records. This page provides information about:

Another page shows all genomes annotated by the NCBI Eukaryotic Genome Annotation Pipeline, with links to available resources for each. If you do not see your genome of interest in these tables, please read the annotation policy and then make an annotation request.

Annotation runs in progress

An annotation run is marked in progress until the data produced is available in the sequence databases, in Gene and on the FTP site.

Species RefSeq assembly(ies) Annotation Release Freeze Date Status
Miscanthus floridulus (monocots) ASM1932011v1 (GCF_019320115.1) GCF_019320115.1-RS_2024_07 2024-07-10 In sequence databases

On the FTP
Molothrus aeneus (bronzed cowbird) BPBGC_Maene_1.0 (GCF_037042795.1) GCF_037042795.1-RS_2024_07 2024-07-12 In sequence databases

On the FTP

Recently completed annotation runs

Genomes annotated in the past 6 weeks.

Species RefSeq assembly(ies) Annotation Release Freeze Date Release Date Links
Symphalangus syndactylus (siamang) NHGRI_mSymSyn1-v2.1_pri (GCF_028878055.3) GCF_028878055.3-RS_2024_07 2024-07-16 2024-07-17 FTP AR
Branchiostoma lanceolatum (amphioxus) klBraLanc5.hap2 (GCF_035083965.1) GCF_035083965.1-RS_2024_07 2024-07-12 2024-07-16 FTP B AR
Euwallacea similis (beetles) ESF131.1 (GCF_039881205.1) GCF_039881205.1-RS_2024_07 2024-07-12 2024-07-15 FTP AR GDV
Venturia canescens (wasps, ants & bees) ASM1945775v1 (GCF_019457755.1) GCF_019457755.1-RS_2024_07 2024-07-11 2024-07-12 FTP B AR GDV
Chelonus insularis (wasps, ants & bees) ASM1335770v1 (GCF_013357705.1) GCF_013357705.1-RS_2024_07 2024-07-10 2024-07-12 FTP B AR GDV
Oryza sativa Japonica Group (Japanese rice) ASM3414082v1 (GCF_034140825.1) GCF_034140825.1-RS_2024_06 2024-06-21 2024-07-10 FTP B AR GDV
Saccopteryx leptura (lesser sac-winged bat) mSacLep1_pri_phased_curated (GCF_036850995.1) GCF_036850995.1-RS_2024_07 2024-07-09 2024-07-10 FTP B AR GDV
Saccopteryx bilineata (greater sac-winged bat) mSacBil1_pri_phased_curated (GCF_036850765.1) GCF_036850765.1-RS_2024_07 2024-07-03 2024-07-09 FTP B AR GDV
Sylvia atricapilla (blackcap) bSylAtr1.pri (GCF_009819655.1) GCF_009819655.1-RS_2024_07 2024-07-03 2024-07-09 FTP B AR GDV
Euwallacea fornicatus (beetles) ASM4011564v1 (GCF_040115645.1) GCF_040115645.1-RS_2024_07 2024-07-03 2024-07-05 FTP B AR GDV
Chamaea fasciata (birds) bChaFas1.0.hap1 (GCF_029207755.1) GCF_029207755.1-RS_2024_06 2024-06-28 2024-07-01 FTP B AR GDV
Pocillopora verrucosa (stony corals) ASM3666991v2 (GCF_036669915.1) GCF_036669915.1-RS_2024_06 2024-06-25 2024-06-28 FTP B AR GDV
Magallana gigas (Pacific oyster) xbMagGiga1.1 (GCF_963853765.1) GCF_963853765.1-RS_2024_06 2024-06-20 2024-06-28 FTP B AR GDV
Dysidea avara (sponges) odDysAvar1.4 (GCF_963678975.1) GCF_963678975.1-RS_2024_06 2024-06-24 2024-06-26 FTP B AR GDV
Euphorbia lathyris (eudicots) ddEupLath1.1 (GCF_963576675.1) GCF_963576675.1-RS_2024_06 2024-06-06 2024-06-24 FTP B AR GDV
Labrus bergylta (ballan wrasse) fLabBer1.1 (GCF_963930695.1) GCF_963930695.1-RS_2024_06 2024-06-21 2024-06-24 FTP B AR GDV
Oscarella lobularis (sponges) ooOscLobu1.1 (GCF_947507565.1) GCF_947507565.1-RS_2024_06 2024-06-21 2024-06-24 FTP B AR GDV
Muntiacus reevesi (Reeves' muntjac) mMunRee1.1 (GCF_963930625.1) GCF_963930625.1-RS_2024_06 2024-06-21 2024-06-22 FTP B AR GDV
Phocoena phocoena (harbor porpoise) mPhoPho1.1 (GCF_963924675.1) GCF_963924675.1-RS_2024_06 2024-06-21 2024-06-22 FTP B AR GDV
Drosophila suzukii (flies) Dsuz_RU_1.0 (GCF_037355615.1) GCF_037355615.1-RS_2024_06 2024-06-14 2024-06-19 FTP B AR GDV
Hydra vulgaris (swiftwater hydra) HydraT2T_AEP (GCF_038396675.1) GCF_038396675.1-RS_2024_06 2024-06-11 2024-06-19 FTP B AR GDV
Hydra vulgaris (swiftwater hydra) HydraT2T_105 (GCF_037890685.1) GCF_037890685.1-RS_2024_06 2024-06-11 2024-06-19 FTP B AR GDV
Patagioenas fasciata (band-tailed pigeon) bPatFas1.hap2 (GCF_036971685.1) GCF_036971685.1-RS_2024_06 2024-06-14 2024-06-18 FTP B AR GDV
Quercus suber (cork oak) Cork oak 2.0 (GCF_002906115.3) GCF_002906115.3-RS_2024_06 2024-06-06 2024-06-14 FTP B AR GDV
Artemia franciscana (crustaceans) ASM3288406v1 (GCF_032884065.1) GCF_032884065.1-RS_2024_06 2024-06-06 2024-06-13 FTP B AR GDV
Cyrtonyx montezumae (Montezuma quail) pur_monq_1.0 (GCF_038088225.1) GCF_038088225.1-RS_2024_06 2024-06-10 2024-06-13 FTP B AR GDV

Tables showing all genomes annotated by the NCBI Eukaryotic Genome Annotation Pipeline, with links to available resources for each, are avaliable here.

Last updated: 2024-04-04T20:39:01Z